Chromatin replication and epigenome maintenance, Nat. Rev. Mol. Cell Biol, vol.13, pp.153-167, 2012. ,
Transcriptional corepressor TLE1 functions with Runx2 in epigenetic repression of ribosomal RNA genes, Proc. Natl. Acad. Sci. USA, vol.107, pp.4165-4169, 2010. ,
RING1A and BMI1 bookmark active genes via ubiquitination of chromatin-associated proteins, Nucleic Acids Res, vol.44, pp.2136-2144, 2016. ,
An operational definition of epigenetics, Genes Dev, vol.23, pp.781-783, 2009. ,
Chromatin proteins and RNA are associated with DNA during all phases of mitosis, 2016. ,
A reconfigured pattern of MLL occupancy within mitotic chromatin promotes rapid transcriptional reactivation following mitotic exit, Mol. Cell, vol.36, pp.970-983, 2009. ,
Establishment and maintenance of heritable chromatin structure during early Drosophila embryogenesis, 2016. ,
3D-CLEM reveals that a major portion of mitotic chromosomes is not chromatin, Mol. Cell, vol.64, pp.790-802, 2016. ,
Methyl CpG-binding proteins induce largescale chromatin reorganization during terminal differentiation, J. Cell Biol, vol.169, pp.733-743, 2005. ,
The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing, J. Cell Biol, vol.141, pp.469-481, 1998. ,
CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin, EMBO J, vol.24, pp.3291-3300, 2005. ,
Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes, Genes Dev, vol.27, pp.251-260, 2013. ,
Choosing cell fate through a dynamic cell cycle, Curr. Stem Cell Rep, vol.1, pp.129-138, 2015. ,
TBP dynamics in living human cells: constitutive association of TBP with mitotic chromosomes, Mol. Biol. Cell, vol.13, pp.276-284, 2002. ,
Condensed mitotic chromatin is accessible to transcription factors and chromatin structural proteins, J. Cell Biol, vol.168, pp.41-54, 2005. ,
Dynamics of human DNA topoisomerases IIalpha and IIbeta in living cells, J. Cell Biol, vol.157, pp.31-44, 2002. ,
Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo, Nat. Cell Biol, vol.4, pp.79-82, 2002. ,
Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5, Nature, vol.364, pp.412-420, 1993. ,
Different sensitivity of DNA in situ in interphase and metaphase chromatin to heat denaturation, J. Cell Biol, vol.73, pp.128-138, 1977. ,
Interphase and metaphase chromatin. Different stainability of DNA with acridine orange after treatment at low pH, Exp. Cell Res, vol.110, pp.201-214, 1977. ,
Resetting a functional G1 nucleus after mitosis, Chromosoma, vol.125, pp.607-619, 2016. ,
Repo-Man/PP1 regulates heterochromatin formation in interphase, Nat. Commun, vol.8, 2017. ,
Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture, Epigenetics Chromatin, vol.7, p.25, 2014. ,
A role for mitotic bookmarking of SOX2 in pluripotency and differentiation, Genes Dev, vol.30, pp.2538-2550, 2016. ,
The elusive role of mitotic bookmarking in transcriptional regulation: insights from Sox2, Cell Cycle, vol.16, pp.601-606, 2017. ,
The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis, Proc. Natl. Acad. Sci. USA, vol.100, pp.8758-8763, 2003. ,
Brd4 marks select genes on mitotic chromatin and directs postmitotic transcription, Mol. Biol. Cell, vol.20, pp.4899-4909, 2009. ,
A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domains, Genes Dev, vol.16, pp.2985-2990, 2002. ,
Multiple structural maintenance of chromosome complexes at transcriptional regulatory elements, Stem Cell Rep, vol.1, pp.371-378, 2013. ,
, , 2004.
, Replication-independent chromatin loading of Dnmt1 during G2 and M phases, EMBO Rep, vol.5, pp.1181-1186
Developmental reprogramming after chromosome transfer into mitotic mouse zygotes, Nature, vol.447, pp.679-685, 2007. ,
Mediators of reprogramming: transcription factors and transitions through mitosis, Nature Rev. Mol. Cell Biol, vol.9, pp.505-516, 2008. ,
TFIIIB is phosphorylated, disrupted and selectively released from tRNA promoters during mitosis in vivo, EMBO J, vol.22, pp.5841-5850, 2003. ,
Transcriptional memory in the drosophila embryo, Curr. Biol, vol.26, pp.212-218, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-02187328
Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network, Nat. Cell Biol, vol.18, pp.1139-1148, 2016. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01972743
The epigenetic paradox of pluripotent ES cells, J. Mol. Biol, vol.429, pp.1476-1506, 2016. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02024847
Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation, Nature, vol.438, pp.1116-1122, 2005. ,
A polycomb group protein is retained at specific sites on chromatin in mitosis, PLoS Genet, vol.8, p.1003135, 2012. ,
In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells, Genes Dev, vol.26, pp.857-871, 2012. ,
Active genes are sensitive to deoxyribonuclease I during metaphase, Science, vol.217, pp.648-650, 1982. ,
, , 2006.
