Journal articles

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Carla Mavian ^{1, *} Sergei Kosakovsky Pond ² Simone Marini ¹ Brittany Rife Magalis ¹ Anne-Mieke Vandamme ^{3, 4} Simon Dellicour ^{3, 5} Samuel V. Scarpino ⁶ Charlotte Houldcroft ⁷ Christian Julián Villabona-Arenas ⁸ Taylor K. Paisie ¹ Nídia S. Trovão ⁹ Christina Boucher ¹ yun Zhang ¹⁰ Richard H. Scheuermann ^{10, 11} Olivier Gascuel ¹² Tommy Tsan-yuk Lam ¹³ Marc A. Suchard ¹⁴ Ana Abecasis ⁴ Eduan Wilkinson ¹⁵ Tulio de Oliveira ¹⁵ Ana I. Bento ¹⁶ Heiko A. Schmidt ¹⁷ Darren Martin ¹⁸ James Hadfield ¹⁹ Nuno Faria ²⁰ Nathan D. Grubaugh ²¹ Richard A. Neher ²² Guy Baele ³ Philippe Lemey ³ Tanja Stadler ²³ Jan Albert ²⁴ Keith A. Crandall ²⁵ Thomas Leitner ²⁶ Alexandros Stamatakis ^{27, 28} Mattia Prosperi ^{1, *} Marco Salemi ^{1, *}

* Corresponding author

1 UF - University of Florida [Gainesville]

2 Temple University [Philadelphia]

3 KU Leuven - Catholic University of Leuven - Katholieke Universiteit Leuven

4 NOVA - Universidade Nova de Lisboa = NOVA University Lisbon

5 ULB - Université libre de Bruxelles

6 Northeastern University [Boston]

7 CAM - University of Cambridge [UK]

8 LSHTM - London School of Hygiene and Tropical Medicine

9 Fogarty International Center

10 JCVI - J. Craig Venter Institute [La Jolla, USA]

11 UC San Diego - University of California [San Diego]

12 Bioinformatique évolutive - Evolutionary Bioinformatics

13 HKU - The University of Hong Kong

14 David Geffen School of Medicine [Los Angeles]

15 UKZN - University of KwaZulu-Natal [Durban, Afrique du Sud]

16 Indiana University [Bloomington]

17 University of Vienna [Vienna]

18 University of Cape Town

19 FHCRC - Fred Hutchinson Cancer Research Center [Seattle]

20 University of Oxford [Oxford]

21 YSPH - Yale School of Public Health

22 Biozentrum [Basel, Suisse]

23 D-BSSE - Department of Biosystems Science and Engineering [ETH Zürich]

24 Karolinska Institutet [Stockholm]

25 Milken Institute School of Public Health

26 LANL - Los Alamos National Laboratory

27 HITS - Heidelberg Institute for Theoretical Studies

28 KIT - Karlsruher Institut für Technologie

Document type :

Journal articles

Domain :

Computer Science [cs] / Bioinformatics [q-bio.QM]

Complete list of metadata

https://hal-pasteur.archives-ouvertes.fr/pasteur-03037656
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Submitted on : Thursday, December 3, 2020 - 10:58:50 AM
Last modification on : Tuesday, May 31, 2022 - 10:20:16 AM
Long-term archiving on: : Thursday, March 4, 2021 - 6:47:07 PM