A. S. Lynch and G. T. Robertson, Bacterial and fungal biofilm infections, Annu. Rev. Med, vol.59, pp.415-428, 2008.

J. B. Kaplan, Biofilm dispersal: mechanisms, clinical implications, and potential therapeutic uses, J. Dent. Res, vol.89, pp.205-218, 2010.

I. Kolodkin-gal, D-Amino acids trigger biofilm disassembly, Science, vol.328, pp.627-629, 2010.

P. D. Fey, Modality of bacterial growth presents unique targets: how do we treat biofilm-mediated infections?, Curr. Opin. Microbiol, vol.13, pp.610-615, 2010.

J. Njoroge and V. Sperandio, Jamming bacterial communication: new approaches for the treatment of infectious diseases, EMBO Mol. Med, vol.1, pp.201-210, 2009.

R. M. Donlan, Preventing biofilms of clinically relevant organisms using bacteriophage, Trends Microbiol, vol.17, pp.66-72, 2009.

D. Kadouri and G. A. O'toole, Susceptibility of biofilms to Bdellovibrio bacteriovorus attack, Appl. Environ. Microbiol, vol.71, pp.4044-4051, 2005.

P. N. Danese, Antibiofilm approaches: prevention of catheter colonization, Chem. Biol, vol.9, pp.873-880, 2002.

I. Francolini and G. Donelli, Prevention and control of biofilm-based medical-device-related infections, FEMS Immunol. Med. Microbiol, vol.59, pp.227-238, 2010.

K. Vasilev, J. Cook, and H. J. Griesser, Antibacterial surfaces for biomedical devices, Expert Rev. Med. Devices, vol.6, pp.553-567, 2009.

A. K. Mukherjee and K. Das, Microbial surfactants and their potential applications: an overview, Adv. Exp. Med. Biol, vol.672, pp.54-64, 2010.

M. E. Davey, N. C. Caiazza, and G. A. O'toole, Rhamnolipid surfactant production affects biofilm architecture in Pseudomonas aeruginosa PAO1, J. Bacteriol, vol.185, pp.1027-1036, 2003.

G. S. Kiran, B. Sabarathnam, and J. Selvin, Biofilm disruption potential of a glycolipid biosurfactant from marine Brevibacterium casei, FEMS Immunol. Med. Microbiol, vol.59, pp.432-438, 2010.

J. Valle, Broad-spectrum biofilm inhibition by a secreted bacterial polysaccharide, Proc. Natl. Acad. Sci. U. S. A, vol.103, pp.12558-12563, 2006.

I. M. Banat, Microbial biosurfactants production, applications and future potential, Appl. Microbiol. Biotechnol, vol.87, pp.427-444, 2010.

J. Valle, The amino acid valine is secreted in continuous-flow bacterial biofilms, J. Bacteriol, vol.190, pp.264-274, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00195548

M. Whiteley, Gene expression in Pseudomonas aeruginosa biofilms, Nature, vol.413, pp.860-864, 2001.

M. E. Hibbing, C. Fuqua, M. R. Parsek, and S. B. Peterson, Bacterial competition: surviving and thriving in the microbial jungle, Nat. Rev. Microbiol, vol.8, pp.15-25, 2010.

M. Gross, S. E. Cramton, F. Götz, and A. Peschel, Key role of teichoic acid net charge in Staphylococcus aureus colonization of artificial surfaces, Infect. Immun, vol.69, pp.3423-3426, 2001.

D. Mack, N. Siemssen, and R. Laufs, Parallel induction by glucose of adherence and a polysaccharide antigen specific for plastic-adherent Staphylococcus epidermidis: evidence for functional relation to intercellular adhesion, Infect. Immun, vol.60, pp.2048-2057, 1992.

C. Whitfield, Biosynthesis and assembly of capsular polysaccharides in Escherichia coli, Annu. Rev. Biochem, vol.75, pp.39-68, 2006.

