M. Coetzee, M. Craig, and D. Le-sueur, Distribution of African malaria mosquitoes belonging to the Anopheles gambiae complex, Parasitology today, vol.16, issue.2, p.10652493, 2000.

Y. A. Derua, M. Alifrangis, K. M. Hosea, D. W. Meyrowitsch, S. M. Magesa et al., Change in composition of the Anopheles gambiae complex and its possible implications for the transmission of malaria and lymphatic filariasis in north-eastern Tanzania, Malaria journal, vol.11, p.3469399, 2012.

W. Takken and N. O. Verhulst, Host preferences of blood-feeding mosquitoes, Annual review of entomology, vol.58, pp.433-53, 2013.

M. M. Riehle, K. Markianos, O. Niare, J. Xu, J. Li et al., Natural malaria infection in Anopheles gambiae is regulated by a single genomic control region, Science, vol.312, issue.5773, pp.577-586, 2006.

A. K. Githeko, M. W. Service, C. M. Mbogo, and F. K. Atieli, Resting behaviour, ecology and genetics of malaria vectors in large scale agricultural areas of Western Kenya, Parassitologia, vol.38, issue.3, p.9257337, 1996.

M. Coluzzi, A. Sabatini, A. Della-torre, D. Deco, M. A. Petrarca et al., A polytene chromosome analysis of the Anopheles gambiae species complex, Science, vol.298, issue.5597, pp.1415-1423, 2002.

M. Coluzzi, A. Sabatini, V. Petrarca, A. D. Deco, and M. , Behavioural divergences between mosquitoes with different inversion karyotypes in polymorphic populations of the Anopheles gambiae complex, Nature, vol.266, issue.5605, p.865604, 1977.

M. Coluzzi, A. Sabatini, V. Petrarca, D. Deco, and M. A. , Chromosomal differentiation and adaptation to human environments in the Anopheles gambiae complex, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.73, issue.5, p.394408, 1979.

G. Gimonneau, M. Pombi, M. Choisy, S. Morand, R. K. Dabire et al., Larval habitat segregation between the molecular forms of the mosquito Anopheles gambiae in a rice field area of Burkina Faso, West Africa. Medical and veterinary entomology, vol.26, p.3140611, 2012.

Y. Lee, A. J. Cornel, C. R. Meneses, A. Fofana, A. G. Andrianarivo et al., Ecological and genetic relationships of the Forest-M form among chromosomal and molecular forms of the malaria vector Anopheles gambiae sensu stricto, Malaria journal, vol.8, p.2680901, 2009.

M. A. Slotman, F. Tripet, A. J. Cornel, C. R. Meneses, Y. Lee et al., Evidence for subdivision within the M molecular form of Anopheles gambiae. Molecular ecology, vol.16, pp.639-688, 2007.

C. Wondji, F. Simard, and D. Fontenille, Evidence for genetic differentiation between the molecular forms M and S within the Forest chromosomal form of Anopheles gambiae in an area of sympatry, Insect Mol Biol, vol.11, issue.1, p.11841498, 2002.

M. Coetzee, R. H. Hunt, R. Wilkerson, D. Torre, A. Coulibaly et al., Anopheles coluzzii and Anopheles amharicus, new members of the Anopheles gambiae complex, Zootaxa, vol.3619, issue.3, pp.246-74, 2013.

M. M. Riehle, W. M. Guelbeogo, A. Gneme, K. Eiglmeier, I. Holm et al., A cryptic subgroup of Anopheles gambiae is highly susceptible to human malaria parasites, Science, vol.331, issue.6017, p.3065189, 2011.
URL : https://hal.archives-ouvertes.fr/pasteur-01971785

R. Wang-sattler, S. Blandin, Y. Ning, C. Blass, G. Dolo et al., Mosaic genome architecture of the Anopheles gambiae species complex, PloS one, vol.2, issue.11, p.2082662, 2007.

T. L. Turner and M. W. Hahn, Genomic islands of speciation or genomic islands and speciation? Molecular ecology, vol.19, pp.848-50, 2010.

