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Journal articles

The Cytoscape Automation app article collection

Abstract : Cytoscape is the premiere platform for interactive analysis, integration and visualization of network data. While Cytoscape itself delivers much basic functionality, it relies on community-written apps to deliver specialized functions and analyses. To date, Cytoscape's CyREST feature has allowed researchers to write workflows that call basic Cytoscape functions, but provides no access to its high value app-based functions. With Cytoscape Automation, workflows can now call apps that have been upgraded to expose their functionality. This article collection is a resource to assist readers in quickly and economically leveraging such apps in reproducible workflows that scale independently to large data sets and production runs.
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Submitted on : Tuesday, October 20, 2020 - 3:12:19 PM
Last modification on : Tuesday, May 3, 2022 - 3:14:05 PM
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Barry Demchak, David Otasek, Alexander Pico, Gary D Bader, Keiichiro Ono, et al.. The Cytoscape Automation app article collection. F1000Research, Faculty of 1000, 2018, 7, pp.800. ⟨10.12688/f1000research.15355.1⟩. ⟨pasteur-02972651⟩



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