Anomalous Diffusion of Fluorescent Probes inside Living Cell Investigated by Spatially-Resolved Fluorescence Correlation Spectroscopy, J. Mol. Biol, vol.298, p.222836, 2000. ,
Diffusion Models of Protein Folding, Phys. Chem. Chem. Phys, vol.13, p.21842082, 2011. ,
Single-Particle Trajectories Reveal Two-State Diffusion-Kinetics of hOGG1 Proteins on DNA, Nucleic Acids Res, vol.46, p.29361033, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01690314
Non-Specific Interactions Govern Cytosolic Diffusion of Nanosized Objects in Mammalian Cells, Nat. Mater, vol.17, p.29967464, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01871099
Diffusion Dynamics of Glycine Receptors Revealed by Single-Quantum Dot Tracking, Science, vol.302, p.14564008, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-00002449
Linking Nanoscale Dynamics of AMPA Receptor Organization to Plasticity of Excitatory Synapses and Learning, J. Neurosci. Off. J. Soc. Neurosci, vol.38, p.30381423, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02352552
Mobility of Calcium Channels in the Presynaptic Membrane, Neuron, vol.86, p.25892305, 2015. ,
Bayesian Analysis of Single-Particle Tracking Data Using the Nested-Sampling Algorithm: Maximum-Likelihood Model Selection Applied to Stochastic-Diffusivity Data, Phys. Chem. Chem. Phys. PCCP, vol.20, p.30255886, 2018. ,
Towards a Full Quantitative Description of Single-Molecule Reaction Kinetics in Biological Cells, Phys. Chem. Chem. Phys. PCCP, vol.20, p.29873351, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01958227
Diffusion of Integral Membrane Proteins in Protein-Rich Membranes, J. Phys. Chem. Lett, vol.8, p.28823153, 2017. ,
Manipulation and Motion of Organelles and Single Molecules in Living Cells, Chem. Rev, vol.117, p.28156096, 2017. ,
Noninvasive Inference of the Molecular Chemotactic Response Using Bacterial Trajectories, Proc. Natl. Acad. Sci, vol.109, p.22307649, 2012. ,
The Role of Adaptation in Bacterial Speed Races, PLOS Comput. Biol, vol.12, 2016. ,
Inflammatory Chemokines Direct and Restrict Leukocyte Migration within Live Tissues as Glycan-Bound Gradients, Curr. Biol. CB, vol.22, p.23219724, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00880492
Navigating in Tissue Mazes: Chemoattractant Interpretation in Complex Environments, Curr. Opin. Cell Biol, vol.36, 2015. ,
Persistence and Adaptation in Immunity: T Cells Balance the Extent and Thoroughness of Search, PLoS Comput. Biol, vol.12, 2016. ,
Actin Flows Mediate a Universal Coupling between Cell Speed and Cell Persistence, Cell, vol.161, p.25799384, 2015. ,
Reconstructing a Random Potential from Its Random Walks, EPL Europhys. Lett, vol.81, pp.295-5075, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00142545
Coordinate-Dependent Diffusion in Protein Folding, Proc. Natl. Acad. Sci, vol.107, 2010. ,
InferenceMAP: Mapping of Single-Molecule Dynamics with Bayesian Inference, Nat. Methods, vol.12, p.26125589, 2015. ,
Inferring Maps of Forces inside Cell Membrane Microdomains, Phys. Rev. Lett, vol.102, p.19257479, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00811680
Statistical Methods for Large Ensembles of Super-Resolution Stochastic Single Particle Trajectories in Cell Biology, Annu. Rev. Stat. Appl, vol.4, pp.2326-8298, 2017. ,
Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis, Biophys. J, vol.109, pp.966-974, 2015. ,
Single-Molecule Force Spectroscopy: Optical Tweezers, Magnetic Tweezers and Atomic Force Microscopy, Nat. Methods, vol.5, pp.1548-7091, 2008. ,
Simultaneous, Coincident Optical Trapping and Single-Molecule Fluorescence, Nat. Methods, vol.1, pp.1548-7091, 2004. ,
Control of Transmembrane Protein Diffusion within the Postsynaptic Density Assessed by Simultaneous Single-Molecule Tracking and Localization Microscopy, Front. Synaptic Neurosci, vol.8, pp.1663-3563, 2016. ,
Single-Molecule Imaging Reveals Receptor-G Protein Interactions at Cell Surface Hot Spots, Nature, vol.550, pp.28-0836, 2017. ,
Gradients of Rac1 Nanoclusters Support Spatial Patterns of Rac1 Signaling, Cell Rep, vol.21, p.22111247, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01637091
Single-Particle Diffusion Characterization by Deep Learning, Biophysical Journal, vol.117, p.63495, 2019. ,
Non-Ergodic, and Non-Fickian Diffusion of Tracers in Mucin Hydrogels, Soft Matter, vol.15, pp.1744-6848, 2019. ,
Single Trajectory Characterization via Machine Learning, New J. Phys, vol.22, 2020. ,
, Essentials of Brownian Motion and Diffusion Series Title: Mathematical Surveys and Monographs, 1981.
