, Infectious Diseases of Humans: Dynamics and Control, 1992.
Strategies for containing an emerging influenza pandemic in Southeast Asia, Nature, vol.437, pp.209-214, 2005. ,
Optimizing infectious disease interventions during an emerging epidemic, Proc. Natl. Acad. Sci. U. S. A, vol.107, pp.923-928, 2010. ,
Assessing optimal target populations for influenza vaccination programmes: an evidence synthesis and modelling study, PLoS Med, vol.10, p.1001527, 2013. ,
Model for assessing human papillomavirus vaccination strategies, Emerg. Infect. Dis, vol.13, pp.28-41, 2007. ,
Results from the second year of a collaborative effort to forecast influenza seasons in the United States, Epidemics, vol.24, pp.26-33, 2018. ,
Real-time influenza forecasts during the 2012-2013 season, Nat. Commun, vol.4, 2013. ,
Improving vaccine trials in infectious disease emergencies, Science, vol.357, pp.153-156, 2017. ,
Choices in vaccine trial design in epidemics of emerging infections, PLoS Med, vol.15, p.1002632, 2018. ,
Statistical power and validity of Ebola vaccine trials in Sierra Leone: a simulation study of trial design and analysis, Lancet Infect. Dis, vol.15, pp.703-710, 2015. ,
Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections, N. Engl. J. Med, vol.371, pp.1481-1495, 2014. ,
Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings, Science, vol.324, pp.1557-1561, 2009. ,
Mathematical models of infectious disease transmission, Nat. Rev. Microbiol, vol.6, pp.477-487, 2008. ,
Modeling infectious disease dynamics in the complex landscape of global health, Science, vol.347, p.4339, 2015. ,
Opportunities and challenges in modeling emerging infectious diseases, Science, vol.357, pp.149-152, 2017. ,
Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study, Lancet Infect. Dis, vol.15, pp.320-326, 2015. ,
PUBLIC HEALTH: Enhanced: Public Health Risk from the Avian H5N1 Influenza Epidemic, Science, vol.304, pp.968-969, 2004. ,
Comparing methods for estimating R0 from the size distribution of subcritical transmission chains, Epidemics, vol.5, pp.131-145, 2013. ,
Inference of R(0) and transmission heterogeneity from the size distribution of stuttering chains, PLoS Comput. Biol, vol.9, p.1002993, 2013. ,
Superspreading and the effect of individual variation on disease emergence, Nature, vol.438, pp.355-359, 2005. ,
Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus, PLoS Med, vol.10, p.1001399, 2013. ,
A Bayesian MCMC approach to study transmission of influenza: application to household longitudinal data, Stat. Med, vol.23, pp.3469-3487, 2004. ,
Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States, N. Engl. J. Med, vol.361, pp.2619-2627, 2009. ,
Household Transmission of Influenza Virus, Trends Microbiol, vol.24, pp.123-133, 2016. ,
Individual Correlates of Infectivity of Influenza A Virus Infections in Households, PLoS One, vol.11, p.154418, 2016. ,
Influenza A Virus Shedding and Infectivity in Households, J. Infect. Dis, vol.212, pp.1420-1428, 2015. ,
Association between antibody titers and protection against influenza virus infection within households, J. Infect. Dis, vol.210, pp.684-692, 2014. ,
Serial intervals and the temporal distribution of secondary infections within households of 2009 pandemic influenza A (H1N1): implications for influenza control recommendations, Clin. Infect. Dis, vol.52, pp.123-153, 2011. ,
Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza, Proceedings of the National Academy of Sciences, vol.108, pp.2825-2830, 2011. ,
How social structures, space, and behaviors shape the spread of infectious diseases using chikungunya as a case study, Proc. Natl. Acad. Sci. U. S. A, vol.113, pp.13420-13425, 2016. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01399365
How generation intervals shape the relationship between growth rates and reproductive numbers, Proc. Biol. Sci, vol.274, pp.599-604, 2007. ,
Transmissibility of 1918 pandemic influenza, Nature, vol.432, pp.904-906, 2004. ,
Different epidemic curves for severe acute respiratory syndrome reveal similar impacts of control measures, Am. J. Epidemiol, vol.160, pp.509-516, 2004. ,
A new framework and software to estimate time-varying reproduction numbers during epidemics, Am. J. Epidemiol, vol.178, pp.1505-1512, 2013. ,
