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Journal articles
Establishment of the European meningococcal strain collection genome library (EMSC-GL) for the 2011 to 2012 epidemiological year.
Abstract : Invasive meningococcal disease surveillance in Europe combines isolate characterisation and epidemiological data to support public health intervention. A representative European Meningococcal Strain Collection (EMSC) of IMD isolates was obtained, and whole genome sequenced to characterise 799 EMSC isolates from the epidemiological year July 2011-June 2012. To establish a genome library (GL), the isolate information was deposited in the pubMLST.org/neisseria database. Genomes were curated and annotated at 2,429 meningococcal loci, including those defining clonal complex, capsule, antigens, and antimicrobial resistance. Most genomes contained genes encoding B (n = 525; 65.7%) or C (n = 163; 20.4%) capsules; isolates were genetically highly diverse, with >20 genomic lineages, five of which comprising 60.7% (n = 485) of isolates. There were >350 antigenic fine-types: 307 were present once, the most frequent (P1.7-2,4:F5-1) comprised 8% (n = 64) of isolates. Each genome was characterised for Bexsero Antigen Sequence Typing (BAST): 25.5% (n = 204) of isolates contained alleles encoding the fHbp and/or the PorA VR1 vaccine component, but most genomes (n = 513; 64.2%) did not contain the NadA component. EMSC-GL will support an integrated surveillance of disease-associated genotypes in Europe, enabling the monitoring of hyperinvasive lineages, outbreak identification, and supporting vaccine programme implementation.
Cited literature [40 references]
https://hal-pasteur.archives-ouvertes.fr/pasteur-02013211
Contributor : Muhamed-Kheir Taha Connect in order to contact the contributor
Submitted on : Sunday, February 10, 2019 - 5:03:28 PM
Last modification on : Wednesday, November 3, 2021 - 4:54:31 AM
Long-term archiving on: : Saturday, May 11, 2019 - 12:35:59 PM
Contributor : Muhamed-Kheir Taha Connect in order to contact the contributor
Submitted on : Sunday, February 10, 2019 - 5:03:28 PM
Last modification on : Wednesday, November 3, 2021 - 4:54:31 AM
Long-term archiving on: : Saturday, May 11, 2019 - 12:35:59 PM
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eurosurv-23-20-3.pdf
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