E. Abbe, The relations of aperture and power in the microscope, J Roy Micro Soc, vol.2, pp.300-309

A. V. Abraham, S. Ram, J. Chao, E. Ward, and R. J. Ober, Quantitative study of single molecule location estimation techniques, Opt Express, vol.17, p.23352

T. Ando, T. Uchihashi, N. Kodera, D. Yamamoto, A. Miyagi et al., High-speed AFM and nano-visualization of biomolecular processes, Eur J Physiol, vol.456, pp.211-225

D. Aquino, A. Schönle, C. Geisler, C. V. Middendorff, C. A. Wurm et al., Two-color nanoscopy of three-dimensional volumes by 4Pi detection of stochastically switched fluorophores, Nat Methods, vol.8, pp.353-359

D. Axelrod, Cell-substrate contacts illuminated by total internal reflection fluorescence, J Cell Biol, vol.89, pp.141-145

D. Baddeley, D. Crossman, S. Rossberger, J. E. Cheyne, J. M. Montgomery et al., 4D super-resolution microscopy with conventional fluorophores and single wavelength excitation in optically thick cells and tissues, PLoS One, vol.6, 20645.

M. Bates, B. Huang, G. T. Dempsey, and X. Zhuang, Multicolor super-resolution imaging with photo-switchable fluorescent probes, Science, vol.317, pp.1749-1753

E. Betzig, Proposed method for molecular optical imaging, Opt Lett, vol.20, pp.237-239

E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych et al., Imaging intracellular fluorescent proteins at nanometer resolution, Science, vol.313, pp.1642-1645

J. S. Biteen, M. A. Thompson, N. K. Tselentis, G. R. Bowman, L. Shapiro et al., Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP, Nat Methods, vol.5, pp.947-949

D. T. Burnette, P. Sengupta, Y. Dai, J. Lippincott-schwartz, and B. Kachar, Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules, Proc Natl Acad Sci, vol.108, pp.21081-21086

J. Chao, S. Ram, A. V. Abraham, S. Ward, E. Ober et al., A resolution measure for three-dimensional microscopy, Optics Comm, vol.282, pp.1751-1761, 2009.

J. Chao, S. Ram, E. S. Ward, and R. J. Ober, A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure, Opt Express, vol.17, pp.24377-24402

M. K. Cheezum, W. F. Walker, and W. H. Guilford, Quantitative comparison of algorithms for tracking single fluorescent particles, Biophys J, vol.81, pp.2378-2388

S. Cox, E. Rosten, J. Monypenny, T. Jovanovic-talisman, D. T. Burnette et al., Bayesian localization microscopy reveals nanoscale podosome dynamics, Nat Methods, vol.9, pp.195-200

C. Cremer and T. Cremer, Considerations on a laserscanning-microscope with high-resolution and depth of field, Microsc Acta, vol.81, pp.31-44

J. C. Crocker and D. G. Grier, Methods of digital video microscopy for colloidal studies, J Colloid Interf Sci, vol.179, pp.298-310

P. Dedecker, G. C. Mo, T. Dertinger, and J. Zhang, Widely accessible method for superresolution fluorescence imaging of living systems, Proc Natl Acad Sci, vol.109, pp.10909-10914

N. De-jonge, D. B. Peckys, G. J. Kremers, and D. W. Piston, Electron microscopy of whole cells in liquid with nanometer resolution, Proc Natl Acad Sci, vol.106, pp.2159-2164

T. Dertinger, R. Colyer, G. Iyer, S. Weiss, and J. Enderlein, Fast, background-free, 3D super-resolution optical fluctuation imaging~SOFI!, Proc Natl Acad Sci, vol.106, pp.22287-22292

S. Ehsani, J. C. Santos, C. D. Rodrigues, R. Henriques, L. Audry et al., Hierarchies of host factor dynamics at the entry site of Shigella flexneri during host cell invasion, Infect Immun, vol.80, pp.2548-2557
URL : https://hal.archives-ouvertes.fr/pasteur-01899474

R. Erni, M. D. Rossell, C. Kisielowski, and U. Dahmen, Atomic-resolution imaging with a sub-50-pm electron probe, Phys Rev Lett, vol.102, p.96101

