T. Akiyama and M. C. Gibson, Decapentaplegic and growth control in the developing Drosophila wing, Nature, vol.527, pp.375-378, 2015.

F. Alwes, C. Enjolras, and M. Averof, Live imaging reveals the progenitors and cell dynamics of limb regeneration, vol.5, p.19766, 2016.

F. Alwes, B. Hinchen, and C. G. Extavour, Patterns of cell lineage, movement, and migration from germ layer specification to gastrulation in the amphipod crustacean Parhyale hawaiensis, Developmental Biology, vol.359, pp.110-123, 2011.

F. Amat, B. Hö-ckendorf, Y. Wan, W. C. Lemon, K. Mcdole et al., Efficient processing and analysis of largescale light-sheet microscopy data, Nature Protocols, vol.10, pp.1679-1696, 2015.

F. Amat, W. Lemon, D. P. Mossing, K. Mcdole, Y. Wan et al., Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data, Nature Methods, vol.11, pp.951-958, 2014.

D. R. Angelini and T. C. Kaufman, Insect appendages and comparative ontogenetics, Developmental Biology, vol.286, pp.57-77, 2005.

L. A. Baena-ló-pez, A. Baonza, and A. García-bellido, The orientation of cell divisions determines the shape of Drosophila organs, Current Biology, vol.15, pp.1640-1644, 2005.

L. Barrio and M. Milá-n, Boundary Dpp promotes growth of medial and lateral regions of theDrosophilawing, vol.6, p.22013, 2017.

B. Boehm, H. Westerberg, G. Lesnicar-pucko, S. Raja, M. Rautschka et al., The role of spatially controlled cell proliferation in limb bud morphogenesis, PLoS Biology, vol.8, issue.1000420, 2010.

P. S. Bosch, R. Ziukaite, C. Alexandre, K. Basler, and J. P. Vincent, Dpp controls growth and patterning in Drosophila wing precursors through distinct modes of action, vol.6, p.22546, 2017.

W. J. Brook and S. M. Cohen, Antagonistic interactions between wingless and decapentaplegic responsible for dorsal-ventral pattern in the Drosophila Leg, Science, vol.273, pp.1373-1377, 1996.

W. E. Browne, A. L. Price, M. Gerberding, and N. H. Patel, Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis, Genesis, vol.42, pp.124-149, 2005.

M. E. Buckingham and S. M. Meilhac, Tracing cells for tracking cell lineage and clonal behavior, Developmental Cell, vol.21, pp.394-409, 2011.

R. C. Chaw and N. H. Patel, Independent migration of cell populations in the early gastrulation of the amphipod crustacean Parhyale hawaiensis, Developmental Biology, vol.371, pp.94-109, 2012.

R. K. Chhetri, F. Amat, Y. Wan, B. Hö-ckendorf, W. C. Lemon et al., Whole-animal functional and developmental imaging with isotropic spatial resolution, Nature Methods, vol.12, pp.1171-1178, 2015.

C. A. Combs and H. Shroff, Fluorescence microscopy: a concise guide to current imaging methods, Current Protocols in Neuroscience, vol.79, pp.1-25, 2017.

C. Dahmann, A. C. Oates, and M. Brand, Boundary formation and maintenance in tissue development, Nature Reviews Genetics, vol.12, pp.43-55, 2011.

W. G. Damen, Evolutionary conservation and divergence of the segmentation process in arthropods, Developmental Dynamics, vol.236, pp.1379-1391, 2007.

J. D. Dana, United States Exploring Expedition. 14 p, pp.689-1618, 1853.

S. J. Day and P. A. Lawrence, Measuring dimensions: the regulation of size and shape, Development, vol.127, pp.2977-2987, 2000.

W. Dohle, M. Gerberding, A. Hejnol, and G. Scholtz, Cell lineage, segment differentiation, and gene expression in crustaceans, 2004.

W. Dohle and G. Scholtz, Clonal analysis of the crustacean segment: the discordance between genealogical and segmental borders, Development, vol.104, pp.147-160, 1988.

Z. Du, A. Santella, F. He, M. Tiongson, and Z. Bao, De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis, Cell, vol.156, pp.359-372, 2014.

A. C. Dufour, A. H. Jonker, and J. C. Olivo-marin, Deciphering tissue morphodynamics using bioimage informatics, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.372, 2017.

