Skip to Main content Skip to Navigation
Journal articles

SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis

Stevenn Volant 1 Pierre Lechat 1 Perrine Woringer 1 Laurence Motreff 2 Pascal Campagne 1 Christophe Malabat 1 Sean Kennedy 2 Amine Ghozlane 1, 2, *
* Corresponding author
1 Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB
2 C2RT - Pôle Biomics
Abstract : Comparing the composition of microbial communities among groups of interest (e.g., patients vs healthy individuals) is a central aspect in microbiome research. It typically involves sequencing, data processing, statistical analysis and graphical display. Such an analysis is normally obtained by using a set of different applications that require specific expertise for installation, data processing and in some cases, programming skills.
Keywords : Differential analysis Metagenomics Visualization Web application
Document type :
Journal articles
Complete list of metadatas

Cited literature [52 references]  Display  Hide  Download
https://hal-pasteur.archives-ouvertes.fr/pasteur-02951458
Contributor : Christophe Malabat <>
Submitted on : Monday, September 28, 2020 - 4:36:50 PM
Last modification on : Thursday, October 1, 2020 - 3:25:21 AM

File

Vignette du document
s12859-020-03666-4.pdf
Publication funded by an institution

Licence

Distributed under a Creative Commons Attribution 4.0 International License

Identifiers

Collections

PASTEUR | CNRS

Citation

Stevenn Volant, Pierre Lechat, Perrine Woringer, Laurence Motreff, Pascal Campagne, et al.. SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis. BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.345. ⟨10.1186/s12859-020-03666-4⟩. ⟨pasteur-02951458⟩

Export

BibTeX TEI DC DCterms EndNote

Share

Metrics

Record views

72

Files downloads

122