S. S. Jaswal, Biological insights from hydrogen exchange mass spectrometry, Biochimica et biophysica acta, vol.1834, issue.6, pp.1188-1201, 2013.

L. Konermann, J. Pan, and Y. H. Liu, Hydrogen exchange mass spectrometry for studying protein structure and dynamics, Chemical Society reviews, vol.40, issue.3, pp.1224-1234, 2011.

I. Oganesyan, C. Lento, and D. J. Wilson, Contemporary hydrogen deuterium exchange mass spectrometry, Methods, vol.144, pp.27-42, 2018.

Y. Tsutsui and P. L. Wintrode, Hydrogen/deuterium exchange-mass spectrometry: a powerful tool for probing protein structure, dynamics and interactions, Current medicinal chemistry, vol.14, issue.22, pp.2344-2358, 2007.

T. E. Wales and J. R. Engen, Hydrogen exchange mass spectrometry for the analysis of protein dynamics, Mass spectrometry reviews, vol.25, issue.1, pp.158-170, 2006.

S. Brier and J. R. Engen, Hydrogen Exchange Mass Spectrometry: Principles and Capabilities. In: Chance M (ed) Mass Spectrometry Analysis for Protein-Protein Interactions and Dynamics, pp.11-43, 2008.

S. Brier, L. Fagnocchi, D. Donnarumma, M. Scarselli, R. Rappuoli et al., Structural insight into the mechanism of DNA-binding attenuation of the Neisserial adhesin repressor NadR by the small natural ligand 4-hydroxyphenylacetic acid, Biochemistry, vol.51, issue.34, pp.6738-6752, 2012.

A. Faleri, L. Santini, S. Brier, W. Pansegrau, L. Surdo et al., Two cross-reactive monoclonal antibodies recognize overlapping epitopes on Neisseria meningitidis factor H binding protein but have different functional properties, FASEB journal : official publication of the Federation of American Societies for Experimental Biology, vol.28, issue.4, pp.1644-1653, 2014.

F. Georgescauld, K. Popova, A. J. Gupta, A. Bracher, J. R. Engen et al., , 2014.

, GroEL/ES chaperonin modulates the mechanism and accelerates the rate of TIM-barrel domain folding, Cell, vol.157, issue.4, pp.922-934

G. F. Pirrone, L. A. Emert-sedlak, T. E. Wales, T. E. Smithgall, M. S. Kent et al., Membrane-Associated Conformation of HIV-1 Nef Investigated with Hydrogen Exchange Mass Spectrometry at a Langmuir Monolayer, Analytical chemistry, vol.87, issue.14, pp.7030-7035, 2015.

M. B. Trelle, D. M. Dupont, J. B. Madsen, P. A. Andreasen, and T. J. Jorgensen, Dissecting the effect of RNA aptamer binding on the dynamics of plasminogen activator inhibitor 1 using hydrogen/deuterium exchange mass spectrometry, ACS chemical biology, vol.9, issue.1, pp.174-182, 2014.

J. C. Canul-tec, R. Assal, E. Cirri, P. Legrand, S. Brier et al., Structure and allosteric inhibition of excitatory amino acid transporter 1, Nature, vol.544, issue.7651, pp.446-451, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01655604

K. Y. Chung, S. G. Rasmussen, T. Liu, S. Li, B. T. Devree et al., Conformational changes in the G protein Gs induced by the beta2 adrenergic receptor, Nature, vol.477, issue.7366, pp.611-615, 2011.

E. Malito, A. Faleri, L. Surdo, P. Veggi, D. Maruggi et al., Defining a protective epitope on factor H binding protein, a key meningococcal virulence factor and vaccine antigen, Proceedings of the National Academy of Sciences of the United States of America, vol.110, issue.9, pp.3304-3309, 2013.

D. P. O'brien, S. Brier, D. Ladant, D. Durand, A. Chenal et al., A powerful combination. The case of the calcium-binding domain of a bacterial toxin, Biotechnology and applied biochemistry, vol.65, issue.1, pp.62-68, 2018.

D. P. O'brien, D. Durand, A. Voegele, V. Hourdel, M. Davi et al., Calmodulin fishing with a structurally disordered bait triggers CyaA catalysis, PLoS biology, vol.15, issue.12, p.2004486, 2017.

