P. V. Afonine, New Tools for the Analysis and Validation of Cryo-EM Maps and Atomic Models, Acta Crystallographica Section D: Structural Biology, vol.74, pp.814-854, 2018.
URL : https://hal.archives-ouvertes.fr/inserm-02409756

D. P. Baquero, New Virus Isolates from Italian Hydrothermal Environments Underscore the Biogeographic Pattern in Archaeal Virus Communities, The ISME Journal, 2020.
URL : https://hal.archives-ouvertes.fr/pasteur-02557115

F. Dimaio, A Virus That Infects a Hyperthermophile Encapsidates A-Form DNA, Science, vol.348, pp.914-921, 2015.
URL : https://hal.archives-ouvertes.fr/pasteur-01977386

E. H. Egelman, A Robust Algorithm for the Reconstruction of Helical Filaments Using Single-Particle Methods, Ultramicroscopy, vol.85, pp.225-259, 2000.

P. Emsley and K. Cowtan, Coot: Model-Building Tools for Molecular Graphics, Acta Crystallographica Section D: Structural Biology, vol.60, pp.2126-2158, 2004.

R. Hartman, Survey of High-Resolution Archaeal Virus Structures', Current Opinion in Virology, vol.36, pp.74-83, 2019.

J. Iranzo, Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements, Journal of Virology, vol.90, pp.11043-55, 2016.
URL : https://hal.archives-ouvertes.fr/pasteur-01375582

P. Kasson, Model for a Novel Membrane Envelope in a Filamentous Hyperthermophilic Virus, p.26268, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01977357

M. Krupovic and E. V. Koonin, Multiple Origins of Viral Capsid Proteins from Cellular Ancestors, Proceedings of the National Academy of Sciences of the United States of America, vol.114, pp.2401-2410, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01977364

X. Li, Electron Counting and Beam-Induced Motion Correction Enable near-Atomic-Resolution Single-Particle cryo-EM', Nature Methods, vol.10, pp.584-90, 2013.

Y. Liu, Structural Conservation in a Membrane-Enveloped Filamentous Virus Infecting a Hyperthermophilic Acidophile, Nature Communications, vol.9, p.3360, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-01977327

J. A. Mindell and N. Grigorieff, Accurate Determination of Local Defocus and Specimen Tilt in Electron Microscopy, Journal of Structural Biology, vol.142, pp.334-381, 2003.

E. F. Pettersen, UCSF Chimera-A Visualization System for Exploratory Research and Analysis, Journal of Computational Chemistry, vol.25, pp.1605-1617, 2004.

D. Prangishvili and M. Krupovic, A New Proposed Taxon for Double-Stranded DNA Viruses, the Order "Ligamenvirales, Nature Reviews Microbiology, vol.157, pp.724-763, 2012.
URL : https://hal.archives-ouvertes.fr/pasteur-01977408

D. Ptchelkine, Unique Architecture of Thermophilic Archaeal Virus APBV1 and Its Genome Packaging, Nature Communications, vol.8, p.1436, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01977352

E. R. Quemin, Sulfolobus Spindle-Shaped Virus 1, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01430608

, Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids, Journal of Virology, vol.89, pp.11681-91

E. I. Rensen, A Virus of Hyperthermophilic Archaea with a Unique Architecture among DNA Viruses, Proceedings of the National Academy of Sciences of the Unites States of America, vol.113, pp.2478-83, 2016.
URL : https://hal.archives-ouvertes.fr/pasteur-01375493

T. R. Shaikh, SPIDER Image Processing for Single-Particle Reconstruction of Biological Macromolecules from Electron Micrographs, Nature Protocols, vol.3, pp.1941-74, 2008.

G. Tang, EMAN2: An Extensible Image Processing Suite for Electron Microscopy, Journal of Structural Biology, vol.157, pp.38-46, 2007.

F. Wang, A Packing for A-Form DNA in an Icosahedral Virus, Proceedings of the National Academy of Sciences of the Unites States of America, vol.116, pp.22591-22598, 2019.
URL : https://hal.archives-ouvertes.fr/pasteur-02559906

R. Y. Wang, De Novo Protein Structure Determination from Near-Atomic-Resolution Cryo-EM Maps', Nature Methods, vol.12, pp.335-343, 2015.

C. J. Williams, MolProbity: More and Better Reference Data for Improved All-Atom Structure Validation, Protein Science, vol.27, pp.293-315, 2018.

Y. Ye and A. Godzik, Flexible Structure Alignment by Chaining Aligned Fragment Pairs Allowing Twists, Bioinformatics, vol.19, pp.246-55, 2003.

J. Zivanov, New Tools for Automated High-Resolution Cryo-EM Structure Determination in RELION-3, p.42166, 2018.