, Condensin I stabilizes chromosomes mechanically through a dynamic interaction in live cells, Curr. Biol, vol.16, pp.333-344
Changes in the organization of the genome during the mammalian cell cycle, Genome Biol, vol.14, p.142, 2013. ,
Mitotic repression of the transcriptional machinery, Trends Biochem. Sci, vol.22, pp.197-202, 1997. ,
Genome-wide studies reveal that H3K4me3 modification in bivalent genes is dynamically regulated during the pluripotent cell cycle and stabilized upon differentiation, Mol. Cell. Biol, vol.36, pp.615-627, 2015. ,
A model of myogenesis in vivo, derived from detailed autoradiographic studies of regenerating skeletal muscle, challenges the concept of quantal mitosis, Cell Tissue Res, vol.250, pp.563-569, 1987. ,
Mitosis gives a brief window of opportunity for a change in gene transcription, PLoS Biol, vol.12, 2014. ,
Epigenetics, cellular memory and gene regulation, Curr. Biol, vol.26, pp.644-648, 2016. ,
Chromosome dynamics during mitosis. Cold Spring Harbor Perspect, Biol, vol.7, p.15792, 2015. ,
Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin, Nature, vol.438, pp.1176-1180, 2005. ,
The cell cycle, cell lineages, and cell differentiation, Curr. Top. Dev. Biol, vol.7, pp.229-256, 1972. ,
H3K4 methylation-dependent memory of somatic cell identity inhibits reprogramming and development of nuclear transfer embryos, Cell Stem Cell, vol.21, pp.135-143, 2017. ,
, , 2015.
, Genome accessibility is widely preserved and locally modulated during mitosis, Genome Res, vol.25, pp.213-225
A hyperactive transcriptional state marks genome reactivation at the mitosis-G1 transition, Genes Dev, vol.30, pp.1423-1439, 2016. ,
DNA segments sensitive to single-strand-specific nucleases are present in chromatin of mitotic cells, Exp. Cell Res, vol.227, pp.197-202, 1996. ,
Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1, Cell, vol.150, pp.725-737, 2012. ,
H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes, Mol. Cell, vol.39, pp.901-911, 2010. ,
Chromatin fine structure of the c-MYC insulator element/DNase I-hypersensitive site I is not preserved during mitosis, Proc. Natl. Acad. Sci. USA, vol.104, pp.15741-15746, 2007. ,
Characterization of human UTF1, a chromatin-associated protein with repressor activity expressed in pluripotent cells, Stem Cell Res, vol.2, pp.211-218, 2009. ,
Regulation of global acetylation in mitosis through loss of histone acetyltransferases and deacetylases from chromatin, J. Biol. Chem, vol.276, pp.38307-38319, 2001. ,
RBPJ, the major transcriptional effector of Notch signaling, remains associated with chromatin throughout mitosis, suggesting a role in mitotic bookmarking, PLoS Genet, vol.10, 2014. ,
Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing, Proc. Natl. Acad. Sci. USA, vol.108, pp.2801-2806, 2011. ,
Human mutations affect the epigenetic/ bookmarking function of HNF1B, Nucleic Acids Res, vol.44, pp.8097-8111, 2016. ,
URL : https://hal.archives-ouvertes.fr/inserm-01361850
Histone release during transcription: displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress, Biochemistry, vol.44, pp.5357-5372, 2005. ,
Cell cycle-regulated expression of the muscle determination factor Myf5 in proliferating myoblasts, J. Cell Biol, vol.140, pp.111-118, 1998. ,
Mitotic transcription installs Sgo1 at centromeres to coordinate chromosome segregation, Mol. Cell, vol.59, pp.426-436, 2015. ,
Widespread mitotic bookmarking by histone marks and transcription factors in pluripotent stem cells, Cell Rep, vol.19, pp.1283-1293, 2017. ,
Quantitative analysis of chromatin compaction in living cells using FLIM-FRET, J. Cell Biol, vol.187, pp.481-496, 2009. ,
How the cell cycle impacts chromatin architecture and influences cell fate, Front. Genet, vol.6, p.19, 2015. ,
Packaging the genome: the structure of mitotic chromosomes, J. Biochem, vol.143, pp.145-153, 2008. ,