N. A. Dye, M. Popovi?, S. Spannl, R. Etournay, D. Kainmü-ller et al., Cell dynamics underlying oriented growth of theDrosophilawing imaginal disc, Development, vol.144, pp.4406-4421, 2017.

D. A. Ede and J. T. Law, Computer simulation of vertebrate limb morphogenesis, Nature, vol.221, pp.244-248, 1969.

C. Estella, R. Voutev, and R. S. Mann, A dynamic network of morphogens and transcription factors patterns the fly leg, Current Topics in Developmental Biology, vol.98, pp.173-198, 2012.

E. Faure, T. Savy, B. Rizzi, C. Melani, O. Sta?ová et al., A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage, Nature Communications, vol.7, p.8674, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02086959

M. Fischer, I. Haase, S. Wiesner, and A. Mü-ller-taubenberger, Visualizing cytoskeleton dynamics in mammalian cells using a humanized variant of monomeric red fluorescent protein, FEBS Letters, vol.580, pp.2495-2502, 2006.

J. A. Freeman, L. B. Cheshire, and T. H. Macrae, Epithelial morphogenesis in developing Artemia: the role of cell replication, cell shape change, and the cytoskeleton, Developmental Biology, vol.152, pp.279-292, 1992.

A. Garcia-bellido, P. Ripoll, and G. Morata, Developmental compartmentalisation of the wing disk of Drosophila, Nature New Biology, vol.245, pp.251-253, 1973.

A. García-bellido, Genetic control of wing disc development in Drosophila, Ciba Foundation Symposium, pp.161-182, 1975.

M. Gerberding, W. E. Browne, and N. H. Patel, Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates, Development, vol.129, pp.5789-5801, 2002.

M. Gonzá-lez-gaitá-n, M. P. Capdevila, and A. García-bellido, Cell proliferation patterns in the wing imaginal disc of Drosophila, Mechanisms of Development, vol.46, pp.183-200, 1994.

R. L. Hannibal, A. L. Price, and N. H. Patel, The functional relationship between ectodermal and mesodermal segmentation in the crustacean, Parhyale hawaiensis, Developmental Biology, vol.361, pp.427-438, 2012.

S. Harmansa, F. Hamaratoglu, M. Affolter, and E. Caussinus, Dpp spreading is required for medial but not for lateral wing disc growth, Nature, vol.527, pp.317-322, 2015.

I. Heemskerk, T. Lecuit, and L. Legoff, Dynamic clonal analysis based on chronic in vivo imaging allows multiscale quantification of growth in the Drosophila wing disc, Development, vol.141, pp.2339-2348, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01134435

C. P. Heisenberg and Y. Bellaïche, Forces in tissue morphogenesis and patterning, Cell, vol.153, pp.948-962, 2013.

A. Hejnol and G. Scholtz, Clonal analysis of Distal-less and engrailed expression patterns during early morphogenesis of uniramous and biramous crustacean limbs, Development Genes and Evolution, vol.214, pp.473-485, 2004.

A. Hornbruch and L. Wolpert, Cell division in the early growth and morphogenesis of the chick limb, Nature, vol.226, pp.764-766, 1970.

J. Huisken and D. Y. Stainier, Selective plane illumination microscopy techniques in developmental biology, Development, vol.136, pp.1963-1975, 2009.

J. Huisken, J. Swoger, D. Bene, F. Wittbrodt, J. Stelzer et al., Optical sectioning deep inside live embryos by selective plane illumination microscopy, Science, vol.305, pp.1007-1009, 2004.

M. Ingaramo, A. G. York, E. Hoogendoorn, M. Postma, H. Shroff et al., Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths, ChemPhysChem, vol.15, pp.794-800, 2014.

R. Janssen, N. M. Feitosa, W. G. Damen, and N. M. Prpic, The T-box genes H15 and optomotor-blind in the spiders Cupiennius salei, Tegenaria atrica and Achaearanea tepidariorum and the dorsoventral axis of arthropod appendages, Evolution & Development, vol.10, pp.143-154, 2008.

D. Kao, A. G. Lai, E. Stamataki, S. Rosic, N. Konstantinides et al., The genome of the crustaceanParhyale hawaiensis,a model for animal development, regeneration, immunity and lignocellulose digestion, vol.5, p.20062, 2016.