T. L. Turner, M. W. Hahn, and S. V. Nuzhdin, Genomic islands of speciation in Anopheles gambiae, PLoS biology, vol.3, issue.9, p.1182689, 2005.

D. Weetman, C. S. Wilding, K. Steen, J. C. Morgan, F. Simard et al., Association mapping of insecticide resistance in wild Anopheles gambiae populations: major variants identified in a low-linkage disequilbrium genome, PloS one, vol.5, issue.10, p.2956759, 2010.

T. E. Cruickshank and M. W. Hahn, Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow, Molecular ecology, vol.23, issue.13, pp.3133-57, 2014.

D. Weetman, C. S. Wilding, K. Steen, J. Pinto, and M. J. Donnelly, Gene flow-dependent genomic divergence between Anopheles gambiae M and S forms, vol.29, p.3259608, 2012.

C. Costantini, D. Ayala, W. M. Guelbeogo, M. Pombi, C. Y. Some et al., Living at the edge: biogeographic patterns of habitat segregation conform to speciation by niche expansion in Anopheles gambiae, BMC ecology, vol.9, p.2702294, 2009.

A. Della-torre, Z. Tu, and V. Petrarca, On the distribution and genetic differentiation of Anopheles gambiae s. s. molecular forms. Insect biochemistry and molecular biology, vol.35, pp.755-69, 2005.

F. Simard, D. Ayala, G. C. Kamdem, M. Pombi, J. Etouna et al., Ecological niche partitioning between Anopheles gambiae molecular forms in Cameroon: the ecological side of speciation, BMC ecology, vol.9, p.2698860, 2009.

F. Santolamazza, M. Calzetta, J. Etang, E. Barrese, D. I. Caccone et al., Distribution of knock-down resistance mutations in Anopheles gambiae molecular forms in west and west-central Africa, Malaria journal, vol.7, p.2405802, 2008.

B. Caputo, F. Santolamazza, J. L. Vicente, D. C. Nwakanma, M. Jawara et al., The "far-west" of Anopheles gambiae molecular forms, PloS one, vol.6, issue.2, p.3039643, 2011.

C. D. Marsden, Y. Lee, C. C. Nieman, M. R. Sanford, J. Dinis et al., Asymmetric introgression between the M and S forms of the malaria vector, Anopheles gambiae, maintains divergence despite extensive hybridization, Molecular ecology, vol.20, issue.23, p.3222736, 2011.

D. C. Nwakanma, D. E. Neafsey, M. Jawara, M. Adiamoh, E. Lund et al., Breakdown in the process of incipient speciation in Anopheles gambiae, Genetics, vol.193, issue.4, p.3606099, 2013.

Y. Lee, C. D. Marsden, L. C. Norris, T. C. Collier, B. J. Main et al., Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America, vol.110, p.3856788, 2013.

M. C. Fontaine, J. B. Pease, A. Steele, R. M. Waterhouse, D. E. Neafsey et al., Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics, Science, vol.347, issue.6217, p.4380269, 2015.

T. Lehmann, M. Licht, N. Elissa, B. T. Maega, J. M. Chimumbwa et al., Population Structure of Anopheles gambiae in Africa, The Journal of heredity, vol.94, issue.2, p.12721225, 2003.

J. Pinto, A. Egyir-yawson, J. Vicente, B. Gomes, F. Santolamazza et al., Geographic population structure of the African malaria vector Anopheles gambiae suggests a role for the forest-savannah biome transition as a barrier to gene flow, Evolutionary applications, vol.6, issue.6, p.3779092, 2013.

D. E. Neafsey, M. K. Lawniczak, D. J. Park, S. N. Redmond, M. B. Coulibaly et al., SNP genotyping defines complex gene-flow boundaries among African malaria vector mosquitoes, Science, vol.330, issue.6003, pp.514-521, 2010.
DOI : 10.1126/science.1193036

URL : http://europepmc.org/articles/pmc4811326?pdf=render

B. J. White, F. Santolamazza, L. Kamau, M. Pombi, O. Grushko et al., Molecular karyotyping of the 2La inversion in Anopheles gambiae, Am J Trop Med Hyg, vol.76, issue.2, p.17297045, 2007.

