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Journal articles
Perspective on taxonomic classification of uncultivated viruses
Bas Dutilh
1, 2, *
Arvind Varsani
3, 4
Yigang Tong
5
Peter Simmonds
6
Sead Sabanadzovic
7
Luisa Rubino
8
Simon Roux
9
Alejandro Muñoz
10
Cédric Lood
11
Elliot Lefkowitz
12
Jens Kuhn
13
Mart Krupovic
14
Robert Edwards
15
J Rodney Brister
16
Evelien Adriaenssens
17
Matthew Sullivan
18
*
Corresponding author
Bas E Dutilh 1, 2
Correspondent author ORCID : https://orcid.org/0000-0003-2329-7890
Arvind Varsani 3, 4
Author ORCID : https://orcid.org/0000-0003-4111-2415
Yigang Tong 5
Author
Peter Simmonds 6
Author
Sead Sabanadzovic 7
Author ORCID : https://orcid.org/0000-0002-2995-2633
Luisa Rubino 8
Author ORCID : https://orcid.org/0000-0002-2073-2415
Simon Roux 9
Author ORCID : https://orcid.org/0000-0002-5831-5895
Alejandro Reyes Muñoz 10
Author
Cédric Lood 11
Author ORCID : https://orcid.org/0000-0001-7826-3378
Elliot J Lefkowitz 12
Author ORCID : https://orcid.org/0000-0002-4748-4925
Jens H Kuhn 13
Author ORCID : https://orcid.org/0000-0002-7800-6045
Mart Krupovic 14
Author IdHAL : mart-krupovic ResearcherId : http://www.researcherid.com/rid/I-4209-2012 ORCID : https://orcid.org/0000-0001-5486-0098
Robert A Edwards 15
Author ORCID : https://orcid.org/0000-0001-8383-8949
J Rodney Brister 16
Author ORCID : https://orcid.org/0000-0002-2249-975X
Evelien M Adriaenssens 17
Author ORCID : https://orcid.org/0000-0003-4826-5406
Matthew B Sullivan 18
Author
1
Utrecht University [Utrecht] (Heidelberglaan 8, 3584 CS Utrecht - Netherlands)
2
Friedrich-Schiller-Universität = Friedrich Schiller University Jena [Jena, Germany] (Universitätshauptgebäude,
Fürstengraben 1,
07743 Jena - Germany)
3
ASU - Arizona State University [Tempe] (325 E Apache Blvd, Tempe, AZ 85281, États-Unis - United States)
4
University of Cape Town (Private Bag X3, Rondebosch 7701, South Africa - South Africa)
6
University of Oxford [Oxford] (Wellington Square, Oxford OX1 2JD - United Kingdom)
7
Mississippi State University [Mississippi] ( 75 B.S. Hood Dr., Mississippi State, MS 39762 - United States)
8
IPSP - Istituto per la Protezione Sostenibile delle Piante [Torino, Italia] ( Str. delle Cacce, 73, 10135 Torino TO, Italie - Italy)
- CNR - Consiglio Nazionale delle Ricerche (Piazzale Aldo Moro, 7, 00185 Roma RM - Italy)
9
LBNL - Lawrence Berkeley National Laboratory [Berkeley] (1 Cyclotron Rd. MS 50A-1148, Berkeley, CA 94720 - United States)
10
UNIANDES - Universidad de los Andes [Bogota] (Bogotá - Colombia - Colombia)
11
KU Leuven - Catholic University of Leuven - Katholieke Universiteit Leuven (Oude Markt 13 - bus 5005, 3000 Leuven - Belgium)
12
UAB - University of Alabama at Birmingham [ Birmingham] (1720 2nd Ave S, Birmingham, AL 35233 - United States)
13
NIAID-NIH - National Institute of Allergy and Infectious Diseases [Bethesda] (5601 Fishers Lane, Suite 6D, MSC 9804 - Bethesda, MD 20892-9804 - United States)
- NIH - National Institutes of Health [Bethesda] (9000 Rockville Pike, Bethesda, Maryland 20892 - United States)
14
Virologie des archées - Archaeal Virology (Département Microbiologie
25-28 rue du Docteur Roux
75724 Paris cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
15
Flinders University [Adelaide, Australia] (GPO Box 2100, Adelaide 5001, South Australia - Australia)
16
NLM - National Library of Medicine (8600 Rockville Pike, Bethesda, MD 20894 - United States)
- NIH - National Institutes of Health [Bethesda] (9000 Rockville Pike, Bethesda, Maryland 20892 - United States)
- NCBI - National Center for Biotechnology Information (Bethesda, MD 20894, USA - United States)
17
QIB - Quadram Institute Bioscience (United Kingdom)
18
OSU - Ohio State University [Columbus] (Ohio State University Enarson Hall 154 W 12th Avenue Columbus, Ohio 43210 - United States)
Abstract : Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries.
Document type :
Journal articles
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https://hal-pasteur.archives-ouvertes.fr/pasteur-03462347
Contributor : Mart Krupovic Connect in order to contact the contributor
Submitted on : Wednesday, December 1, 2021 - 5:25:24 PM
Last modification on : Friday, December 3, 2021 - 3:07:54 AM
Contributor : Mart Krupovic Connect in order to contact the contributor
Submitted on : Wednesday, December 1, 2021 - 5:25:24 PM
Last modification on : Friday, December 3, 2021 - 3:07:54 AM
File
Dutilh2021CurrOpinVirol.pdf
Publication funded by an institution
Licence
Distributed under a Creative Commons Attribution 4.0 International License
Identifiers
- HAL Id : pasteur-03462347, version 1
- DOI : 10.1016/j.coviro.2021.10.011
- PUBMED : 34781105
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Citation
Bas Dutilh, Arvind Varsani, Yigang Tong, Peter Simmonds, Sead Sabanadzovic, et al.. Perspective on taxonomic classification of uncultivated viruses. Current Opinion in Virology, Elsevier, 2021, 51, pp.207-215. ⟨10.1016/j.coviro.2021.10.011⟩. ⟨pasteur-03462347⟩
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