J. Brault, C. Khou, J. Basset, L. Coquand, V. Fraisier et al., Comparative analysis between flaviviruses reveals specific neural stem cell tropism for zika virus in the mouse developing neocortex, EBioMedicine, vol.10, issue.63, p.90068, 2016.
URL : https://hal.archives-ouvertes.fr/pasteur-01441052

B. Hajj, M. E. Beheiry, I. Izeddin, X. Darzacq, and M. Dahan, Accessing the third dimension in localization-based super-resolution microscopy, Physical Chemistry Chemical Physics, vol.16, issue.31, pp.16340-16348, 2014.

M. E. Beheiry and M. Dahan, Visp: representing single-particle localizations in 265 three dimensions, Nature Methods, vol.10, issue.8, pp.689-690, 2013.

S. A. Schalbetter, A. Goloborodko, G. Fudenberg, J. Belton, C. Miles et al., Smc complexes differentially compact mitotic chromosomes according to genomic context, Nature Cell Biol-270 ogy, vol.19, pp.1071-1080, 2017.

F. Argelaguet and C. Andujar, A survey of 3d object selection techniques for virtual environments, Computers & Graphics, vol.37, issue.3, pp.121-136, 2017.
URL : https://hal.archives-ouvertes.fr/hal-00907787

D. F. Keefe and T. Isenberg, Reimagining the scientific visualization interaction 275 paradigm, IEEE Computer, vol.46, issue.5, pp.51-57, 2013.

N. Padmanaban, R. Konrad, T. Stramer, E. A. Cooper, and G. Wetzstein, Optimizing virtual reality for all users through gaze-contingent and adaptive 280 focus displays, Proceedings of the National Academy of Sciences, vol.114, issue.9, pp.2183-2188, 2014.

D. Duncan, R. Garner, I. Zrantchev, T. Ard, B. Newman et al., Using virtual reality to improve performance and user experience in manual correction of mri segmentation er-285 rors by non-experts, Journal of Digital Imaging, 2018.

M. Connor, H. M. Deeks, E. Dawn, O. Metatla, A. Roudaut et al., Sampling molecular confor-290 mations and dynamics in a multiuser virtual reality framework, Science Advances, vol.4, pp.1-9, 2018.

P. M. Maloca, J. E. De-carvalho, T. Heeren, P. W. Hasler, F. Mushtaq et al., High-performance virtual reality volume rendering 295 13 of original optical coherence tomography point-cloud data enhanced with real-time ray casting, Translational Vision Science and Technology, vol.7, issue.4, pp.1-11, 2018.

R. P. Theart, B. Loos, and T. R. Niesler, Virtual reality assisted microscopy data visualization and colocalization analysis, BMC Bioinformatics, vol.18, pp.1-16, 2016.

B. Hajj, J. Wisniewski, M. E. Beheiry, J. Chen, A. Revyakin et al., Whole-cell, multicolor superresolution imaging using volumetric multifocus microscopy, Proceedings of the National Academy of Sciences, vol.111, issue.49, pp.17480-17485, 2014.

M. E. Beheiry, M. Dahan, and J. Masson, Inferencemap: mapping of singlemolecule dynamics with bayesian inference, Nature Methods, vol.12, issue.7, pp.594-595, 2015.

R. Salomon-ferrer, D. A. Case, and R. C. Walker, An overview of the amber biomolecular simulation package, Wiley Interdisciplinary Reviews: Compu-310 tational Molecular Science, vol.3, 2012.

S. Doutreligne, T. Cragnolini, S. Pasquali, P. Derreumaux, and M. Baaden, Unitymol: Interactive scientific visualization for integrative biology, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01498055

, IEEE 4th Symposium on Large Data Analysis and Visualization (LDAV), 2014.

