A. Rizzoli, M. A. Jimenez-clavero, L. Barzon, P. Cordioli, J. Figuerola et al., The challenge of West Nile virus in Europe: knowledge gaps and research priorities, Euro Surv, vol.20, 1920.
URL : https://hal.archives-ouvertes.fr/pasteur-01659350

L. R. Petersen, A. C. Brault, and R. S. Nasci, West Nile virus: review of the literature, JAMA, vol.310, pp.308-323, 2013.

L. Cnops, A. Papa, F. Lagra, P. Weyers, K. Meersman et al., West Nile virus infection in Belgian traveler returning from Greece, Emerg Infect Dis, vol.19, pp.684-689, 2013.

D. Van-den-bossche, L. Cnops, K. Meersman, C. Domingo, A. Van-gompel et al., Chikungunya virus and West Nile virus infections imported into Belgium, pp.2007-2012

, Epidemiol Infect, vol.143, pp.2227-2263, 2015.

N. Conceição-neto, M. Zeller, H. Lefrère, P. De-bruyn, L. Beller et al., Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis, Sci Rep, vol.5, p.16532, 2015.

N. Conceição-neto, M. Zeller, H. Lefrère, P. De-bruyn, L. Beller et al., NetoVIR: a reproducible protocol for virome analysis, 2016.

A. Bankevich, S. Nurk, D. Antipov, A. A. Gurevich, M. Dvorkin et al., SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J Comput Biol, vol.19, pp.455-77, 2012.
DOI : 10.1089/cmb.2012.0021

URL : http://europepmc.org/articles/pmc3342519?pdf=render

B. Buchfink, C. Xie, and D. H. Huson, Fast and sensitive protein alignment using DIAMOND, Nat Methods, vol.12, pp.59-60, 2015.
DOI : 10.1038/nmeth.3176

E. Wollants, D. Coster, S. Van-ranst, M. Maes, and P. , A decade of norovirus genetic diversity in Belgium, Infect Genet Evol, vol.30, pp.37-44, 2015.

C. Schabereiter-gurtner, M. Nehr, P. Apfalter, A. Makristathis, M. L. Rotter et al., Evaluation of a protocol for molecular broad-range diagnosis of culture-negative bacterial infections in clinical routine diagnosis, J Appl Microbiol, vol.104, pp.1228-1265, 2008.

G. Devulder, G. Perrière, F. Baty, and J. P. Flandrois, BIBI, a bioinformatics bacterial identification tool, J Clin Microbiol, vol.41, pp.1785-1792, 2003.
URL : https://hal.archives-ouvertes.fr/hal-00427401

I. Meeus, V. Vercruysse, and G. Smagghe, Molecular detection of Spiroplasma apis and Spiroplasma melliferum in bees, J Invertebr Pathol, vol.109, pp.172-176, 2012.

A. Blanchard and C. M. Bébéar, Mycoplasmas of humans, Molecular biology and pathogenicity of mycoplasmas, pp.45-71, 2002.
DOI : 10.1007/0-306-47606-1_3

C. Mouches, J. M. Bové, J. G. Tully, D. L. Rose, R. E. Mccoy et al., Spiroplasma apis, a new species from the honey-bee Apis mellifera, Ann Microbiol (Paris), vol.134, pp.383-97, 1983.

R. S. Schwarz, É. W. Teixeira, J. P. Tauber, J. M. Birke, M. F. Martins et al., Honey bee colonies act as reservoirs for two Spiroplasma facultative symbionts and incur complex, multiyear infection dynamics. MicrobiologyOpen, vol.3, pp.341-55, 2014.
DOI : 10.1002/mbo3.172

URL : https://onlinelibrary.wiley.com/doi/pdf/10.1002/mbo3.172

N. J. Mueller, G. M. Tini, A. Weber, A. Gaspert, L. Husmann et al., Hepatitis from Spiroplasma sp. in an immunocompromised patient, Am J Transplant, vol.15, pp.2511-2517, 2015.

B. Lorenz, J. Schroeder, and U. Reischl, First evidence of an endogenous Spiroplasma sp. infection in humans manifesting as unilateral cataract associated with anterior uveitis in a premature baby, Graefes Arch Clin Exp Ophthalmol, vol.240, pp.348-53, 2002.

A. Aquilino, M. Masiá, P. López, A. J. Galiana, J. Tovar et al., First human systemic infection caused by Spiroplasma, J Clin Microbiol, vol.53, pp.719-740, 2015.
DOI : 10.1128/jcm.02841-14

URL : http://europepmc.org/articles/pmc4298541?pdf=render