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Closed and high quality bacterial genomes of the Oligo Mouse Microbiota community

Abstract : The Oligo-Mouse-Microbiota (OMM 12) gnotobiotic murine model is an increasingly popular model for microbiota studies. However, following Illumina and PacBio sequencing, the genomes of the 12 strains could not be closed. Here, we used genomic chromosome conformation capture (Hi-C) data to reorganize, close and improve the quality of these 12 genomes.
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https://hal-pasteur.archives-ouvertes.fr/pasteur-03204821
Contributor : Ana Cova Rodrigues <>
Submitted on : Wednesday, April 21, 2021 - 7:15:51 PM
Last modification on : Wednesday, May 5, 2021 - 3:38:46 AM
Long-term archiving on: : Thursday, July 22, 2021 - 7:32:17 PM

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Quentin Lamy-Besnier, Romain Koszul, Laurent Debarbieux, Martial Marbouty. Closed and high quality bacterial genomes of the Oligo Mouse Microbiota community. Microbiology Resource Announcements, American Society for Microbiology, 2021, 10 (17), pp.e01396-20. ⟨10.1128/MRA.01396-20⟩. ⟨pasteur-03204821⟩

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