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Journal articles
The Cytoscape Automation app article collection
Abstract : Cytoscape is the premiere platform for interactive analysis, integration and visualization of network data. While Cytoscape itself delivers much basic functionality, it relies on community-written apps to deliver specialized functions and analyses. To date, Cytoscape's CyREST feature has allowed researchers to write workflows that call basic Cytoscape functions, but provides no access to its high value app-based functions. With Cytoscape Automation, workflows can now call apps that have been upgraded to expose their functionality. This article collection is a resource to assist readers in quickly and economically leveraging such apps in reproducible workflows that scale independently to large data sets and production runs.
Cited literature [8 references]
https://hal-pasteur.archives-ouvertes.fr/pasteur-02972651
Contributor : Benno Schwikowski <>
Submitted on : Tuesday, October 20, 2020 - 3:12:19 PM
Last modification on : Wednesday, October 21, 2020 - 3:31:23 AM
Long-term archiving on: : Thursday, January 21, 2021 - 7:09:51 PM
Contributor : Benno Schwikowski <>
Submitted on : Tuesday, October 20, 2020 - 3:12:19 PM
Last modification on : Wednesday, October 21, 2020 - 3:31:23 AM
Long-term archiving on: : Thursday, January 21, 2021 - 7:09:51 PM
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Distributed under a Creative Commons Attribution 4.0 International License