Salmonella infection in Batavia (Java), with particular reference to the diagnosis of the type of infection, Mededeelingen van den Dienst der Volksgzondheid in Nederlandsch-Indië, vol.24, pp.98-118, 1935. ,
Bakteriologische und klinische Erfahrungen über Infektionen mit d-weinsäurevergärenden Paratyphus B-Bacillen, Z Hyg Infektionskr, vol.120, pp.149-54, 1937. ,
Differential diagnosis and pathogenicity of Salmonella Java and Salmonella Paratyphi B ,
, Z Hyg Infektionskr, vol.141, pp.546-50, 1955.
Types of Salmonella Paratyphi B and their phylogenetic significance, J Med Microbiol, vol.26, pp.285-93, 1988. ,
Molecular characterization of multiresistant d-tartrate-positive Salmonella enterica serovar Paratyphi B isolates, J Clin Microbiol, vol.40, pp.3184-3191, 2002. ,
Investigation of human infections with Salmonella enterica serovar Java in Scotland and possible association with imported poultry, Euro Surveill, vol.8, pp.35-40, 2003. ,
Multipleantibiotic resistance in Salmonella enterica serotype Paratyphi B isolates collected in France between 2000 and 2003 is due mainly to strains harboring Salmonella genomic islands 1, 1-B, and 1-C, Antimicrob Agents Chemother, vol.49, pp.2793-801, 2005. ,
Multidrug-resistant Salmonella Java, Emerg Infect Dis, vol.11, pp.170-171, 2005. ,
Multinational Salmonella Paratyphi B variant Java (Salmonella Java) outbreak, Euro Surveill, vol.12, pp.71220-71222, 2007. ,
Extended-spectrum ?-lactamaseand AmpC ?-lactamase-producing D-tartrate-positive Salmonella enterica serovar Paratyphi B from broilers and human patients in Belgium, 2008-10, J Antimicrob Chemother, vol.69, pp.1257-64, 2014. ,
Salmonella enterica serotype Typhimurium DT 104 antibiotic resistance genomic island I in serotype Paratyphi B, Emerg Infect Dis, vol.8, pp.430-433, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-02679553
,
, Provincial Public Health Laboratories. Emergence of multidrug-resistant Salmonella Paratyphi B dT+, Canada. Emerg Infect Dis, vol.10, pp.1307-1317, 2004.
Sporadic infections of Salmonella Paratyphi B, var. Java associated with fish tanks, Can J Public Health, vol.96, pp.471-475, 2005. ,
Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, Epidemiol Infect, vol.146, pp.1461-1468, 2015. ,
New product, old problem(s): multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) infections linked to raw sprouted nut butters, Epidemiol Infect, vol.8, pp.1-6, 2015. ,
Aquariums as reservoirs for multidrug-resistant Salmonella Paratyphi B. Emerg Infect Dis, vol.12, pp.507-517, 2006. ,
Emergence and evolution of multiply antibiotic-resistant Salmonella enterica serovar Paratyphi B D-tartrate-utilizing strains containing SGI1, Antimicrob Agents Chemother, vol.53, pp.2319-2345, 2009. ,
Human infections attributable to the D-tartratefermenting variant of Salmonella enterica serovar Paratyphi B in Germany originate in reptiles and, on rare occasions, poultry, Appl Environ Microbiol, vol.78, pp.7347-57, 2012. ,
Explosive increase of Salmonella Java in poultry in the Netherlands: consequences for public health, Euro Surveill, vol.8, pp.31-36, 2003. ,
, Centrum voor Onderzoek in Diergeneeskunde en Agrochemie. Centre d'Etude et des Recherches Vétérinaires et Agrochimiques (CODA-CERVA). Salmonella serotypes analysed at the CODA-CERVA in 2013, Food Chain Security and Environment, 2014.