A. Rahn and C. Whitfield, Transcriptional organization and regulation of the Escherichia coli K30 group 1 capsule biosynthesis (cps) gene cluster, Mol. Microbiol, vol.47, pp.1045-1060, 2003.

C. Beloin, The transcriptional antiterminator RfaH represses biofilm formation in Escherichia coli, J. Bacteriol, vol.188, pp.1316-1331, 2006.
URL : https://hal.archives-ouvertes.fr/pasteur-01372312

C. Beloin, Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression, Mol. Microbiol, vol.51, pp.659-674, 2004.
URL : https://hal.archives-ouvertes.fr/pasteur-02080937

C. D. Ciornei, Biofilm-forming Pseudomonas aeruginosa bacteria undergo lipopolysaccharide structural modifications and induce enhanced inflammatory cytokine response in human monocytes. Innate Immun, vol.16, pp.288-301, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00414282

H. C. Flemming and J. Wingender, The biofilm matrix, Nat. Rev. Microbiol, vol.8, pp.623-633, 2010.

I. Sutherland, Biofilm exopolysaccharides: a strong and sticky framework, Microbiology, vol.147, pp.3-9, 2001.

D. Corbett and I. Roberts, Capsular polysaccharides in Escherichia coli, Adv. Appl. Microbiol, vol.65, pp.1-26, 2008.

R. Milkman, E. Jaeger, and R. D. Mcbride, Molecular evolution of the Escherichia coli chromosome. VI. Two regions of high effective recombination, Genetics, vol.163, pp.475-483, 2003.

M. Touchon, Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths, PLoS Genet, vol.5, p.1000344, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00390293

T. Sugiyama, Generation of Escherichia coli O9a serotype, a subtype of E. coli O9, by transfer of the wb* gene cluster of Klebsiella O3 into E. coli via recombination, J. Bacteriol, vol.180, pp.2775-2778, 1998.

S. Da-re and J. M. Ghigo, A CsgD-independent pathway for cellulose production and biofilm formation in Escherichia coli, J. Bacteriol, vol.188, pp.3073-3087, 2006.

W. D. Grant, I. W. Sutherland, and J. F. Wilkinson, Exopolysaccharide colanic acid and its occurrence in the Enterobacteriaceae, J. Bacteriol, vol.100, pp.1187-1193, 1969.

K. Tait and I. W. Sutherland, Antagonistic interactions amongst bacteriocin-producing enteric bacteria in dual species biofilms, J. Appl. Microbiol, vol.93, pp.345-352, 2002.

C. Robinson, B. Bohannan, and Y. V. , From structure to function: the ecology of host-associated microbial communities. Microbiol, Mol. Biol. Rev, vol.74, p.453, 2010.

C. J. Van-oss, Energetics of cell-cell and cell-biopolymer interactions, Cell Biophys, vol.14, pp.1-16, 1989.

P. Escobar-paramo, A specific genetic background is required for acquisition and expression of virulence factors in Escherichia coli, Mol. Biol. Evol, vol.21, pp.1085-1094, 2004.

P. Escobar-páramo, Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates, Environ. Microbiol, vol.8, pp.1975-1984, 2006.

B. Picard, The link between phylogeny and virulence in Escherichia coli extraintestinal infection, Infect. Immun, vol.67, pp.546-553, 1999.

D. Skurnik, Effect of human vicinity on antimicrobial resistance and integrons in animal faecal Escherichia coli, J. Antimicrob. Chemother, vol.57, pp.1215-1219, 2006.

M. K. Chaveroche, J. M. Ghigo, and C. Enfert, A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans, Nucleic Acids Res, vol.28, p.97, 2000.

A. Derbise, B. Lesic, D. Dacheux, J. M. Ghigo, and E. Carniel, A rapid and simple method for inactivating chromosomal genes in Yersinia, FEMS Immunol. Med. Microbiol, vol.38, pp.113-116, 2003.

J. H. Miller, A short course in bacterial genetics: a laboratory manual and handbook for Escherichia coli and related bacteria, 1992.