Journal articles

A community resource for paired genomic and metabolomic data mining

Michelle A. Schorn ¹ Stefan Verhoeven ² Lars Ridder ² Florian Huber ² Deepa D. Acharya ³ Alexander A. Aksenov ⁴ Gajender Aleti ⁴ Jamshid Amiri Moghaddam ⁵ Allegra T. Aron ⁴ Saefuddin Aziz ^{6, 7} Anelize Bauermeister ^{4, 8} Katherine D. Bauman ⁴ Martin Baunach ⁹ Christine Beemelmanns ⁵ J. Michael Beman ¹⁰ María Victoria Berlanga-Clavero ¹¹ Alex A. Blacutt ¹² Helge B. Bode ^{13, 14, 15} Anne Boullie ¹⁶ Asker Brejnrod ⁴ Tim S. Bugni ³ Alexandra Calteau ¹⁷ Liu Cao ¹⁸ Víctor J. Carrión ^{19, 20} Raquel Castelo-Branco ^{21, 22} Shaurya Chanana ³ Alexander B. Chase ⁴ Marc G. Chevrette ³ Leticia V. Costa-Lotufo ⁸ Jason M. Crawford ^{23, 24} Cameron R. Currie ³ Bart Cuypers ^{25, 26} Tam Dang ²⁷ Tristan de Rond ⁴ Alyssa M. Demko ⁴ Elke Dittmann ⁹ Chao Du ¹⁹ Christopher Drozd ¹² Jean-Claude Dujardin ²⁶ Rachel J. Dutton ⁴ Anna Edlund ^{28, 4} David P. Fewer ²² Kyo Bin Kang Chung Sub Kim Ki Hyun Kim Seoung Rak Lee Johannes Sørensen Neha Garg Julia M Gauglitz Emily C Gentry Lena Gerwick Evgenia Glukhov Harald Gross Muriel Gugger ¹⁶ Dulce G Guillén Matus Eric J N Helfrich Benjamin-Florian Hempel Jae-Seoun Hur Marianna Iorio Paul R Jensen Kyo Bin Kang Leonard Kaysser Neil L Kelleher Chung Sub Kim Ki Hyun Kim Irina Koester Gabriele M König Tiago Leao Seoung Rak Lee yi-yuan Lee Xuanji Li Jessica C Little Katherine N Maloney Daniel Männle Christian Martin H. Andrew C Mcavoy Willam W Metcalf Hosein Mohimani Carlos Molina-Santiago Bradley S Moore Michael W Mullowney Mitchell Muskat Louis-Félix Nothias Ellis O’neill Elizabeth Parkinson Daniel Petras Jörn Piel Emily Pierce Karine Pires Raphael Reher Diego Romero M. Caroline Caroline Roper Michael Rust Hamada Saad Carmen Saenz Laura M Sanchez Christian Martin ²⁹ Søren Johannes Sørensen Margherita Sosio Roderich D Süssmuth Douglas Sweeney Kapil Tahlan Regan J Thomson Nicholas J Tobias Amaro E Trindade-Silva Gilles P van Wezel Mingxun Wang Kelly C Weldon Fan Zhang Nadine Ziemert Katherine R Duncan Max Crüsemann Simon Rogers Pieter C Dorrestein ⁴ Marnix H Medema ¹ Justin J J van Der Hooft ¹

1 WUR - Wageningen University and Research [Wageningen]

2 Netherlands eScience Center

3 University of Wisconsin-Madison

4 UC San Diego - University of California [San Diego]

5 Leibniz Institute for Natural Product Research and Infection Biology (Hans Knoell Institute)

6 Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen

7 Jenderal Soedirman University [Purwokerto, Indonesia]

8 USP - Universidade de São Paulo

9 University of Potsdam

10 University of California [Merced]

11 Universidad de Málaga [Málaga] = University of Málaga [Málaga]

12 UCR - University of California [Riverside]

13 Goethe-University Frankfurt am Main

14 Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung

15 Max Planck Institute for Terrestrial Microbiology

16 Collection des Cyanobactéries

17 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]

18 CMU - Carnegie Mellon University [Pittsburgh]

19 Leiden University

20 NIOO-KNAW - Netherlands Institute of Ecology

21 Universidade do Porto = University of Porto

22 Helsingin yliopisto = Helsingfors universitet = University of Helsinki

23 Yale University [New Haven]

24 YSM - Yale School of Medicine [New Haven, Connecticut]

25 UA - University of Antwerp

26 ITM - Institute of Tropical Medicine [Antwerp]

27 TU - Technische Universität Berlin

28 JCVI - J. Craig Venter Institute [La Jolla, USA]

29 Instituto de Investigaciones Científicas y Servicios de Alta Tecnología [Panama]

Abstract : Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.

Document type :

Journal articles

Domain :

Life Sciences [q-bio]

Complete list of metadata

https://hal-pasteur.archives-ouvertes.fr/pasteur-03153704
Contributor : Bénédicte BENEDIC Connect in order to contact the contributor
Submitted on : Friday, February 26, 2021 - 4:10:23 PM
Last modification on : Tuesday, May 3, 2022 - 6:26:04 PM