The two groups of zebrafish virus-induced interferons signal via distinct receptors with specific and shared chains, J. Immunol, vol.183, pp.3924-3955, 2009. ,
The 3 major types of innate and adaptive cellmediated effector immunity, J. Allergy Clin. Immunol, vol.135, pp.626-661, 2015. ,
The biology of innate lymphoid cells, Nature, vol.517, pp.293-301, 2015. ,
Single-cell RNAsequencing uncovers transcriptional states and fate decisions in haematopoiesis, Nat. Commun, vol.8, 2017. ,
The heterogeneity of human CD127+ innate lymphoid cells revealed by single-cell RNA sequencing, Nat. Immunol, vol.17, pp.451-460, 2016. ,
Evolution of Vertebrate Immunity, Curr. Biol, vol.22, pp.722-732, 2012. ,
Accounting for technical noise in single-cell RNAseq experiments, Nat. Methods, vol.10, pp.1093-1095, 2013. ,
The zebrafish as a model to study intestinal inflammation, Dev. Comp. Immunol, vol.64, pp.82-92, 2016. ,
Integrating single-cell transcriptomic data across different conditions, technologies, and species, Nat. Biotechnol, vol.36, pp.411-420, 2018. ,
Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types, Genome Res, vol.27, pp.451-461, 2017. ,
Zebrafish in hematology: sushi or science?, Blood, vol.111, pp.3331-3342, 2008. ,
Innate lymphoid cells mediate influenza-induced airway hyper-reactivity independently of adaptive immunity, Nat. Immunol, vol.12, pp.631-639, 2011. ,
Identification of interleukin-22 in gadoids and examination of its expression level in vaccinated fish, Mol. Immunol, vol.46, pp.2098-2106, 2009. ,
CD4-Transgenic Zebrafish Reveal TissueResident Th2-and Regulatory T Cell-like Populations and Diverse Mononuclear Phagocytes, J. Immunol, vol.197, pp.3520-3530, 2016. ,
Killer lymphocytes use granulysin, perforin and granzymes to kill intracellular parasites, Nat. Med, vol.22, pp.210-216, 2016. ,
Innate lymphoid cells. Innate lymphoid cells: a new paradigm in immunology, Science, vol.348, p.6566, 2015. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02101002
IL-25 induces IL-4, IL-5, and IL-13 and Th2-associated pathologies in vivo, Immunity, vol.15, pp.985-95, 2001. ,
ROR?t+ Innate Lymphoid Cells Acquire a Proinflammatory Program upon Engagement of the Activating Receptor NKp44, Immunity, vol.38, pp.1223-1235, 2013. ,
Innate lymphoid cells, precursors and plasticity, Immunol. Lett, vol.179, pp.9-18, 2016. ,
Mapping Cellular Hierarchy by Single-Cell Analysis of the Cell Surface Repertoire, Cell Stem Cell, vol.13, pp.492-505, 2013. ,
Isolation and Characterization of Mouse Innate Lymphoid Cells, Current Protocols in Immunology, 2014. ,
Interferon-? and interleukin 22 act synergistically for the induction of interferon-stimulated genes and control of rotavirus infection, Nat. Immunol, vol.16, pp.698-707, 2015. ,
The Transcription Factor GATA-3 Controls Cell Fate and Maintenance of Type 2 Innate Lymphoid Cells, Immunity, vol.37, pp.634-648, 2012. ,
New IL-17 family members promote Th1 or Th2 responses in the lung: in vivo function of the novel cytokine IL-25, J. Immunol, vol.169, pp.443-53, 2002. ,
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types, Science, vol.343, pp.776-785, 2014. ,
Identification and characterization of T reg-like cells in zebrafish, J. Exp. Med, vol.214, pp.3519-3530, 2017. ,
Recognition strategies of group 3 innate lymphoid cells, Front. Immunol, vol.5, p.142, 2014. ,
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts, Genome Biol, vol.17, p.75, 2016. ,
Lymphoid Tissue Inducer Cells: Pivotal Cells in the Evolution of CD4 Immunity and Tolerance? Front, 2012. ,
In vivo tracking of T cell development, ablation, and engraftment in transgenic zebrafish, Proc. Natl. Acad. Sci. U. S. A, vol.101, pp.7369-74, 2004. ,
T-bet: a bridge between innate and adaptive immunity, Nat. Rev. Immunol, vol.13, pp.777-789, 2013. ,
IMGT®, the international ImMunoGeneTics information system® 25 years on, Nucleic Acids Res, vol.43, pp.413-422, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01101330
All rights reserved. No reuse allowed without permission. (which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. The copyright holder for this preprint, 2018. ,
, Systemic Human ILC Precursors Provide a Substrate for Tissue ILC Differentiation, vol.168, pp.1086-1100, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01501939
Developmental options and functional plasticity of innate lymphoid cells, Curr. Opin. Immunol, vol.44, pp.61-68, 2017. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02054189
BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNAsequencing, 2017. ,
, Nature, vol.528, pp.560-564, 2015.
