Bacterial biofilms: from the natural 591 environment to infectious diseases, Nature Reviews Microbiology, vol.2, pp.95-108, 2004. ,
Biofilm-related infections: bridging the gap 593 between clinical management and fundamental aspects of recalcitrance toward 594 antibiotics, Microbiology and molecular biology reviews: MMBR, vol.78, pp.510-543, 2014. ,
Identification and quantification of 596 microbial populations in activated sludge and anaerobic digestion processes, Environ 597 Technol, vol.36, pp.45-53, 2015. ,
, , p.600
, , p.601
, , p.602
,
,
,
Enterotypes of the human gut microbiome, Nature, vol.473, pp.174-180, 2011. ,
The first 1000 cultured species of the 607 human gastrointestinal microbiota, FEMS Microbiology Reviews, vol.38, pp.996-1047, 2014. ,
Getting a grip on things: how do 609 communities of bacterial symbionts become established in our intestine?, Nature, vol.610, 2004. ,
, Immunology, vol.5, pp.569-573
, , 2004.
, Microbial biofilms in the gut: visualization by electron microscopy and by acridine 613 orange staining, Ultrastructural Pathology, vol.28, pp.23-27
Spatial organization of 615 bacterial flora in normal and inflamed intestine: a fluorescence in situ hybridization 616 study in mice, World Journal of Gastroenterology, vol.11, pp.1131-1140, 2005. ,
Microbial biofilms in the human gastrointestinal tract, Journal of Applied Microbiology, vol.618, pp.1187-1196, 2007. ,
, , p.620
, , p.621
, , p.622
, , p.623
Microbiota organization is a distinct feature of proximal colorectal 624 cancers, Proc Natl Acad Sci U S A, vol.111, pp.18321-18327, 2014. ,
, , p.626
, , p.627
Metabolism links 628 bacterial biofilms and colon carcinogenesis, Cell Metab, vol.21, pp.891-898, 2015. ,
, , p.630
A genomic view of the human-Bacteroides thetaiotaomicron 631 symbiosis, Science, vol.299, pp.2074-2076, 2003. ,
Molecular 633 analysis of commensal host-microbial relationships in the intestine, Science, p.634, 2001. ,
, , vol.291, pp.881-884
Bacteroides 638 thetaiotaomicron in the gut: molecular aspects of their interaction, Digestive and Liver, vol.4, p.23, 2003. ,
, Disease: Official Journal of the Italian Society of Gastroenterology and the Italian 640 Association for the Study of the Liver, vol.39, pp.707-712
Complex glycan catabolism 642 by the human gut microbiota: the Bacteroidetes Sus-like paradigm, The Journal of 643 Biological Chemistry, vol.284, pp.24673-24677, 2009. ,
Detection of Bacteroides fragilis, p.645, 1988. ,
, Bacteroides thetaiotaomicron, and Bacteroides ovatus in clinical specimens by 646 immunofluorescence with a monoclonal antibody to B. fragilis lipopolysaccharide, Journal of Clinical Microbiology, vol.647, pp.448-452
First isolation of Bacteroides thetaiotaomicron from a patient with a 650 cholesteatoma and experiencing meningitis, Journal of Clinical Microbiology, vol.649, pp.1467-1469, 2005. ,
Regulated expression of polysaccharide utilization and capsular 654 biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during 655 growth in chemostats, Biotechnology and Bioengineering, vol.111, pp.165-173, 2014. ,
, , p.657
, , p.658
A Distinct Type of Pilus from the Human 659, 2016. ,
, Cell, vol.165, pp.690-703
, , 2009.
, Surface components of Porphyromonas gingivalis, Journal of Periodontal Research, vol.662, pp.1-12
, , 2012.