P. Cavaliere, S. Brier, P. Filipenko, C. Sizun, B. Raynal et al., The stress sigma factor of RNA polymerase RpoS/sigma(S) is a solvent-exposed open molecule in solution, The Biochemical journal, vol.475, issue.1, pp.341-354, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-01685123

K. Hamdi, E. Salladini, D. P. O'brien, S. Brier, A. Chenal et al., Structural disorder and induced folding within two cereal, ABA stress and ripening (ASR) proteins, Scientific reports, vol.7, issue.1, p.15544, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01802824

T. E. Wales, K. E. Fadgen, G. C. Gerhardt, and J. R. Engen, High-speed and high-resolution UPLC separation at zero degrees Celsius, Analytical chemistry, vol.80, issue.17, pp.6815-6820, 2008.

V. Hourdel, S. Volant, D. P. O'brien, A. Chenal, J. Chamot-rooke et al., MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets, Bioinformatics, vol.32, issue.22, pp.3413-3419, 2016.
URL : https://hal.archives-ouvertes.fr/pasteur-01377055

D. E. Miller, C. B. Prasannan, M. T. Villar, A. W. Fenton, and A. Artigues, HDXFinder: automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry, Journal of the American Society for Mass Spectrometry, vol.23, issue.2, pp.425-429, 2012.

B. D. Pascal, M. J. Chalmers, S. A. Busby, C. C. Mader, M. R. Southern et al., The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data, BMC bioinformatics, vol.8, p.156, 2007.

B. D. Pascal, S. Willis, J. L. Lauer, R. R. Landgraf, G. M. West et al., HDX workbench: software for the analysis of H/D exchange MS data, Journal of the American Society for Mass Spectrometry, vol.23, issue.9, pp.1512-1521, 2012.

X. X. Lim, A. Chandramohan, X. Y. Lim, N. Bag, K. K. Sharma et al., Conformational changes in intact dengue virus reveal serotype-specific expansion, Nature communications, vol.8, p.14339, 2017.

M. Giladi, L. Almagor, L. Van-dijk, R. Hiller, P. Man et al., Asymmetric Preorganization of Inverted Pair Residues in the Sodium-Calcium Exchanger, Scientific reports, vol.6, p.20753, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01299020

M. Giladi, L. Van-dijk, B. Refaeli, L. Almagor, R. Hiller et al., Dynamic distinctions in the Na(+)/Ca(2+) exchanger adopting the inward-and outward-facing conformational states, The Journal of biological chemistry, vol.292, issue.29, pp.12311-12323, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01647025

S. Mehmood, C. Domene, E. Forest, and J. M. Jault, Dynamics of a bacterial multidrug ABC transporter in the inward-and outward-facing conformations, Proceedings of the National Academy of Sciences of the United States of America, vol.109, pp.10832-10836, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01004601

G. M. West, E. Y. Chien, V. Katritch, J. Gatchalian, M. J. Chalmers et al., Ligand-dependent perturbation of the conformational ensemble for the GPCR beta2 adrenergic receptor revealed by HDX, Structure, vol.19, issue.10, pp.1424-1432, 2011.

L. Yang, D. Yang, C. De-graaf, A. Moeller, G. M. West et al., Conformational states of the full-length glucagon receptor, Nature communications, vol.6, p.7859, 2015.

X. Zhang, E. Y. Chien, M. J. Chalmers, B. D. Pascal, J. Gatchalian et al., Dynamics of the beta2-adrenergic G-protein coupled receptor revealed by hydrogen-deuterium exchange, Analytical chemistry, vol.82, issue.3, pp.1100-1108, 2010.

B. S. Antharavally, K. A. Mallia, M. M. Rosenblatt, A. M. Salunkhe, J. C. Rogers et al., Efficient removal of detergents from proteins and peptides in a spin column format, Analytical biochemistry, vol.416, issue.1, pp.39-44, 2011.

J. R. Wisniewski, A. Zougman, N. Nagaraj, and M. Mann, Universal sample preparation method for proteome analysis, Nature methods, vol.6, issue.5, pp.359-362, 2009.

E. Cirri, S. Brier, R. Assal, J. C. Canul-tec, J. Chamot-rooke et al., Consensus designs and thermal stability determinants of a human glutamate transporter, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-01916344

Y. Hamuro and S. J. Coales, Optimization of Feasibility Stage for Hydrogen/Deuterium Exchange Mass Spectrometry, Journal of the American Society for Mass Spectrometry, vol.29, issue.3, pp.623-629, 2018.