J. Folling, M. Bossi, H. Bock, R. Medda, C. A. Wurm et al., Fluorescence nanoscopy by ground-state depletion and single-molecule return, Nat Methods, vol.5, pp.943-945

A. Gautier, A. Juillerat, C. Heinis, I. R. Correa, . Jr et al., An engineered protein tag for multiprotein labeling in living cells, Chem Biol, vol.15, pp.128-136

J. Gelles, B. J. Schnapp, and M. P. Sheetz, Tracking kinesindriven movements with nanometre-scale precision, Nature, vol.331, pp.450-453

F. J. Giessibl, Atomic resolution of the silicon~111!-~7?7! surface by atomic force microscopy, Science, vol.267, pp.68-71

M. P. Gordon, T. Ha, and P. R. Selvin, Single-molecule high-resolution imaging with photobleaching, Proc Natl Acad Sci, vol.101, p.6462

D. Greenfield, A. L. Mcevoy, H. Shroff, G. E. Crooks, N. S. Wingreen et al., Self-organization of the Escherichia coli chemotaxis network imaged with superresolution light microscopy, PLoS Biol, vol.7, p.1000137

M. G. Gustafsson, Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy, J Microsc, vol.198, pp.82-87

P. Hänninen, S. Hell, J. Salo, E. Soini, and C. Cremer, Two-photon excitation 4Pi confocal microscope: Enhanced axial resolution microscope for biological research, Appl Phys Lett, vol.66, p.1698

P. N. Hedde, J. Fuchs, F. Oswald, J. Wiedenmann, and G. U. Nienhaus, Online image analysis software for photoactivation localization microscopy, Nat Methods, vol.6, pp.689-690

M. Heilemann, S. Van-de-linde, A. Mukherjee, and M. Sauer, Super-resolution imaging with small organic fluorophores, Angew Chem Int Edit, vol.48, pp.6903-6908, 2009.

S. W. Hell and J. Wichmann, Breaking the diffraction resolution limit by stimulated emission: Stimulated-emissiondepletion fluorescence microscopy, Opt Lett, vol.19, pp.780-782

R. Henriques, C. Griffiths, E. Hesper-rego, M. M. Mhlanga, and . ~2011!, PALM and STORM: Unlocking live-cell superresolution, Biopolymers, vol.95, pp.322-331

R. Henriques, M. Lelek, E. F. Fornasiero, F. Valtorta, C. Zimmer et al., QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ, Nat Methods, vol.7, pp.339-340
URL : https://hal.archives-ouvertes.fr/pasteur-02081312

R. Henriques, M. M. Mhlanga, and . ~2009!, PALM and STORM: What hides beyond the Rayleigh limit?, Biotechnol J, vol.4, pp.846-857

S. T. Hess, T. P. Girirajan, and M. D. Mason, Ultra-high resolution imaging by fluorescence photoactivation localization microscopy, Biophys J, vol.91, pp.4258-4272

S. J. Holden, S. Uphoff, and A. N. Kapanidis, DAOSTORM: An algorithm for high-density super-resolution microscopy, Nat Methods, vol.8, pp.279-280

K. Hu, L. Ji, K. T. Applegate, G. Danuser, and C. M. Waterman-storer, Differential transmission of actin motion within focal adhesions, Science's STKE, vol.315, p.111

B. Huang, M. Bates, and X. Zhuang, Super-resolution fluorescence microscopy, Annu Rev Biochem, vol.78, pp.993-1016

B. Huang, S. A. Jones, B. Brandenburg, and X. Zhuang, Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution, Nat Methods, vol.5, pp.1047-1052

B. Huang, W. Wang, M. Bates, and X. Zhuang, Threedimensional super-resolution imaging by stochastic optical reconstruction microscopy, Science, vol.319, pp.810-813

F. Huang, S. L. Schwartz, J. M. Byars, and K. A. Lidke, Simultaneous multiple-emitter fitting for single molecule superresolution imaging, Biomed Opt Express, vol.2, pp.1377-1393

E. A. Jares-erijman, T. M. Jovin, . ~2003!.-fret, and . Imaging, Nat Biotechnol, vol.21, pp.1387-1395

S. A. Jones, S. H. Shim, J. He, and X. Zhuang, Fast, threedimensional super-resolution imaging of live cells, Nat Methods, vol.8, pp.499-505

M. F. Juette, T. J. Gould, M. D. Lessard, M. J. Mlodzianoski, B. S. Nagpure et al., Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples, Nat Methods, vol.5, pp.527-529, 2008.