Displacement of sequence-specific transcription factors from mitotic chromatin, Cell, vol.83, pp.29-38, 1995. ,
The relationship between histone H3 phosphorylation and acetylation throughout the mammalian cell cycle, Biochem. Cell Biol, vol.84, pp.640-657, 2006. ,
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology, Nat. Rev. Genet, vol.15, pp.709-721, 2014. ,
Marking of active genes on mitotic chromosomes, Nature, vol.388, pp.895-899, 1997. ,
Organization of the mitotic chromosome, Science, vol.342, pp.948-953, 2013. ,
Activation of JNK triggers release of Brd4 from mitotic chromosomes and mediates protection from drug-induced mitotic stress, PLoS ONE, vol.7, p.34719, 2012. ,
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization, Cell, vol.169, pp.930-944, 2017. ,
The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics, Cell, vol.142, pp.810-821, 2010. ,
Association of chromatin proteins high mobility group box (HMGB) 1 and HMGB2 with mitotic chromosomes, Mol. Biol. Cell, vol.14, pp.3414-3426, 2003. ,
Mitotic transcription and waves of gene reactivation during mitotic exit, Science USA, 2017. ,
Live cell imaging of the cancer-related transcription factor RUNX2 during mitotic progression, J. Cell. Physiol, vol.226, pp.1383-1389, 2011. ,
Synthesis of RNA and protein during mitosis in mammalian tissue culture cells, Exp. Cell Res, vol.26, pp.260-268, 1962. ,
Epigenetics: core misconcept, Proc. Natl. Acad. Sci. USA, vol.110, pp.7101-7103, 2013. ,
Mitotic phosphorylation of SOX2 mediated by Aurora kinase A is critical for the stem-cell like cell maintenance in PA-1 cells, Cell Cycle, vol.15, 2009. ,
The Drosophila GAGA transcription factor is associated with specific regions of heterochromatin throughout the cell cycle, EMBO J, vol.13, pp.5977-5983, 1994. ,
Stability and flexibility of epigenetic gene regulation in mammalian development, Nature, vol.447, pp.425-432, 2007. ,
Global mitotic phosphorylation of C2H2 zinc finger protein linker peptides, Cell Cycle, vol.10, pp.3327-3336, 2011. ,
Sox2 and Oct-3/4: a versatile pair of master regulators that orchestrate the self-renewal and pluripotency of embryonic stem cells, Wiley Interdiscip. Rev. Syst. Biol. Med, vol.1, pp.228-236, 2009. ,
Histone H3 phosphorylation-a versatile chromatin modification for different occasions, Biochimie, vol.94, pp.2193-2201, 2012. ,
A temporal threshold for formaldehyde crosslinking and fixation, PLoS ONE, vol.4, p.4636, 2009. ,
Mitotic regulation of TFIID: inhibition of activator-dependent transcription and changes in subcellular localization, Genes Dev, vol.10, pp.2389-2400, 1996. ,
Mitotic phosphorylation of CCCTC-binding factor (CTCF) reduces its DNA binding activity, FEBS Open Bio, vol.7, pp.397-404, 2017. ,
A possible role of Drosophila CTCF in mitotic bookmarking and maintaining chromatin domains during the cell cycle, Biol. Res, vol.48, p.27, 2015. ,
Aurkb/PP1-mediated resetting of Oct4 during the cell cycle determines the identity of embryonic stem cells, p.10877, 2016. ,
Mitotic inactivation of a human SWI/SNF chromatin remodeling complex, Genes Dev, vol.12, pp.2842-2851, 1998. ,
Molecular features of cellular reprogramming and development, Nat. Rev. Mol. Cell Biol, vol.17, pp.139-154, 2016. ,
Cycling through developmental decisions: how cell cycle dynamics control pluripotency, differentiation and reprogramming, Development, vol.143, pp.4301-4311, 2016. ,
Transcription factors: from enhancer binding to developmental control, Nat. Rev. Genet, vol.13, pp.613-626, 2012. ,
Annotating nucleic acid-binding function based on protein structure, J. Mol. Biol, vol.326, pp.1065-1079, 2003. ,
DOI : 10.1016/s0022-2836(03)00031-7
What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory, Nat. Rev. Mol. Cell Biol, vol.15, pp.340-356, 2014. ,
DOI : 10.1038/nrm3789
, , 2016.
