Divergent viruses discovered in arthropods and vertebrates revise the evolutionary history of the Flaviviridae and related viruses, J Virol, vol.90, pp.659-669, 2016. ,
A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors, Proc Natl Acad Sci U S A, vol.111, pp.6744-6749, 2014. ,
, Emergence of human infection with Jingmen tick virus in China: a retrospective study, vol.43, pp.317-324, 2019.
Characterisation of divergent flavivirus NS3 and NS5 protein sequences detected in Rhipicephalus microplus ticks from Brazil, Mem Inst Oswaldo Cruz, vol.109, pp.38-50, 2014. ,
Viral diversity of tick species parasitizing cattle and dogs in Trinidad and Tobago, Sci Rep, vol.9, 2019. ,
A new segmented virus associated with human febrile illness in China, N Engl J Med, vol.380, pp.2116-2125, 2019. ,
Detection of novel tick-borne pathogen, Alongshan virus, in Ixodes ricinus ticks, south-eastern Finland, Euro Surveill, vol.24, 2019. ,
A multicomponent animal virus isolated from mosquitoes, Cell Host Microbe, vol.20, pp.357-367, 2016. ,
Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil, Sci Rep, vol.8, p.16315, 2018. ,
Viral metagenomics, genetic and evolutionary characteristics of Crimean-Congo hemorrhagic fever orthonairovirus in humans, Infect Genet Evol, vol.65, pp.6-11, 2018. ,
Virome analysis of tick-borne viruses in Heilongjiang Province, China. Ticks Tick Borne Dis, vol.10, pp.412-420, 2019. ,
Non-viraemic transmission of tick-borne encephalitis virus: a mechanism for arbovirus survival in nature, Experientia, vol.49, pp.802-805, 1993. ,
Factors in the emergence of infectious diseases, Emerg Infect Dis, vol.1, pp.7-15, 1995. ,
The evolution of Zika virus from Asia to the Americas, Nat Rev Microbiol, vol.17, pp.131-139, 2019. ,
The emergence of severe fever with thrombocytopenia syndrome virus, Am J Trop Med Hyg, vol.97, pp.992-996, 2017. ,
Reassortment in segmented RNA viruses: mechanisms and outcomes, Nat Rev Microbiol, vol.14, pp.448-460, 2016. ,
RNA virus reassortment: an evolutionary mechanism for host jumps and immune evasion, PLoS Pathog, vol.11, 2015. ,
Arthropods and associated arthropod-borne diseases transmitted by migrating birds. The case of ticks and tick-borne pathogens, Vet Parasitol, vol.213, pp.61-66, 2015. ,
Insight into the global evolution of Rodentia associated Morbilli-related paramyxoviruses, Sci Rep, vol.7, 1974. ,
URL : https://hal.archives-ouvertes.fr/hal-01534743
Livestock trade network: potential for disease transmission and implications for risk-based surveillance on the island of Mayotte, Sci Rep, vol.8, p.11550, 2018. ,
Pteropus lylei primarily forages in residential areas in Kandal, Cambodia. Ecol Evol, vol.9, pp.4181-4191, 2019. ,
Long-distance and frequent movements of the flying-fox Pteropus poliocephalus: implications for management, PLoS One, vol.7, 2012. ,
Bats: important reservoir hosts of emerging viruses, Clin Microbiol Rev, vol.19, pp.531-545, 2006. ,
Diversity of viruses in Ixodes ricinus, and characterization of a neurotropic strain of Eyach virus, New Microbes New Infect, vol.11, pp.71-81, 2016. ,
Next generation sequencing uncovers unexpected bacterial pathogens in ticks in Western Europe, PLoS One, vol.8, p.81439, 2013. ,
Borrelia diversity and co-infection with other tick borne pathogens in ticks, Front Cell Infect Microbiol, vol.7, p.36, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01603856
Upscaling surveillance of tick-borne pathogens in the French Caribbean islands ,
, Investigating the role of bats in emerging zoonoses: balancing ecology, conservation and public health interests, 2011.
, Food and Agriculture Organization of the United Nations
Monitoring silent spillovers before emergence: a pilot study at the tick/human interface in Thailand, 2019. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02318851
RVDB-prot, a reference viral protein database and its HMM profiles [version 1; peer review: awaiting peer review, 2019. ,
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization, Brief Bioinform, 2017. ,
SMS: Smart Model Selection in PhyML, Mol Biol Evol, vol.34, pp.2422-2424, 2017. ,
URL : https://hal.archives-ouvertes.fr/lirmm-01794206
Creating the CIPRES Science Gateway for inference of large phylogenetic trees, Proceedings of the Gateway Computing Environments Workshop (GCE, pp.1-8, 2010. ,
MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, vol.19, pp.1572-1574, 2003. ,
Rapid antibody quantification and generation of whole proteome antibody response profiles using LIPS (luciferase immunoprecipitation systems), Biochem Biophys Res Commun, vol.352, pp.889-895, 2007. ,
Antibody profiling by Luciferase Immunoprecipitation Systems (LIPS), J Vis Exp, 2009. ,