P. J. Keller, A. D. Schmidt, J. Wittbrodt, and E. H. Stelzer, Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy, Science, vol.322, pp.1065-1069, 2008.

P. J. Keller, Imaging morphogenesis: technological advances and biological insights, Science, vol.340, p.1234168, 2013.

R. Keller, Physical biology returns to morphogenesis, Science, vol.338, pp.201-203, 2012.

K. Khairy and P. J. Keller, Reconstructing embryonic development, Genesis, vol.49, pp.488-513, 2011.

N. Konstantinides and M. Averof, A common cellular basis for muscle regeneration in arthropods and vertebrates, Science, vol.343, pp.788-791, 2014.

Z. Kontarakis and A. Pavlopoulos, Transgenesis in non-model organisms: the case of Parhyale, Methods in Molecular Biology, vol.1196, pp.145-181, 2014.

K. Kretzschmar and F. M. Watt, Lineage tracing, Cell, vol.148, pp.33-45, 2012.

U. Krzic, S. Gunther, T. E. Saunders, S. J. Streichan, and L. Hufnagel, Multiview light-sheet microscope for rapid in toto imaging, Nature Methods, vol.9, pp.730-733, 2012.

P. A. Lawrence and G. Struhl, Morphogens, compartments, and pattern: lessons from drosophila?, Cell, vol.85, pp.951-961, 1996.

T. Lecuit and L. Mahadevan, Morphogenesis one century after On Growth and Form. Development, vol.144, pp.4197-4198, 2017.

L. Legoff and T. Lecuit, Mechanical forces and growth in animal tissues, Cold Spring Harbor Perspectives in Biology, vol.8, p.19232, 2015.

L. Legoff, H. Rouault, and T. Lecuit, A global pattern of mechanical stress polarizes cell divisions and cell shape in the growing Drosophila wing disc, Development, vol.140, pp.4051-4059, 2013.

D. M. Liubicich, J. M. Serano, A. Pavlopoulos, Z. Kontarakis, M. E. Protas et al., Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology, PNAS, vol.106, pp.13892-13896, 2009.

R. S. Mann and S. B. Carroll, Molecular mechanisms of selector gene function and evolution, Current Opinion in Genetics & Development, vol.12, pp.592-600, 2002.

Y. Mao, A. L. Tournier, A. Hoppe, L. Kester, B. J. Thompson et al., Differential proliferation rates generate patterns of mechanical tension that orient tissue growth, The EMBO Journal, vol.32, pp.2790-2803, 2013.

A. Martin, J. M. Serano, J. E. Bruce, H. S. Wang, J. Ray et al., CRISPR/Cas9 Mutagenesis reveals versatile roles of hox genes in crustacean limb specification and evolution, Current Biology, vol.26, pp.14-26, 2016.

S. Matsuda and M. Affolter, Dpp from the anterior stripe of cells is crucial for the growth of theDrosophilawing disc, vol.6, p.22319, 2017.

H. Meinhardt, Cell determination boundaries as organizing regions for secondary embryonic fields, Developmental Biology, vol.96, pp.375-385, 1983.

M. Milá-n and S. M. Cohen, Subdividing cell populations in the developing limbs of Drosophila: do wing veins and leg segments define units of growth control?, Developmental Biology, vol.217, pp.1-9, 2000.

Y. Morishita and Y. Iwasa, Growth based morphogenesis of vertebrate limb bud, Bulletin of Mathematical Biology, vol.70, pp.1957-1978, 2008.

N. H. Patel, T. B. Kornberg, and C. S. Goodman, Expression of engrailed during segmentation in grasshopper and crayfish, Trends in Genetics, vol.107, pp.392-212, 1989.

A. Pavlopoulos and M. Averof, Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis, PNAS, vol.102, pp.7888-7893, 2005.

A. Pavlopoulos, A. J. Berghammer, M. Averof, and M. Klingler, Efficient transformation of the beetle Tribolium castaneum using the Minos transposable element: quantitative and qualitative analysis of genomic integration events, Genetics, vol.167, pp.737-746, 2004.

A. Pavlopoulos, Z. Kontarakis, D. M. Liubicich, J. M. Serano, M. Akam et al., Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean, PNAS, vol.106, pp.13897-13902, 2009.