X. Martinez, S. Doutreligne, J. Rodrigues, P. Ghossoub, M. Trellet et al., Open framework to explore and manipulate molecular structures and trajectories in vr

D. Xin, L. Ma, J. Liu, S. Macke, S. Song et al., Accelerating 320 human-in-the-loop machine learning: Challenges and opportunities

S. Ren, K. He, R. B. Girshick, and J. Sun, Faster R-CNN: towards real-time object detection with region proposal networks

M. Gillies, R. Fiebrink, A. Tanaka, J. Garcia, F. Bevilacqua et al., , p.325

F. Nunnari, W. Mackay, S. Amershi, B. Lee, and N. , Proceedings of the 2016 CHI Conference Extended Abstracts on Human Factors in Computing Systems

D. Acuna, H. Ling, A. Kar, and S. Fidler, Efficient interactive annotation of segmentation datasets with polygon-rnn++, Proceedings of the IEEE Con-330 ference on Computer Vision and Pattern Recognition, pp.859-868, 2018.

W. Usher, P. Klacansky, F. Federer, P. Bremer, A. Knoll et al., A virtual reality visualization tool for neuron tracing, IEEE Transactions on Visualization and Computer Graphics, vol.24, issue.1, pp.994-1003, 2018.

C. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, Ilastik: Interactive learning and segmentation toolkit, IEEE International Symposium on Biomedical Imaging: From Nano to Macro, p.230, 2011.

I. Arganda-carreras, V. Kaynig, C. Rueden, and K. W. Eliceiri, J. Schindelin, p.340

A. Cardona and H. S. Seung, Trainable weka segmentation: a machine learning tool for microscopy pixel classification, Bioinformatics, vol.33, issue.15, pp.2424-2426, 2017.

A. A. Wanner, C. Genoud, T. Masudi, L. Siksou, and R. W. Friedrich, Dense em-based reconstruction of the interglomerular projectome in the zebrafish 345 olfactory bulb, Nature Neuroscience, vol.19, pp.816-825, 2016.

M. Januszewski, J. Kornfeld, P. H. Li, A. Pope, T. Blakely et al., High-precision auto-15 mated reconstruction of neurons with flood-filling networks, Nature Meth-350 ods, vol.15, issue.8, pp.605-610, 2018.

M. Joesch, D. Mankus, M. Yamagata, A. Shahbazi, R. Schalek et al., Reconstruction of genetically identified neurons imaged by serial-section electron microscopy, p.15015, 2016.

J. Funke, F. D. Tschopp, W. Grisaitis, A. Sheridan, C. Singh et al., Large scale image segmentation with structured loss based deep learning for connectome reconstruction, IEEE Transactions on Pattern Analysis and Machine

C. Wolff, J. Tinevez, T. Pietzsch, E. Stamataki, B. Harich et al., , p.360

S. Preibisch, S. Shorte, P. J. Keller, P. Tomancak, and A. Pavlopoulos, Multiview light-sheet imaging and tracking with the mamut software reveals the cell lineage of a direct developing arthropod limb, p.34410, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-02616453

C. Crassin, F. Neyret, S. Lefebvre, and E. Eisemann, Gigavoxels: Ray-guided 365 streaming for efficient and detailed voxel rendering, Proceedings of the 2009 Symposium on Interactive 3D Graphics and Games, p.15, 2009.

J. Beyer, M. Hadwiger, and H. Pfister, State?of?the?art in gpu?based large?scale volume visualization, vol.34, pp.370-383, 2015.

J. Vera and G. Santos, Can gamification contribute to computer modelingdriven biomedical research?, Frontiers in Physiology, vol.9, p.908, 2018.

C. B. Eiben, J. B. Siegel, J. B. Bale, S. Cooper, F. Khatib et al., , p.375

F. Players, B. L. Stoddard, Z. Popovic, and D. Baker,

, activity through backbone remodeling guided by foldit players, Nature Biotechnology, vol.30, issue.2, pp.190-192, 2012.

D. Boassa, J. Lee, G. Enciso, C. Chander, T. Lou et al., Chlamydia trachomatis, human 380 hela