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Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

Alexander Leitner 1 Alexandre Bonvin 2 Christoph Borchers 3, 4, 5 Robert Chalkley 6 Julia Chamot-Rooke 7 Colin Combe 8 Jürgen Cox 9 Meng-Qiu Dong 10 Lutz Fischer 11 Michael Götze 1 Fabio Gozzo 12 Albert Heck 2 Michael Hoopmann 13 Lan Huang 14 Yasushi Ishihama 15 Andrew Jones 16 Nir Kalisman 17 Oliver Kohlbacher 18, 19 Karl Mechtler 20 Robert Moritz 13 Eugen Netz 18, 19 Petr Novak 21 Evgeniy Petrotchenko 4, 5 Andrej Sali 6 Richard Scheltema 2 Carla Schmidt 22 David Schriemer 23 Andrea Sinz 22 Frank Sobott 24, 25 Florian Stengel 26 Konstantinos Thalassinos 27, 28 Henning Urlaub 29 Rosa Viner 30 Juan Vizcaíno 31 Marc Wilkins 32 Juri Rappsilber 8, *
* Corresponding author
1 ETH Zürich - Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich]
2 Utrecht University [Utrecht]
3 UVIC - University of Victoria [Canada]
4 Lady Davis Institute for Medical Research [Montréal]
5 Skoltech - Skolkovo Institute of Science and Technology [Moscow]
6 UCSF - University of California [San Francisco]
7 UTechS MSBio - Spectrométrie de Masse pour la Biologie – Mass Spectrometry for Biology
8 University of Edinburgh
9 MPIB - Max Planck Institute of Biochemistry
10 Number 7 Science Park Road - National Institute of Biological Sciences [Beijing, China]
11 TU - Technische Universität Berlin
12 UNICAMP - University of Campinas [Campinas]
13 ISB - Institute for Systems Biology [Seattle]
14 UCI - University of California [Irvine]
15 Kyoto University [Kyoto]
16 University of Liverpool
17 HUJ - The Hebrew University of Jerusalem
18 University of Tübingen
19 Max Planck Institute for Developmental Biology
20 IMP - Research Institute of Molecular Pathology
21 Charles University [Prague]
22 Martin-Luther-University Halle-Wittenberg
23 University of Calgary
24 University of Leeds
25 UA - University of Antwerp
26 University of Konstanz
27 Birkbeck College [University of London]
28 UCL - University College of London [London]
29 Max-Planck-Institut für Biophysikalische Chemie - Max Planck Institute for Biophysical Chemistry [Göttingen]
30 Thermo Fisher Scientific (Bremen) GmbH
31 EMBL-EBI - European Bioinformatics Institute [Hinxton]
32 UNSW - University of New South Wales [Sydney]
Abstract : Cross-linking mass spectrometry (MS) has substantially matured as a method over the past 2 decades through parallel development in multiple labs, demonstrating its applicability to protein structure determination, conformation analysis, and mapping protein interactions in complex mixtures. Cross-linking MS has become a much-appreciated and routinely applied tool, especially in structural biology. Therefore, it is timely that the community commits to the development of methodological and reporting standards. This white paper builds on an open process comprising a number of events at community conferences since 2015 and identifies aspects of Cross-linking MS for which guidelines should be developed as part of a Cross-linking MS standards initiative.
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https://hal-pasteur.archives-ouvertes.fr/pasteur-03070494
Contributor : Virginie Portelette <>
Submitted on : Tuesday, December 15, 2020 - 7:30:13 PM
Last modification on : Thursday, May 27, 2021 - 1:54:07 PM

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Alexander Leitner, Alexandre Bonvin, Christoph Borchers, Robert Chalkley, Julia Chamot-Rooke, et al.. Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry. Structure, Elsevier (Cell Press), 2020, 28 (11), pp.1259-1268. ⟨10.1016/j.str.2020.09.011⟩. ⟨pasteur-03070494⟩

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