T. Pietzsch, S. Saalfeld, S. Preibisch, and P. Tomancak, BigDataViewer: visualization and processing for large image data sets, Nature Methods, vol.12, pp.481-483, 2015.

S. Preibisch, F. Amat, E. Stamataki, M. Sarov, R. H. Singer et al., Efficient bayesian-based multiview deconvolution, Nature Methods, vol.11, pp.645-648, 2014.

S. Preibisch, S. Saalfeld, J. Schindelin, and P. Tomancak, Software for bead-based registration of selective plane illumination microscopy data, Nature Methods, vol.7, pp.418-419, 2010.

N. M. Prpic and M. J. Telford, Expression of homothorax and extradenticle mRNA in the legs of the crustacean Parhyale hawaiensis: evidence for a reversal of gene expression regulation in the pancrustacean lineage, Development Genes and Evolution, vol.218, pp.333-339, 2008.

E. J. Rehm, R. L. Hannibal, R. C. Chaw, M. A. Vargas-vila, and N. H. Patel, In situ hybridization of labeled RNA probes to fixed Parhyale hawaiensis embryos, Cold Spring Harbor Protocols, 2009.

J. Resino, P. Salama-cohen, and A. García-bellido, Determining the role of patterned cell proliferation in the shape and size of the Drosophila wing, PNAS, vol.99, pp.7502-7507, 2002.

S. Restrepo, J. J. Zartman, and K. Basler, Coordination of patterning and growth by the morphogen DPP, Current Biology, vol.24, pp.245-255, 2014.

D. Rogulja and K. D. Irvine, Regulation of cell proliferation by a morphogen gradient, Cell, vol.123, pp.449-461, 2005.

J. L. Rubio-guivernau, V. Gurchenkov, M. A. Luengo-oroz, L. Duloquin, P. Bourgine et al., Wavelet-based image fusion in multi-view three-dimensional microscopy, Bioinformatics, vol.28, pp.238-245, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00683643

M. Schiegg, P. Hanslovsky, C. Haubold, U. Koethe, L. Hufnagel et al., Graphical model for joint segmentation and tracking of multiple dividing cells, Bioinformatics, vol.31, pp.948-956, 2015.

J. Schindelin, I. Arganda-carreras, E. Frise, V. Kaynig, M. Longair et al., Fiji: an open-source platform for biological-image analysis, Nature Methods, vol.9, pp.676-682, 2012.

B. Schmid, G. Shah, N. Scherf, M. Weber, K. Thierbach et al., Highspeed panoramic light-sheet microscopy reveals global endodermal cell dynamics, Nature Communications, vol.4, p.2207, 2013.

C. Schmied, E. Stamataki, and P. Tomancak, Open-source solutions for SPIMage processing, Methods in Cell Biology, vol.123, pp.505-529, 2014.

C. Schmied, P. Steinbach, T. Pietzsch, S. Preibisch, and P. Tomancak, An automated workflow for parallel processing of large multiview SPIM recordings, Bioinformatics, vol.32, pp.1112-1114, 2016.

R. Schnabel, H. Hutter, D. Moerman, and H. Schnabel, Assessing normal embryogenesis in Caenorhabditis elegans using a 4D microscope: variability of development and regional specification, Developmental Biology, vol.184, pp.234-265, 1997.

G. Scholtz, N. H. Patel, and W. Dohle, Serially homologous engrailed stripes are generated via different cell lineages in the germ band of amphipod crustaceans (Malacostraca, Peracarida), The International Journal of Developmental Biology, vol.38, pp.471-478, 1994.

G. Scholtz, The formation, differentiation and segmentation of the post-naupliar germ band of the amphipod gammarus pulex L. (Crustacea, Malacostraca, Peracarida), Proceedings of the Royal Society B: Biological Sciences, vol.239, pp.163-211, 1990.

R. L. Searls and M. Y. Janners, The initiation of limb bud outgrowth in the embryonic chick, Developmental Biology, vol.24, pp.198-213, 1971.

B. Spanjaard and J. P. Junker, Methods for lineage tracing on the organism-wide level, Current Opinion in Cell Biology, vol.49, pp.16-21, 2017.

E. Stamataki and A. Pavlopoulos, Non-insect crustacean models in developmental genetics including an encomium to Parhyale hawaiensis, Current Opinion in Genetics & Development, vol.39, pp.149-156, 2016.