M. Guttman, T. E. Wales, D. Whittington, J. R. Engen, J. M. Brown et al., Tuning a High Transmission Ion Guide to Prevent Gas-Phase Proton Exchange During H/D Exchange MS Analysis, Journal of the American Society for Mass Spectrometry, vol.27, issue.4, pp.662-668, 2016.

S. Adhikary, D. J. Deredge, A. Nagarajan, L. R. Forrest, P. L. Wintrode et al., Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer, Proceedings of the National Academy of Sciences of the United States of America, vol.114, issue.10, pp.1786-1795, 2017.

C. M. Hebling, C. R. Morgan, D. W. Stafford, J. W. Jorgenson, K. D. Rand et al., Conformational analysis of membrane proteins in phospholipid bilayer nanodiscs by hydrogen exchange mass spectrometry, Analytical chemistry, vol.82, issue.13, pp.5415-5419, 2010.

C. R. Morgan, C. M. Hebling, K. D. Rand, D. W. Stafford, J. W. Jorgenson et al., Conformational transitions in the membrane scaffold protein of phospholipid bilayer nanodiscs, Molecular & cellular proteomics : MCP, vol.10, issue.9, pp.111-010876, 2011.

C. H. Parker, C. R. Morgan, K. D. Rand, J. R. Engen, J. W. Jorgenson et al., A conformational investigation of propeptide binding to the integral membrane protein gamma-glutamyl carboxylase using nanodisc hydrogen exchange mass spectrometry, Biochemistry, vol.53, issue.9, pp.1511-1520, 2014.

M. Redhair, A. F. Clouser, and W. M. Atkins, Hydrogen-Deuterium Exchange Mass Spectrometry of Membrane Proteins in Lipid Nanodiscs, Chemistry and physics of lipids, 2019.

S. Vahidi, Y. Bi, S. D. Dunn, and L. Konermann, Load-dependent destabilization of the gammarotor shaft in FOF1 ATP synthase revealed by hydrogen/deuterium-exchange mass spectrometry, Proceedings of the National Academy of Sciences of the United States of America, vol.113, issue.9, pp.2412-2417, 2016.

D. Donnarumma, C. Maestri, P. I. Giammarinaro, L. Capriotti, E. Bartolini et al., Native State Organization of Outer Membrane Porins Unraveled by HDx-MS, Journal of proteome research, vol.17, issue.5, pp.1794-1800, 2018.

L. Cravello, D. Lascoux, and E. Forest, Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins. Rapid communications in mass spectrometry, RCM, vol.17, issue.21, pp.2387-2393, 2003.

S. Mysling, R. Salbo, M. Ploug, and T. J. Jorgensen, Electrochemical reduction of disulfidecontaining proteins for hydrogen/deuterium exchange monitored by mass spectrometry, Analytical chemistry, vol.86, issue.1, pp.340-345, 2014.

E. Trabjerg, R. U. Jakobsen, S. Mysling, S. Christensen, T. J. Jorgensen et al., Conformational analysis of large and highly disulfide-stabilized proteins by integrating online electrochemical reduction into an optimized H/D exchange mass spectrometry workflow, Analytical chemistry, vol.87, issue.17, pp.8880-8888, 2015.

E. Forest and P. Man, Conformational Dynamics and Interactions of Membrane Proteins by Hydrogen/Deuterium Mass Spectrometry, Methods in molecular biology, vol.1432, pp.269-279, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01431533

R. Majumdar, P. Manikwar, J. M. Hickey, J. Arora, C. R. Middaugh et al., Minimizing carry-over in an online pepsin digestion system used for the H/D exchange mass spectrometric analysis of an IgG1 monoclonal antibody, Journal of the American Society for Mass Spectrometry, vol.23, issue.12, pp.2140-2148, 2012.

J. Claesen and T. Burzykowski, Computational methods and challenges in hydrogen/deuterium exchange mass spectrometry, Mass spectrometry reviews, vol.36, issue.5, pp.649-667, 2017.

S. Brier, L. Mignon, M. Jain, K. Lebrun, C. Peurois et al., Characterization of epitope specificities of reference antibodies used for the quantification of the birch pollen allergen Bet v 1, Allergy, vol.73, issue.5, pp.1032-1040, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02095085