Developing lymph nodes collect CD4+CD3-LTbeta+ cells that can differentiate to APC, NK cells, and follicular cells but not T or B cells, Immunity, vol.7, pp.493-504, 1997. ,
Exposure to the fish parasite Anisakis causes allergic airway hyperreactivity and dermatitis, J. Allergy Clin. Immunol, vol.117, pp.1098-1105, 2006. ,
Salmon provides fast and bias-aware quantification of transcript expression, Nat. Methods, vol.14, pp.417-419, 2017. ,
Characterization of rag1 mutant zebrafish leukocytes, BMC Immunol, vol.10, 2009. ,
Smart-seq2 for sensitive full-length transcriptome profiling in single cells, Nat. Methods, vol.10, pp.1096-1098, 2013. ,
Innate immunity in vertebrates: an overview, Immunology, vol.148, pp.125-164, 2016. ,
ROR?t and commensal microflora are required for the differentiation of mucosal interleukin 22-producing NKp46+ cells, Nat. Immunol, vol.10, pp.83-91, 2009. ,
Innate immunodeficiency following genetic ablation of Mcl1 in natural killer cells, Nat. Commun, vol.5, p.4539, 2014. ,
Microbial Flora Drives Interleukin 22 Production in Intestinal NKp46+ Cells that Provide Innate Mucosal Immune Defense, Immunity, vol.29, pp.958-970, 2008. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01402754
ROR?t+ innate lymphoid cells regulate intestinal homeostasis by integrating negative signals from the symbiotic microbiota, Nat. Immunol, vol.12, pp.320-326, 2011. ,
A Progenitor Cell Expressing Transcription Factor ROR?t Generates All Human All rights reserved. No reuse allowed without permission. (which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. The copyright holder for this preprint, 2016. ,
, Innate Lymphoid Cell Subsets. Immunity, vol.44, pp.1140-50
Human Innate Lymphoid Cell Subsets Possess Tissue-Type Based Heterogeneity in Phenotype and Frequency, Immunity, vol.46, pp.148-161, 2017. ,
Innate lymphoid cells -a proposal for uniform nomenclature, Nat. Rev. Immunol, vol.13, 2013. ,
T cell fate and clonality inference from single-cell transcriptomes, Nat. Methods, vol.13, pp.329-332, 2016. ,
Lymphoid tissue inducer-like cells are an innate source of IL-17 and IL-22, J. Exp. Med, vol.206, pp.35-41, 2009. ,
Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing, J. Exp. Med, vol.214, pp.2875-2887, 2017. ,
Comprehensive validation of T-and B-cell deficiency in rag1-null zebrafish: Implication for the robust innate defense mechanisms of teleosts, Sci. Rep, vol.7, p.7536, 2017. ,
MCL-1 is required throughout B-cell development and its loss sensitizes specific B-cell subsets to inhibition of BCL-2 or BCL-XL, Cell Death Dis, vol.7, pp.2345-2345, 2016. ,
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, p.4573, 2017. ,
Innate lymphoid cells -how did we miss them?, Nat. Rev. Immunol, vol.13, issue.2, pp.75-87, 2013. ,
CD4-CD8 lineage differentiation: Thpok-ing into the nucleus, J. Immunol, vol.183, pp.2903-2913, 2009. ,
Regulatory Innate Lymphoid Cells Control Innate Intestinal Inflammation In Brief Regulatory Innate Lymphoid Cells Control Innate Intestinal Inflammation, Cell, vol.171, pp.201-216, 2017. ,
The zebrafish activating immune receptor Nitr9 signals via Dap12, Immunogenetics, vol.59, pp.813-821, 2007. ,
Target-Selected Inactivation of the Zebrafish rag1 Gene, vol.297, pp.99-102, 2002. ,
Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations, Cell Stem Cell, vol.16, pp.712-724, 2015. ,
Characterization of the mononuclear phagocyte system in zebrafish, Blood, vol.117, pp.7126-7135, 2011. ,
IL-22 Increases the Innate Immunity of Tissues, Immunity, vol.21, pp.241-254, 2004. ,
Mcl-1: a highly regulated cell death and survival controller, J Biomed Sci, vol.13, issue.2, pp.201-205, 2006. ,
Developmental and tissue-specific expression of NITRs, Immunogenetics, vol.62, pp.117-139, 2010. ,
, Nat. Commun, vol.8, p.14049, 2017.
Interleukin-22 mediates early host defense against attaching and effacing bacterial pathogens, Nat. Med, vol.14, pp.282-289, 2008. ,