, Porphyromonas gingivalis FimA Fimbriae: Fimbrial Assembly by fimA Alone in the
, fim Gene Cluster and Differential Antigenicity among fimA Genotypes, PLoS ONE, vol.7, p.23
,
Diffusely adherent Escherichia 670 coli strains isolated from children and adults constitute two different populations, Environmental Microbiology, vol.18, p.22, 2013. ,
,
Genotypic diversity and virulent factors of Staphylococcus epidermidis 674 isolated from human breast milk, Microbiol Res, vol.168, pp.77-83, 2013. ,
Virulence 676 factors and biofilm production by isolates of Bacteroides fragilis recovered from dog 677 intestinal tracts, Brazilian Journal of Microbiology, vol.45, pp.647-650, 2014. ,
, , p.679
CD4+ T cells mediate abscess formation in intra-abdominal sepsis by 680 an IL-17-dependent mechanism, Journal of Immunology, vol.681, pp.1958-1963, 1950. ,
Cellular mechanism of 683 intraabdominal abscess formation by Bacteroides fragilis, Journal of Immunology, vol.684, pp.5000-5006, 1950. ,
Pathogenicity of the Bacteroides fragilis group, Annals of Clinical and 686 Laboratory Science, vol.19, pp.360-376, 1989. ,
Integrin-mediated host cell 688 invasion by type 1-piliated uropathogenic Escherichia coli, PLoS pathogens, vol.3, p.31, 2007. ,
Broad-spectrum biofilm inhibition by a secreted bacterial polysaccharide, Proc, vol.690, 2006. ,
, Natl Acad Sci U S A, vol.103, pp.12558-63
The human commensal Bacteroides 693 fragilis binds intestinal mucin, Anaerobe, vol.17, pp.137-141, 2011. ,
, , p.695
, Mfa4, an Accessory Protein of Mfa1 Fimbriae, p.696, 2015.
, Modulates Fimbrial Biogenesis, Cell Auto-Aggregation, and Biofilm Formation in 697
, Porphyromonas gingivalis. PloS One, vol.10, p.139454
, , p.699, 2011.
, Porphyromonas gingivalis FimA genotypes, Molecular Oral Microbiology, vol.26, pp.388-700
Structural and functional 702 characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the 703 periodontal pathogen Porphyromonas gingivalis, Sci Rep, vol.8, p.1793, 2018. ,
, , p.705
Anchoring and 706 length regulation of Porphyromonas gingivalis Mfa1 fimbriae by the downstream gene 707 product Mfa2, Microbiology, vol.155, pp.3333-3347, 2009. ,
FimB 709 regulates FimA fimbriation in Porphyromonas gingivalis, Journal of Dental Research, vol.710, pp.903-908, 2010. ,
Maturation of 712 the Mfa1 Fimbriae in the Oral Pathogen Porphyromonas gingivalis, Front Cell Infect, p.713, 2018. ,
, Laboratory maintenance and cultivation of bacteroides 715 species, Unit-13C.1, vol.13, p.40, 2008.
Natural conjugative plasmids induce bacterial biofilm development, Nature, vol.717, pp.442-445, 2001. ,
, , p.719
Identifying genetic determinants needed to establish a human gut 720 symbiont in its habitat, Cell Host & Microbe, vol.6, pp.279-289, 2009. ,
Starch catabolism by a 722 prominent human gut symbiont is directed by the recognition of amylose helices, 2008. ,
, Structure, vol.16, pp.1105-1115, 1993.
, , p.725, 2000.
, Which Carries a Functional Lincomycin 726, Bacteroides Mobilizable Transposon, vol.2
, Resistance Gene. Journal of Bacteriology, vol.182, pp.3559-3571
Fast gapped-read alignment with Bowtie 2, Nat 728 Methods, vol.9, pp.357-366, 2012. ,
CDD: NCBI's 732 conserved domain database, Nucleic Acids Res, vol.43, pp.222-228, 2015. ,
A 872 genomic view of the human-Bacteroides thetaiotaomicron symbiosis, Science, vol.873, pp.2074-2076, 2003. ,
A 890 genomic view of the human-Bacteroides thetaiotaomicron symbiosis, Science, vol.891, pp.2074-2076, 2003. ,
Identification of a sex-factor-affinity site in E. coli as 893 gamma delta, Cold Spring Harb Symp Quant Biol, vol.45, pp.135-175, 1981. ,
Starch catabolism by a prominent human gut 895 symbiont is directed by the recognition of amylose helices, Structure, vol.896, pp.1105-1115, 1993. ,