H. P. Kao and A. Verkman, Tracking of single fluorescent particles in three dimensions: Use of cylindrical optics to encode particle position, Biophys J, vol.67, pp.1291-1300

T. A. Klar, S. Jakobs, M. Dyba, A. Egner, and S. W. Hell, Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission, Proc Natl Acad Sci, vol.97, p.8206

T. Klein, A. Löschberger, S. Proppert, S. Wolter, S. Van-de-linde et al., Live-cell dSTORM with SNAPtag fusion proteins, Nat Methods, vol.8, pp.7-9

P. Kner, B. B. Chhun, E. R. Griffis, L. Winoto, and M. G. Gustafsson, Super-resolution video microscopy of live cells by structured illumination, Nat Methods, vol.6, pp.339-342

T. D. Lacoste, X. Michalet, F. Pinaud, D. S. Chemla, A. P. Alivisatos et al., Ultrahigh-resolution multicolor colocalization of single fluorescent probes, Proc Natl Acad Sci, vol.97, p.9461

M. Lelek, F. Di-nunzio, R. Henriques, P. Charneau, N. Arhel et al., Superresolution imaging of HIV in infected cells with FlAsH-PALM, Proc Natl Acad Sci, vol.109, pp.8564-8569
URL : https://hal.archives-ouvertes.fr/pasteur-01536166

K. Lidke, B. Rieger, T. Jovin, and R. Heintzmann, Superresolution by localization of quantum dots using blinking statistics, Opt Express, vol.13, pp.7052-7062

A. Löschberger, S. Van-de-linde, M. C. Dabauvalle, B. Rieger, M. Heilemann et al., Superresolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution, J Cell Sci, vol.125, pp.570-575

K. A. Lukyanov, D. M. Chudakov, S. Lukyanov, V. V. Verkhusha, and . ~2005!, Innovation: Photoactivatable fluorescent proteins, Nat Rev Mol Cell Biol, vol.6, pp.885-891

H. Ma, F. Long, S. Zeng, and Z. L. Huang, Fast and precise algorithm based on maximum radial symmetry for single molecule localization, Opt Lett, vol.37, pp.2481-2483

S. Manley, J. M. Gillette, G. H. Patterson, H. Shroff, H. F. Hess et al., Highdensity mapping of single-molecule trajectories with photoactivated localization microscopy, Nat Methods, vol.5, pp.155-157

A. Matsuda, L. Shao, J. Boulanger, C. Kervrann, P. M. Carlton et al., Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFP-histones, PLoS One, vol.5, 12768.
URL : https://hal.archives-ouvertes.fr/inria-00541020

A. L. Mattheyses, S. M. Simon, and J. Z. Rappoport, Imaging with total internal reflection fluorescence microscopy for the cell biologist, J Cell Sci, vol.123, pp.3621-3628

R. J. Ober, S. Ram, and E. S. Ward, Localization accuracy in single-molecule microscopy, Biophys J, vol.86, pp.1185-1200

R. Parthasarathy, Rapid, accurate particle tracking by calculation of radial symmetry centers, Nat Methods, vol.9, pp.724-726

S. R. Pavani, M. A. Thompson, J. S. Biteen, S. J. Lord, N. Liu et al., Threedimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function, Proc Natl Acad Sci, vol.106, pp.2995-2999

A. Pertsinidis, Y. Zhang, and S. Chu, Subnanometre single-molecule localization, registration and distance measurements, Nature, vol.466, pp.647-651

X. Qu, D. Wu, L. Mets, and N. F. Scherer, Nanometerlocalized multiple single-molecule fluorescence microscopy, Proc Natl Acad Sci, vol.101, 11298.

J. Ries, C. Kaplan, E. Platonova, H. Eghlidi, and H. Ewers, A simple, versatile method for GFP-based superresolution microscopy via nanobodies, Nat Methods, vol.9, pp.582-584, 2012.