Estimating in real time the efficacy of measures to control emerging communicable diseases, Am. J. Epidemiol, vol.164, pp.591-597, 2006. ,
Real-time estimates in early detection of SARS, Emerg. Infect. Dis, vol.12, pp.110-113, 2006. ,
Assessing endgame strategies for the elimination of lymphatic filariasis: A model-based evaluation of the impact of DEC-medicated salt, Sci. Rep, vol.7, p.7386, 2017. ,
Mathematical models and lymphatic filariasis control: endpoints and optimal interventions, Trends Parasitol, vol.22, pp.226-233, 2006. ,
Estimating the elimination feasibility in the "end game" of control efforts for parasites subjected to regular mass drug administration: Methods and their application to schistosomiasis, PLoS Negl. Trop. Dis, vol.12, p.6794, 2018. ,
Time series modelling of childhood diseases: a dynamical systems approach, J. R. Stat. Soc. Ser. C Appl. Stat, vol.49, pp.187-205, 2000. ,
Absolute humidity and the seasonal onset of influenza in the continental United States, PLoS Biol, vol.8, p.1000316, 2010. ,
Estimating drivers of autochthonous transmission of chikungunya virus in its invasion of the americas, PLoS Curr, vol.7, 2015. ,
The effect of public health measures on the 1918 influenza pandemic in U.S. cities, Proc. Natl. Acad. Sci. U. S. A, vol.104, pp.7588-7593, 2007. ,
Epidemic dynamics, interactions and predictability of enteroviruses associated with hand, foot and mouth disease in Japan, J. R. Soc. Interface, vol.15, 2018. ,
Interactions between serotypes of dengue highlight epidemiological impact of cross-immunity, J. R. Soc. Interface, vol.10, 2013. ,
Research on dengue during World War II, Am. J. Trop. Med. Hyg, vol.1, pp.30-50, 1952. ,
The dengue group of viruses and its family relationships, Bacteriol. Rev, vol.14, pp.225-232, 1950. ,
Seventy-five years of estimating the force of infection from current status data, Epidemiol. Infect, vol.138, pp.802-812, 2010. ,
Reconstruction of 60 Years of Chikungunya Epidemiology in the Philippines Demonstrates Episodic and Focal Transmission, J. Infect. Dis, vol.213, pp.604-610, 2016. ,
Modelling historical changes in the force-of-infection of Chagas disease to inform control and elimination programmes: application in Colombia, BMJ Glob Health, vol.2, p.345, 2017. ,
Estimating medium-and long-term trends in malaria transmission by using serological markers of malaria exposure, Proc. Natl. Acad. Sci. U. S. A, vol.102, pp.5108-5113, 2005. ,
Seroprevalence of Antibodies against Plasmodium falciparum Sporozoite Antigens as Predictive Disease Transmission Markers in an Area of Ghana with Seasonal Malaria Transmission, PLoS One, vol.11, p.167175, 2016. ,
Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia, Am. J. Epidemiol, vol.183, pp.657-663, 2016. ,
Optimizing the precision of case fatality ratio estimates under the surveillance pyramid approach, Am. J. Epidemiol, vol.180, pp.1036-1046, 2014. ,
The severity of pandemic H1N1 influenza in the United States, PLoS Med, vol.6, p.1000207, 2009. ,
Influenza transmission in households during the 1918 pandemic, Am. J. Epidemiol, vol.174, pp.505-514, 2011. ,
Household and community transmission parameters from final distributions of infections in households, Biometrics, vol.38, pp.115-126, 1982. ,
How to Make Epidemiological Training Infectious, PLoS Biol, vol.10, p.1001295, 2012. ,
Epidemics: Models and Data with R, 2018. ,
Digital epidemiology: what is it, and where is it going?, Life Sci Soc Policy, vol.14, p.1, 2018. ,
Establishment and cryptic transmission of Zika virus in Brazil and the Americas, Nature, vol.546, pp.406-410, 2017. ,
Virus genomes reveal factors that spread and sustained the Ebola epidemic, Nature, vol.544, pp.309-315, 2017. ,
Social contacts and mixing patterns relevant to the spread of infectious diseases, PLoS Med, vol.5, p.74, 2008. ,
Nine challenges in incorporating the dynamics of behaviour in infectious diseases models, Epidemics, vol.10, pp.21-25, 2015. ,
Inference for nonlinear dynamical systems, Proc. Natl. Acad. Sci. U. S. A, vol.103, pp.18438-18443, 2006. ,
Inapparent infections and cholera dynamics, Nature, vol.454, pp.877-880, 2008. ,
Capturing the time-varying drivers of an epidemic using stochastic dynamical systems, Biostatistics, vol.14, pp.541-555, 2013. ,