A. Stamatakis, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, pp.1312-1313, 2014.

J. Stegmaier, F. Amat, W. C. Lemon, K. Mcdole, Y. Wan et al., Real-Time threedimensional cell segmentation in large-scale microscopy data of developing embryos, Developmental Cell, vol.36, pp.225-240, 2016.

E. Steiner, Establishment of compartments in the developing leg imaginal discs of Drosophila melanogaster, Wilhelm Roux Arch. Developmental Biology, vol.180, pp.9-30, 1976.

K. Strassburger, F. K. Lorbeer, M. Lutz, F. Graf, M. Boutros et al., Oxygenation and adenosine deaminase support growth and proliferation of ex vivo cultured Drosophila wing imaginal discs, Development, vol.144, pp.2529-2538, 2017.

J. E. Sulston, E. Schierenberg, J. G. White, and J. N. Thomson, The embryonic cell lineage of the nematode Caenorhabditis elegans, Developmental Biology, vol.100, pp.90201-90205, 1983.

P. C. Svendsen, J. R. Ryu, and W. J. Brook, The expression of the T-box selector gene midline in the leg imaginal disc is controlled by both transcriptional regulation and cell lineage, Biology Open, vol.4, pp.1707-1714, 2015.

J. Swoger, P. Verveer, K. Greger, J. Huisken, and E. H. Stelzer, Multi-view image fusion improves resolution in three-dimensional microscopy, Optics Express, vol.15, pp.8029-8042, 2007.

J. Y. Tinevez, N. Perry, J. Schindelin, G. M. Hoopes, G. D. Reynolds et al., TrackMate: An open and extensible platform for single-particle tracking, Methods, vol.115, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01799353

J. Y. Tinevez, T. Pietzsch, C. Rueden, K. Khairy, F. Amat et al., Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy, MaMuT. Github, vol.9, pp.755-763, 2012.

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, Deep and fast live imaging with two-photon scanned light-sheet microscopy, Nature Methods, vol.8, pp.757-760, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00803780

C. K. Tsao, H. Y. Ku, Y. M. Lee, Y. F. Huang, and Y. H. Sun, Long term ex vivo culture and live imaging of drosophila larval imaginal discs, PLoS One, vol.11, p.163744, 2016.

V. Ulman, M. Ma?ka, K. Magnusson, O. Ronneberger, C. Haubold et al., An objective comparison of cell-tracking algorithms, Nature Methods, vol.14, pp.1141-1152, 2017.

M. Weber, M. Mickoleit, and J. Huisken, Light sheet microscopy, Methods in Cell Biology, vol.123, pp.193-215, 2014.

K. Weigmann and S. M. Cohen, Lineage-tracing cells born in different domains along the PD axis of the developing Drosophila leg, Development, vol.126, pp.3823-3830, 1999.

C. Wolff and M. Gerberding, Crustacea": Comparative Aspects of Early Development, 2015.

I. Ecdysozoa and . Crustacea,

C. Wolff and G. Scholtz, Cell lineage, axis formation, and the origin of germ layers in the amphipod crustacean Orchestia cavimana, Developmental Biology, vol.250, pp.44-58, 2002.

C. Wolff and G. Scholtz, The clonal composition of biramous and uniramous arthropod limbs, Proceedings of the Royal Society B: Biological Sciences, vol.275, pp.1023-1028, 2008.

M. I. Worley, L. Setiawan, and I. K. Hariharan, TIE-DYE: a combinatorial marking system to visualize and genetically manipulate clones during development in Drosophila melanogaster, Development, vol.140, pp.3275-3284, 2013.

Y. Wu, P. Chandris, P. W. Winter, E. Y. Kim, V. Jaumouillé et al., Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy, Optica, vol.3, pp.897-910, 2016.

Y. Wu, P. Wawrzusin, J. Senseney, R. S. Fischer, R. Christensen et al., Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy, Nature Biotechnology, vol.31, pp.1032-1038, 2013.

L. A. Wyngaarden, K. M. Vogeli, B. G. Ciruna, M. Wells, A. K. Hadjantonakis et al., Oriented cell motility and division underlie early limb bud morphogenesis, Development, vol.137, pp.2551-2558, 2010.

J. Zartman, S. Restrepo, and K. Basler, A high-throughput template for optimizing Drosophila organ culture with response-surface methods, Development, vol.140, pp.667-674, 2013.