N. Chenouard, I. Bloch, and J. C. Olivo-marin, Multiple hypothesis tracking for cluttered biological image sequences, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.35, issue.11, pp.2736-3750, 2013.
URL : https://hal.archives-ouvertes.fr/hal-02286646

F. De-chaumont, S. Dallongeville, N. Chenouard, N. Hervé, S. Pop et al., Icy: an open bioimage informatics platform for extended reproducible research, Nature methods, vol.9, issue.7, p.690, 2012.

L. S. Diamond, D. R. Harlow, and C. C. Cunnick, A new medium for the axenic cultivation of Entamoeba histolytica and other Entamoeba, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.72, issue.4, pp.431-432, 1978.

C. Ducroz, J. C. Olivo-marin, and A. Dufour, Characterization of cell shape and deformation in 3d using spherical harmonics, 9th IEEE International Symposium on Biomedical Imaging (ISBI), pp.848-851, 2012.

A. Dufour, V. Meas-yedid, A. Grassart, and J. C. Olivo-marin, Automated quantification of cell endocytosis using active contours and wavelets, 19th International Conference on Pattern Recognition, pp.1-4, 2008.

A. C. Dufour, J. C. Olivo-marin, and N. Guillén, Amoeboid movement in protozoan pathogens, Seminars in Cell & Developmental Biology, vol.46, pp.128-134, 2015.

M. Manich, Online data of "A protocol to quantify cellular morphodynamics: from cell labelling to automatic image analysis, 2020.

J. C. Olivo-marin, Extraction of spots in biological images using multiscale products, Pattern Recognition, vol.35, pp.127-130, 1989.

D. B. Petropolis, D. M. Faust, G. Deep-jhingan, and N. Guillen, A New Human 3D-Liver Model Unravels the Role of Galectins in Liver Infection by the Parasite Entamoeba histolytica, PLoS Pathogens, vol.10, issue.9, 2014.

V. Wiesmann, D. Franz, C. Held, C. Munzenmayer, R. Palmisano et al., Review of free software tools for image analysis of fluorescence cell micrographs, Journal of Microscopy, vol.257, pp.39-53, 2015.

C. Zimmer, E. Labruyere, V. Meas-yedid, N. Guillen, and J. C. Olivo-marin, Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing, IEEE Transactions on Medical Imaging, vol.21, issue.10, pp.1212-1221, 2002.