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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Carla Mavian 1, * Sergei Kosakovsky Pond 2 Simone Marini 1 Brittany Rife Magalis 1 Anne-Mieke Vandamme 3, 4 Simon Dellicour 3, 5 Samuel Scarpino 6 Charlotte Houldcroft 7 Christian Julián Villabona-Arenas 8 Taylor Paisie 1 Nídia Trovão 9 Christina Boucher 1 Yun Zhang 10 Richard Scheuermann 10, 11 Olivier Gascuel 12 Tommy Tsan-Yuk Lam 13 Marc Suchard 14 Ana Abecasis 4 Eduan Wilkinson 15 Tulio de Oliveira 15 Ana Bento 16 Heiko Schmidt 17 Darren Martin 18 James Hadfield 19 Nuno Faria 20 Nathan Grubaugh 21 Richard Neher 22 Guy Baele 3 Philippe Lemey 3 Tanja Stadler 23 Jan Albert 24 Keith Crandall 25 Thomas Leitner 26 Alexandros Stamatakis 27, 28 Mattia Prosperi 1, * Marco Salemi 1, *
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https://hal-pasteur.archives-ouvertes.fr/pasteur-03037656
Contributor : Anna Zhukova <>
Submitted on : Thursday, December 3, 2020 - 10:58:50 AM
Last modification on : Thursday, May 27, 2021 - 1:54:07 PM
Long-term archiving on: : Thursday, March 4, 2021 - 6:47:07 PM

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Carla Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne-Mieke Vandamme, et al.. Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2020, 117 (23), pp.12522-12523. ⟨10.1073/pnas.2007295117⟩. ⟨pasteur-03037656⟩

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