J. Rino, J. Braga, R. Henriques, and M. Carmo-fonseca, Frontiers in fluorescence microscopy, Int J Dev Biol, vol.53, pp.1569-1579

S. S. Rogers, T. A. Waigh, X. Zhao, and J. R. Lu, Precise particle tracking against a complicated background: Polynomial fitting with Gaussian weight, Phys Biol, vol.4, p.220

M. J. Rust, M. Bates, and X. Zhuang, Sub-diffraction-limit imaging by stochastic optical reconstruction microscop? STORM!, Nat Methods, vol.3, pp.793-795

L. Schermelleh, R. Heintzmann, and H. Leonhardt, A guide to super-resolution fluorescence microscopy, J Cell Biol, vol.190, pp.165-175

R. Schmidt, C. A. Wurm, S. Jakobs, J. Engelhardt, A. Egner et al., Spherical nanosized focal spot unravels the interior of cells, Nat Methods, vol.5, pp.539-544

H. Shroff, C. G. Galbraith, J. A. Galbraith, and E. Betzig,

!. , Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics, Nat Methods, vol.5, pp.417-423

G. Shtengel, J. A. Galbraith, C. G. Galbraith, J. Lippincott-schwartz, J. M. Gillette et al., Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure, Proc Natl Acad Sci, vol.106, p.3125

P. D. Simonson, E. Rothenberg, and P. R. Selvin, Singlemolecule-based super-resolution images in the presence of multiple fluorophores, Nano Lett, vol.11, issue.11, pp.5090-5096

C. S. Smith, N. Joseph, B. Rieger, and K. A. Lidke, Fast, single-molecule localization that achieves theoretically minimum uncertainty, Nat Methods, vol.7, pp.373-375

C. Steinhauer, C. Forthmann, J. Vogelsang, and P. Tinnefeld, Superresolution microscopy on the basis of engineered dark states, J Am Chem Soc, vol.130, pp.16840-16841, 2008.

R. E. Thompson, D. R. Larson, and W. W. Webb, Precise nanometer localization analysis for individual fluorescent probes, Biophys J, vol.82, pp.2775-2783

M. Tokunaga, N. Imamoto, and K. Sakata-sogawa, Highly inclined thin illumination enables clear single-molecule imaging in cells, Nat Methods, vol.5, pp.159-161

T. V. Truong, W. Supatto, D. S. Koos, J. M. Choi, and S. E. Fraser, Deep and fast live imaging with two-photon scanned light-sheet microscopy, Nat Methods, vol.8, pp.757-760, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00803780

A. Van-oijen, J. Köhler, J. Schmidt, M. Müller, and G. Brakenhoff, 3-Dimensional super-resolution by spectrally selective imaging, Chem Phys Lett, vol.292, pp.183-187

A. Vaziri, J. Tang, H. Shroff, and C. V. Shank, Multilayer three-dimensional super resolution imaging of thick biological samples, Proc Natl Acad Sci, vol.105, pp.20221-20226

J. Vogelsang, R. Kasper, C. Steinhauer, B. Person, M. Heilemann et al., A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes, Angew Chem Int Ed Engl, vol.47, pp.5465-5469

S. Wolter, M. Schüttpelz, M. Tscherepanow, S. Van-de-linde, M. Heilemann et al., Real-time computation of sub-diffraction-resolution fluorescence images, J Microsc, vol.237, pp.12-22

R. Wombacher, M. Heidbreder, S. Van-de-linde, M. P. Sheetz, M. Heilemann et al., Live-cell super-resolution imaging with trimethoprim conjugates, Nat Methods, vol.7, pp.717-719

K. Xu, H. P. Babcock, and X. Zhuang, Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton, Nat Methods, vol.9, pp.185-188

A. Yildiz, J. N. Forkey, S. A. Mckinney, T. Ha, Y. E. Goldman et al., Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization, Science, vol.300, pp.2061-2065

A. G. York, A. Ghitani, A. Vaziri, M. W. Davidson, and H. Shroff, Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes, Nat Methods, vol.8, pp.327-333

F. C. Zanacchi, Z. Lavagnino, M. P. Donnorso, A. Del-bue, L. Furia et al., Live-cell 3D super-resolution imaging in thick biological samples, Nat Methods, vol.8, pp.1047-1049

L. Zhu, W. Zhang, D. Elnatan, and B. Huang, Faster STORM using compressed sensing, Nat Methods 9~7, pp.721-723