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checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes

Abstract : When sequencing several libraries simultaneously, the selection of compatible combinations of indexes is critical for ensuring that the sequencer will be able to decipher the short, sample-specific barcodes added to each fragment. However, researchers have few tools to help them choose optimal indexes. Here, we present checkMyIndex, an online R/Shiny application that facilitates the selection of the right indexes as a function of the experimental constraints.
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Contributor : Hugo Varet <>
Submitted on : Tuesday, April 28, 2020 - 5:49:07 PM
Last modification on : Tuesday, May 5, 2020 - 1:30:51 AM

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Distributed under a Creative Commons Attribution - NonCommercial 4.0 International License

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Hugo Varet, Jean-Yves Coppée. checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes. Bioinformatics, Oxford University Press (OUP), 2019, 35 (5), pp.901-902. ⟨10.1093/bioinformatics/bty706⟩. ⟨pasteur-02557485⟩

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