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Journal articles
Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis
Vartul Sangal
1
Kathryn E. Holt
2
Jianfeng Yuan
1
Derek J Brown
Ingrid Filliol-Toutain
3
François-Xavier Weill
3
Dong-Wook Kim
4
Wanderley Dias da Silveira
5
Derek Pickard
6
Julian Parkhill
6
Jun Yu
1, *
*
Corresponding author
Ingrid Filliol-Toutain 3
Author
François-Xavier Weill 3
Author IdHAL : francois-xavier-weill
Dong-Wook Kim 4
Author
Wanderley Dias da Silveira 5
Author
1
University of Strathclyde (16 Richmond Street, Glasgow G1 1XQ, Scotland, UK - United Kingdom)
2
University of Melbourne (Parkville VIC 3010 - Australia)
3
CNR-ESS - Centre National de Référence des Escherichia coli, Shigella et Salmonella - Bactéries pathogènes entériques (28, rue du Docteur Roux - 75724 Paris Cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
4
Hanyang University (South Korea)
5
UNICAMP - University of Campinas [Campinas] (Campus Universitário Zeferino Vaz, Barão Geraldo, Campinas - SP, 13083-970 - Brazil)
6
The Wellcome Trust Sanger Institute [Cambridge] (Hinxton, Cambridge CB10 1SA, UK - United Kingdom)
Abstract : The current Shigella sonnei pandemic involves geographically associated, multidrug-resistant clones. This study has demonstrated that S. sonnei phylogeny can be accurately defined with limited single nucleotide polymorphisms (SNPs). By typing 6 informative SNPs using a high-resolution melting (HRM) assay, major S. sonnei lineages/sublineages can be identified as defined by whole-genome variation.
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Journal articles
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https://hal-pasteur.archives-ouvertes.fr/pasteur-01115898
Contributor : Marie Lemesle <>
Submitted on : Thursday, February 12, 2015 - 10:10:14 AM
Last modification on : Thursday, June 18, 2020 - 4:48:05 PM
Long-term archiving on: : Sunday, April 16, 2017 - 8:19:27 AM
Contributor : Marie Lemesle <>
Submitted on : Thursday, February 12, 2015 - 10:10:14 AM
Last modification on : Thursday, June 18, 2020 - 4:48:05 PM
Long-term archiving on: : Sunday, April 16, 2017 - 8:19:27 AM
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- HAL Id : pasteur-01115898, version 1
- DOI : 10.1128/JCM.02238-12
- PUBMED : 23115259
- PUBMEDCENTRAL : PMC3536230
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Vartul Sangal, Kathryn E. Holt, Jianfeng Yuan, Derek J Brown, Ingrid Filliol-Toutain, et al.. Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis. Journal of Clinical Microbiology, American Society for Microbiology, 2013, 51 (1), pp.303-305. ⟨10.1128/JCM.02238-12⟩. ⟨pasteur-01115898⟩
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