Brownian Walker in a Confined Geometry Leading to a Space-Dependent Diffusion Coefficient, Phys. Stat. Mech. Its Appl, vol.304, p.3784371, 2002. ,
Measurement of the Hydrodynamic Corrections to the Brownian Motion of Two Colloidal Spheres, The Journal of Chemical Physics, vol.106, pp.1089-7690, 1997. ,
Resonances Arising from Hydrodynamic Memory in Brownian Motion -The Colour of Thermal Noise, Nature, vol.478, 2011. ,
The Colour of Thermal Noise in Classical Brownian Motion: A Feasibility Study of Direct Experimental Observation, New J. Phys, vol.7, pp.1367-2630, 2005. ,
100 Years after Smoluchowski: Stochastic Processes in Cell Biology, J. Phys. A: Math. Theor, vol.50, pp.1751-8121, 2017. ,
Brownian Colloidal Particles: Ito, Stratonovich, or a Different Stochastic Interpretation, Phys. Rev. E, vol.84, p.62102, 2011. ,
Diffusion in Inhomogeneous Media, Journal of Physics and Chemistry of Solids, vol.49, pp.22-3697, 1988. ,
Macroscopic Equation of Motion in Inhomogeneous Media: A Microscopic Treatment, Pramana -J Phys, vol.45, pp.973-7111, 1995. ,
State-Dependent Diffusion: Thermodynamic Consistency and Its Path Integral Formulation, Phys. Rev. E -Stat. Nonlinear Soft Matter Phys, vol.76, p.17677426, 2007. ,
Itô versus Stratonovich White-Noise Limits for Systems with Inertia and Colored Multiplicative Noise, Phys. Rev. E, vol.70, p.15524600, 2004. ,
Itô versus Stratonovich, J. Stat. Phys, vol.24, p.15729613, 1981. ,
Drift Velocity in Non-Isothermal Inhomogeneous Systems, The Journal of Chemical Physics, vol.136, pp.1089-7690, 2012. ,
, Stochastic Processes in Physics and Chemistry 3rd, 1992.
Hänggi and All the Rest: The Thermodynamics of Interpretation, Chem. Phys, vol.375, p.3010104, 2010. ,
Langevin Dynamics in Inhomogeneous Media: Re-Examining the Itô-Stratonovich Dilemma, Phys. Rev. E, vol.89, pp.1539-3755, 2014. ,
On the Connection between Dissipative Particle Dynamics and the Itô-Stratonovich Dilemma, J. Chem. Phys, vol.144, pp.21-9606, 2016. ,
Isothermal Langevin Dynamics in Systems with Power-Law Spatially Dependent Friction, Phys. Rev. E, vol.94, 2016. ,
Influence of Noise on Force Measurements, Phys. Rev. Lett, vol.104, p.170602, 2010. ,
Force Measurement in the Presence of Brownian Noise: Equilibrium-Distribution Method versus Drift Method, Phys. Rev. E, vol.83, p.41113, 2011. ,
Théorie de la spéculation, Ann. Sci. École Norm. Sup, vol.17, pp.1873-2151, 1900. ,
Approaching Complexity by Stochastic Methods: From Biological Systems to Turbulence, Physics Reports, vol.506, p.3701573, 2011. ,
Estimation of Drift and Diffusion Functions from Time Series Data: A Maximum Likelihood Framework, Phys. Rev. E, vol.85, pp.1550-2376, 2012. ,
, The Random Character of Stock Market Prices, p.1067931365, 1970.