D. Martinez-torres, F. Chandre, M. S. Williamson, F. Darriet, J. B. Berge et al., Molecular characterization of pyrethroid knockdown resistance (kdr) in the major malaria vector Anopheles gambiae s.s, Insect Mol Biol, vol.7, issue.2, p.9535162, 1998.
URL : https://hal.archives-ouvertes.fr/halsde-00201819

A. Gneme, W. M. Guelbeogo, M. M. Riehle, A. Sanou, A. Traore et al., Equivalent susceptibility of Anopheles gambiae M and S molecular forms and Anopheles arabiensis to Plasmodium falciparum infection in Burkina Faso, Malaria journal, vol.12, p.3687573, 2013.
URL : https://hal.archives-ouvertes.fr/pasteur-00836054

R. T. Fryxell, C. C. Nieman, A. Fofana, Y. Lee, S. F. Traore et al., Differential Plasmodium falciparum infection of Anopheles gambiae s.s. molecular and chromosomal forms in Mali, Malaria journal, vol.11, p.3441388, 2012.

M. O. Ndiath, C. Brengues, L. Konate, C. Sokhna, C. Boudin et al., Dynamics of transmission of Plasmodium falciparum by Anopheles arabiensis and the molecular forms M and S of Anopheles gambiae in Dielmo, Senegal. Malaria journal, vol.7, p.2515330, 2008.

M. O. Ndiath, A. Cailleau, S. M. Diedhiou, G. A. Boudin, C. Richard et al., Effects of the kdr resistance mutation on the susceptibility of wild Anopheles gambiae populations to Plasmodium falciparum: a hindrance for vector control, Malaria journal, vol.13, issue.1, p.4159551, 2014.

C. Wondji, S. Frederic, V. Petrarca, J. Etang, F. Santolamazza et al., Species and populations of the Anopheles gambiae complex in Cameroon with special emphasis on chromosomal and molecular forms of Anopheles gambiae s.s, J Med Entomol, vol.42, issue.6, pp.998-1005, 2005.

E. Oliveira, P. Salgueiro, K. Palsson, J. L. Vicente, A. P. Arez et al., High levels of hybridization between molecular forms of Anopheles gambiae from Guinea Bissau, J Med Entomol, vol.45, issue.6, pp.1057-63, 2008.

B. J. White, M. W. Hahn, M. Pombi, B. J. Cassone, N. F. Lobo et al., Localization of candidate regions maintaining a common polymorphic inversion (2La) in Anopheles gambiae, PLoS genetics, vol.3, issue.12, p.2134946, 2007.

B. J. White, C. Cheng, F. Simard, C. Costantini, and N. J. Besansky, Genetic association of physically unlinked islands of genomic divergence in incipient species of Anopheles gambiae, Molecular ecology, vol.19, issue.5, p.3683534, 2010.

B. J. White, M. K. Lawniczak, C. Cheng, M. B. Coulibaly, M. D. Wilson et al., Adaptive divergence between incipient species of Anopheles gambiae increases resistance to Plasmodium, Proceedings of the National Academy of Sciences of the United States of America, vol.108, issue.1, p.3017163, 2011.

C. S. Clarkson, D. Weetman, J. Essandoh, A. E. Yawson, G. Maslen et al., Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation, Nature communications, vol.5, p.4086683, 2014.

A. L. Price, N. A. Zaitlen, D. Reich, and N. Patterson, New approaches to population stratification in genomewide association studies, Nat Rev Genet, vol.11, issue.7, pp.459-63, 2010.

P. Central and P. , , p.2975875

F. Tripet, Y. T. Toure, G. Dolo, and G. C. Lanzaro, Frequency of multiple inseminations in field-collected Anopheles gambiae females revealed by DNA analysis of transferred sperm, Am J Trop Med Hyg, vol.68, issue.1, pp.1-5, 2003.

