Common origins and host-dependent diversity of plant and animal viromes, Curr Opin Virol, vol.1, issue.5, pp.322-353, 2011. ,
Virus world as an evolutionary network of viruses and capsidless selfish elements, Microbiol Mol Biol Rev, vol.78, issue.2, pp.278-303, 2014. ,
Methods for virus classification and the challenge of incorporating metagenomic sequence data, J Gen Virol, 2014. ,
RNA-RNA recombination in plant virus replication and evolution, Annu Rev Phytopathol, vol.49, pp.415-458, 2011. ,
The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups, Nat Rev Microbiol, vol.6, issue.12, pp.925-964, 2008. ,
Structure unifies the viral universe, Annu Rev Biochem, vol.81, pp.795-822, 2012. ,
What does structure tell us about virus evolution?, Curr Opin Struct Biol, vol.15, issue.6, pp.655-63, 2005. ,
Cellular domains and viral lineages, Trends Microbiol, vol.22, issue.10, pp.554-562, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977393
Does the evolution of viral polymerases reflect the origin and evolution of viruses?, Nat Rev Microbiol, vol.7, issue.3, p.250, 2009. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977416
Redefining viruses: lessons from Mimivirus, Nat Rev Microbiol, vol.6, issue.4, pp.315-324, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00297223
Order to the viral universe, J Virol, vol.84, issue.24, pp.12476-12485, 2010. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977412
The complexity of the virus world, Nat Rev Microbiol, vol.7, p.250, 2009. ,
Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly, Curr Opin Virol, vol.1, issue.2, pp.118-142, 2011. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977407
Evolution of double-stranded RNA viruses: a case for polyphyletic origin from different groups of positive-stranded RNA viruses, Semin Virol, vol.3, pp.327-366, 1992. ,
Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences, Crit Rev Biochem Mol Biol, vol.28, issue.5, pp.375-430, 1993. ,
Evolutionary genomics of mycovirus-related dsRNA viruses reveals cross-family horizontal gene transfer and evolution of diverse viral lineages, BMC Evol Biol, vol.12, p.91, 2012. ,
The remarkable evolutionary history of endornaviruses, J Gen Virol, vol.92, pp.2674-2682, 2011. ,
Origin, adaptation and evolutionary pathways of fungal viruses, Virus Genes, vol.16, issue.1, pp.119-150, 1998. ,
A double-stranded RNA as the genome of a potential virus infecting Vicia faba, Virus Genes, vol.39, issue.1, pp.126-157, 2009. ,
Blueberry latent virus: an amalgam of the Partitiviridae and Totiviridae, Virus Res, vol.155, issue.1, pp.175-80, 2011. ,
A novel monopartite dsRNA virus from rhododendron, Arch Virol, vol.155, issue.11, pp.1859-63, 2010. ,
Southern tomato virus: the link between the families Totiviridae and Partitiviridae, Virus Res, vol.140, issue.1-2, pp.130-137, 2009. ,
, Virus taxonomy: classification and nomenclature of viruses: Ninth Report of the International Committee on Taxonomy of Viruses, pp.639-50, 2012.
, Virus taxonomy: classification and nomenclature of viruses: Ninth Report of the International Committee on Taxonomy of Viruses, pp.522-556, 2012.
Histochemical detection of Blueberry latent virus in highbush blueberry plant, J Gen Plant Pathol, vol.77, pp.304-310, 2011. ,
Protein homology detection by HMM-HMM comparison, Bioinformatics, vol.21, issue.7, pp.951-60, 2005. ,
Biology and molecular biology of viruses in the genus Tenuivirus, Annu Rev Phytopathol, vol.36, pp.139-63, 1998. ,
Negative-strand RNA viruses: the plant-infecting counterparts, Virus Res, vol.162, issue.1-2, pp.184-202, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00658370
The hexamer structure of Rift Valley fever virus nucleoprotein suggests a mechanism for its assembly into ribonucleoprotein complexes, PLoS Pathog, vol.7, issue.5, p.1002030, 2011. ,
Structure of severe fever with thrombocytopenia syndrome virus nucleocapsid protein in complex with suramin reveals therapeutic potential, J Virol, vol.87, issue.12, pp.6829-6868, 2013. ,
Phleboviruses encapsidate their genomes by sequestering RNA bases, Proc Natl Acad Sci U S A, vol.109, issue.47, pp.19208-19221, 2012. ,
Nucleic acid binding property of the gene products of rice stripe virus, Virus Genes, vol.31, issue.2, pp.203-212, 2005. ,
Sonchus yellow net rhabdovirus nuclear viroplasms contain polymeraseassociated proteins, J Virol, vol.72, issue.7, pp.5669-79, 1998. ,
A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses, Biol Direct, vol.7, p.13, 2012. ,
Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses, Sci Rep, vol.4, p.5347, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977398
Chimeric viruses blur the borders between the major groups of eukaryotic singlestranded DNA viruses, Nat Commun, vol.4, p.2700, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00881062
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res, vol.25, issue.17, pp.3389-402, 1997. ,
PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information, Methods Mol Biol, vol.1079, pp.263-71, 2014. ,
Jalview Version 2-a multiple sequence alignment editor and analysis workbench, Bioinformatics, vol.25, issue.9, pp.1189-91, 2009. ,
The Jpred 3 secondary structure prediction server, Nucleic Acids Res, vol.36, pp.197-201, 2008. ,
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation, PLoS One, vol.9, issue.9, p.108277, 2014. ,
UCSF Chimera-a visualization system for exploratory research and analysis, J Comput Chem, vol.25, issue.13, pp.1605-1617, 2004. ,
Submit your next manuscript to BioMed Central and take full advantage of: ? Convenient online submission ? Thorough peer review ? No space constraints or color figure charges ? Immediate publication on acceptance ? Inclusion in PubMed, CAS, Scopus and Google Scholar ? Research which is freely available for redistribution, vol.59, pp.307-328, 2010. ,