, Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses, pp.855-880, 2012.
The Big Bang of picornalike virus evolution antedates the radiation of eukaryotic supergroups, Nat Rev Micro, vol.6, pp.925-939, 2008. ,
Polycipiviridae: a proposed new family of polycistronic picorna-like RNA viruses, J Gen Virol, vol.98, pp.2368-2378, 2017. ,
Bats as viral reservoirs, Annu Rev Virol, vol.3, pp.77-99, 2016. ,
Viral metagenomics of six bat species in close contact with humans in southern China, Arch Virol, vol.163, pp.73-88, 2018. ,
A metagenomic viral discovery approach identifies potential zoonotic and novel mammalian viruses in Neoromicia bats within South Africa, PLoS One, vol.13, 2018. ,
Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats, BMC Genomics, vol.18, p.249, 2017. ,
Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam, Virus Evol, vol.3, 2017. ,
, Investigating the role of bats in emerging zoonoses: balancing ecology, conservation and public health interests, 2011.
AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries, Front Genet, vol.5, p.130, 2014. ,
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph, Bioinformatics, vol.31, pp.1674-1676, 2015. ,
A reference viral database (RVDB) to enhance bioinformatics analysis of high-throughput sequencing for novel virus detection, vol.3, pp.69-87, 2018. ,
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization, 2017. ,
SMS: smart model selection in PhyML, Mol Biol Evol, vol.34, pp.2422-2424, 2017. ,
URL : https://hal.archives-ouvertes.fr/lirmm-01794206
Creating the CIPRES Science Gateway for inference of large phylogenetic trees, Proceedings of the Gateway Computing Environments Workshop (GCE). IEEE, Piscataway, pp.1-8, 2010. ,