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica, PLoS Pathog, vol.8, p.1002776, 2012. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01117433
What's in a name? Species-wide wholegenome sequencing resolves invasive and noninvasive lineages of Salmonella enterica serotype Paratyphi B, MBio, vol.7, pp.1-9, 2016. ,
Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England and Wales, J Antimicrob Chemother, vol.71, pp.2300-2305, 2016. ,
Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B, J Antimicrob Chemother, vol.72, pp.3317-3341, 2017. ,
Phylogenomic investigation of IncI1-I? plasmids harboring bla CMY-2 and bla SHV-12 in Salmonella enterica and Escherichia coli in multiple countries, Antimicrob Agents Chemother, vol.63, pp.2546-2564, 2019. ,
Prevalence, risk factors, and antimicrobial resistance profiles of Salmonella from commercial broiler farms in two important poultryproducing regions of Colombia, J Food Prot, vol.75, pp.874-83, 2012. ,
Counts, serovars, and antimicrobial resistance phenotypes of Salmonella on raw chicken meat at retail in Colombia, J Food Prot, vol.77, pp.227-262, 2014. ,
Prevalence, resistance patterns, and risk factors for antimicrobial resistance in bacteria from retail chicken meat in Colombia, J Food Prot, vol.78, pp.751-760, 2015. ,
Salmonella on raw poultry in retail markets in Guatemala: levels, antibiotic susceptibility, and serovar distribution, J Food Prot, vol.78, pp.1642-50, 2015. ,
Reduced susceptibility to quinolones among Salmonella serotypes isolated from poultry at slaughter in Venezuela, J Food Prot, vol.70, pp.2030-2035, 2007. ,
Genomic characterization of extended-spectrum cephalosporin-resistant Salmonella enterica in the Colombian poultry chain, Front Microbiol, vol.9, p.2431, 2018. ,
The establishment of the Colombian Integrated Program for Antimicrobial Resistance Surveillance (COIPARS): a pilot project on poultry farms, slaughterhouses and retail market, Zoonoses Public Health, vol.62, issue.1, pp.58-69, 2015. ,
Ministerio de Salud. Prevalence of Salmonella spp. in meat and chicken products, 2009. ,
, Ministry of Agriculture and Livestock, Costa Rican Institute for Research and Training in Nutrition and Health and Ministry of Health, 2011.
Monitoring of antimicrobial resistance and antibiotic usage in animals in the Netherlands in 2016, 2017. ,
A genomic overview of the population structure of Salmonella, PLoS Genet, vol.14, p.1007261, 2018. ,
The clinical and microbiological characteristics of enteric fever in Cambodia, PLoS Negl Trop Dis, vol.11, 2008. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02045954
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J Comput Biol, vol.19, pp.455-77, 2012. ,
Identification of acquired antimicrobial resistance genes, J Antimicrob Chemother, vol.67, pp.2640-2644, 2012. ,
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing, Antimicrob Agents Chemother, vol.58, pp.3895-903, 2014. ,
Multilocus sequence typing of totalgenome-sequenced bacteria, J Clin Microbiol, vol.50, pp.1355-61, 2012. ,
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes, Genome Biol, vol.15, p.524, 2014. ,
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins, Nucleic Acids Res, vol.43, p.15, 2015. ,
BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evol Biol, vol.7, 2007. ,
Prokka: rapid prokaryotic genome annotation, Bioinformatics, vol.30, pp.2068-2077, 2014. ,
Roary: rapid large-scale prokaryote pan genome analysis, Bioinformatics, vol.31, pp.3691-3694, 2015. ,
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes, Genome Res, vol.25, pp.1043-55, 2015. ,
PHASTER: a better, faster version of the PHAST phage search tool, Nucleic Acids Res, vol.44, issue.W1, pp.16-21, 2016. ,
Distinguishable epidemics of multidrugresistant Salmonella Typhimurium DT104 in different hosts, Science, vol.341, pp.1514-1521, 2013. ,
Poultry farming in Colombia ,
Nacional de Avicultores de Colombia (Fenavi)-Fondo Nacional Avícola (Fonav), 2002. ,
Spread of extended spectrum cephalosporinase-producing Escherichia coli clones and plasmids from parent animals to broilers and to broiler meat in a production without use of cephalosporins. Foodborne Pathog Dis, vol.11, pp.740-746, 2014. ,