, Genome-wide footprinting: ready for prime time?, Nat. Methods, vol.13, pp.222-228
Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation, Nat. Commun, vol.6, p.7815, 2015. ,
DOI : 10.1038/ncomms8815
URL : https://www.nature.com/articles/ncomms8815.pdf
Rapid exchange of mammalian topoisomerase II alpha at kinetochores and chromosome arms in mitosis, J. Cell Biol, vol.158, pp.23-29, 2002. ,
A dynamic mode of mitotic bookmarking by transcription factors, p.22280, 2016. ,
Temporal and spatial localization of novel nuclear protein NP95 in mitotic and meiotic cells, Cell Struct. Funct, vol.25, pp.149-159, 2000. ,
Mitotic chromosome condensation in vertebrates, Exp. Cell Res, vol.318, pp.1435-1441, 2012. ,
DOI : 10.1016/j.yexcr.2012.03.017
SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosis, Genes Dev, vol.20, pp.1256-1261, 2006. ,
A phospho/methyl switch at histone H3 regulates TFIID association with mitotic chromosomes, EMBO J, vol.29, pp.3967-3978, 2010. ,
DOI : 10.1038/emboj.2010.261
URL : http://emboj.embopress.org/content/embojnl/29/23/3967.full.pdf
A mitotic transcriptional switch in polycystic kidney disease, Nat. Med, vol.16, pp.106-110, 2010. ,
DOI : 10.1038/nm.2068
URL : http://europepmc.org/articles/pmc3062536?pdf=render
Chromatin-association of the Polycomb group protein BMI1 is cell cycle-regulated and correlates with its phosphorylation status, J. Cell Sci, vol.112, pp.4627-4639, 1999. ,
MAPKAP kinase 3pK phosphorylates and regulates chromatin association of the polycomb group protein Bmi1, J. Biol. Chem, vol.280, pp.5178-5187, 2005. ,
Histone modifications and mitosis: countermarks, landmarks, and bookmarks, Trends Cell Biol, vol.23, pp.175-184, 2013. ,
DOI : 10.1016/j.tcb.2012.11.005
DNA sequence-dependent epigenetic inheritance of gene silencing and histone H3K9 methylation, Science, vol.356, pp.88-91, 2017. ,
DOI : 10.1126/science.aaj2114
URL : https://science.sciencemag.org/content/sci/356/6333/88.full.pdf
A cascade of histone modifications induces chromatin condensation in mitosis, Science, vol.343, pp.77-80, 2014. ,
Promoter-bound p300 complexes facilitate post-mitotic transmission of transcriptional memory, PLoS ONE, vol.9, p.99989, 2014. ,
Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation, Genome Res, vol.21, pp.718-724, 2011. ,
Mechanism of hsp70i gene bookmarking, Science, vol.307, pp.421-423, 2005. ,
DOI : 10.1126/science.1106478
The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action, Nat. Cell Biol, vol.10, pp.1318-1323, 2008. ,
Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells, Nat. Genet, vol.49, pp.377-386, 2017. ,
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites, Cell, vol.154, pp.801-813, 2013. ,
Brd4 recruits P-TEFb to chromosomes at late mitosis to promote G1 gene expression and cell cycle progression, Mol. Cell. Biol, vol.28, pp.967-976, 2008. ,
A subset of Drosophila Myc sites remain associated with mitotic chromosomes colocalized with insulator proteins, Nat. Commun, vol.4, p.1464, 2013. ,
Foxl1 inhibits tumor invasion and predicts outcome in human renal cancer, Intl. J. Clin. Exp. Pathol, vol.7, pp.110-122, 2014. ,
CHD4 is a RanGTP-dependent MAP that stabilizes microtubules and regulates bipolar spindle formation, Curr. Biol, vol.23, pp.2443-2451, 2013. ,
Mitotic retention of gene expression patterns by the cell fate-determining transcription factor Runx2, Proc. Natl. Acad. Sci. USA, vol.104, pp.3189-3194, 2007. ,
Mitotic partitioning and selective reorganization of tissue-specific transcription factors in progeny cells, Proc. Natl. Acad. Sci. USA, vol.100, pp.14852-14857, 2003. ,
Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation, Nat. Cell Biol, vol.13, pp.1295-1304, 2011. ,