A. Diabate, R. K. Dabire, N. Millogo, and T. Lehmann, Evaluating the effect of postmating isolation between molecular forms of Anopheles gambiae (Diptera: Culicidae), J Med Entomol, vol.44, issue.1, p.17294921, 2007.

C. Pennetier, B. Warren, K. R. Dabire, I. J. Russell, and G. Gibson, Singing on the wing" as a mechanism for species recognition in the malarial mosquito Anopheles gambiae, Curr Biol, vol.20, issue.2, pp.131-137, 2010.

M. R. Sanford, B. Demirci, C. D. Marsden, Y. Lee, A. J. Cornel et al., Morphological differentiation may mediate mate-choice between incipient species of Anopheles gambiae s.s. PloS one, vol.6, p.3221689, 2011.

C. Suwanchaichinda and M. R. Kanost, The serpin gene family in Anopheles gambiae, Gene, vol.442, issue.1-2, p.2716094, 2009.

S. Stathopoulos, D. E. Neafsey, M. K. Lawniczak, M. A. Muskavitch, and G. K. Christophides, Genetic dissection of Anopheles gambiae gut epithelial responses to Serratia marcescens, PLoS Pathog, vol.10, issue.3, p.3946313, 2014.

M. Povelones, L. M. Upton, K. A. Sala, and G. K. Christophides, Structure-function analysis of the Anopheles gambiae LRIM1/APL1C complex and its interaction with complement C3-like protein TEP1, PLoS Pathog, vol.7, issue.4, p.3077365, 2011.

G. K. Christophides, E. Zdobnov, C. Barillas-mury, E. Birney, S. Blandin et al., Immunity-related genes and gene families in Anopheles gambiae, Science, vol.298, issue.5591, pp.159-65, 2002.

J. E. Crawford, E. Bischoff, T. Garnier, A. Gneme, K. Eiglmeier et al., Evidence for population-specific positive selection on immune genes of Anopheles gambiae, G3, vol.2, issue.12, p.3516473, 2012.
URL : https://hal.archives-ouvertes.fr/pasteur-02008329

S. M. Rottschaefer, M. M. Riehle, B. Coulibaly, M. Sacko, O. Niare et al., Exceptional diversity, maintenance of polymorphism, and recent directional selection on the APL1 malaria resistance genes of Anopheles gambiae, PLoS biology, vol.9, issue.3, p.3050937, 2011.
URL : https://hal.archives-ouvertes.fr/pasteur-02008334

A. Della-torre, C. Fanello, M. Akogbeto, J. Dossou-yovo, G. Favia et al., Molecular evidence of incipient speciation within Anopheles gambiae s.s. in West Africa, Insect Mol Biol, vol.10, issue.1, pp.9-18, 2001.

A. Gneme, W. M. Guelbeogo, M. M. Riehle, A. B. Tiono, A. Diarra et al., Plasmodium species occurrence, temporal distribution and interaction in a child-aged population in rural Burkina Faso, Malaria journal, vol.12, 2013.
URL : https://hal.archives-ouvertes.fr/pasteur-00795360

P. Central and P. , , p.3583752

A. Cohuet, S. Krishnakumar, F. Simard, I. Morlais, A. Koutsos et al., SNP discovery and molecular evolution in Anopheles gambiae, with special emphasis on innate immune system, BMC genomics, vol.9, p.2405807, 2008.

V. L. Singer, L. J. Jones, S. T. Yue, and R. P. Haugland, Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation, Anal Biochem, vol.249, issue.2, pp.228-266, 1997.

O. Niare, K. Markianos, J. Volz, F. Oduol, A. Toure et al., Genetic loci affecting resistance to human malaria parasites in a West African mosquito vector population, Science, vol.298, issue.5591, p.12364806, 2002.

. Illumina and . Genomestudio, Genotyping Module User Guide (PDF document

R. A. Fisher, Statistical Methods for Research Workers, vol.356, 1954.