The Extreme Value Method for Estimating the Variance of the Rate of Return, J. Bus, vol.53, pp.61-65, 1980. ,
Stochastic Processes. 1. Asymptotic Behavior and Symmetries, Helvetica Phys. Acta, vol.51, 1978. ,
Stratonovich and Kinetic Forms of Stochastic Equations, Physica A: Statistical Mechanics and its Applications, vol.163, pp.378-4371, 1990. ,
Nonlinear Brownian motion, Uspekhi Fizicheskikh Nauk, vol.164, p.6652, 1994. ,
Effective Drifts in Dynamical Systems with Multiplicative Noise: A Review of Recent Progress, Rep. Prog. Phys, vol.79, p.344885, 2016. ,
Numerical Solution of Stochastic Differential Equations Corr, vol.636, 1999. ,
, Advances in Minimum Description Length: Theory and Applications, pp.81-98, 2005.
Stochastic Complexity and Modeling, Ann. Stat, vol.14, 1986. ,
, Bayes Factors. J. Am. Stat. Assoc, vol.90, pp.162-1459, 1995.
Bayesian Data Analysis 2nd, 2004. ,
, , 2018.
Diffusion in a Periodic Lorentz Gas, Phys. Rev. Lett, vol.50, pp.1959-1962, 1983. ,
Narrow Escape through a Funnel and Effective Diffusion on a Crowded Membrane, Phys. Rev. E, vol.84, p.21906, 2011. ,
, Coupled Mechanisms Produce Fickian, yet Non-Gaussian Diffusion in Heterogeneous Media, 2019.
The Slow Motion of a Sphere through a Viscous Fluid towards a Plane Surface, Chemical Engineering Science, vol.16, pp.9-2509, 1961. ,
Microscopic Simulation of Membrane Molecule Diffusion on Corralled Membrane Surfaces, Biophysical Journal, vol.94, p.63495, 2008. ,
Brownian Diffusion of Particles with Hydrodynamic Interaction, J. Fluid Mech, vol.74, pp.22-1120, 1976. ,
Why Molecules Move along a Temperature Gradient, Proceedings of the National Academy of Sciences, vol.103, pp.1091-6490, 2006. ,
Colloid Thermophoresis as a Non-Proportional Response, J. Non-Equilib. Thermodyn, vol.32, pp.221-229, 2007. ,
Anomalous Diffusion Models and Their Properties: Non-Stationarity, Non-Ergodicity, and Ageing at the Centenary of Single Particle Tracking, Phys. Chem. Chem. Phys, vol.16, pp.1463-9084, 2014. ,
HIV-1 Assembly, Release and Maturation, Nat. Rev. Microbiol, vol.13, p.26119571, 2015. ,
Single Molecule Localisation Microscopy Reveals How HIV-1 Gag Proteins Sense Membrane Virus Assembly Sites in Living Host CD4 T, Cells. Sci. Rep, vol.8, pp.2045-2322, 2018. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01930758
High-Density Mapping of Single-Molecule Trajectories with Photoactivated Localization Microscopy, Nat. Methods, vol.5, p.18193054, 2008. ,
Mapping Spatio-Temporal Dynamics of Single Biomolecules in Living Cells, 2019. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02408362
Diffusion in a Rough Potential, Proc. Natl. Acad. Sci, vol.85, 2006. ,
Bayes Factor Calculations Module for the TRamWAy Project, 2018. ,
Microscopic Crowding Simulation and Analysis Code, 2019. ,