New interface

Journal articles

Minimum Information about an Uncultivated Virus Genome (MIUViG)

Simon Roux ^{1, *} Evelien M. Adriaenssens ² Bas E. Dutilh ^{3, 4} Eugene V. Koonin ⁵ Andrew M. Kropinski ⁶ Mart Krupovic ⁷ Jens H. Kuhn ⁸ Rob Lavigne ⁹ J. Rodney Brister ⁵ Arvind Varsani ^{10, 11} Clara Amid ¹² Ramy K. Aziz ¹³ Seth R. Bordenstein ¹⁴ Peer Bork ¹⁵ Mya Breitbart ¹⁶ Guy R. Cochrane ¹⁵ Rebecca A. Daly ¹⁷ Christelle Desnues ¹⁸ Melissa B. Duhaime ¹⁹ Joanne B. Emerson ²⁰ François Enault ²¹ Jed A. Fuhrman ²² Pascal Hingamp ²³ Philip Hugenholtz ²⁴ Bonnie L. Hurwitz ²⁵ Natalia N. Ivanova ¹ Jessica M. Labonté ²⁶ Kyung-Bum Lee ²⁷ Rex R. Malmstrom ¹ Manuel Martinez-Garcia ²⁸ Ilene Karsch Mizrachi ⁵ Hiroyuki Ogata ²⁹ David Páez-Espino ¹ Marie-Agnès Petit ³⁰ Catherine Putonti ³¹ Thomas Rattei ³² Alejandro Reyes ³³ Francisco Rodriguez-Valera ³⁴ Karyna Rosario ¹⁶ Lynn Schriml ³⁵ Frederik Schulz ¹ Grieg F. Steward ³⁶ Matthew B. Sullivan ³⁷ Shinichi Sunagawa ³⁸ Curtis A. Suttle ³⁹ Ben Temperton ⁴⁰ Susannah G. Tringe ¹ Rebecca Vega Thurber ⁴¹ Nicole S. Webster ^{24, 42} Katrine L. Whiteson ⁴³ Steven W. Wilhelm ⁴⁴ K. Eric Wommack ⁴⁵ Tanja Woyke ¹ Kelly C. Wrighton ¹⁷ Pelin Yilmaz ⁴⁶ Takashi Yoshida ²⁹ Mark J. Young ⁴⁷ Natalya Yutin ⁵ Lisa Zeigler Allen ^{48, 49} Nikos C. Kyrpides ¹ Emiley A. Eloe-Fadrosh ^{1, *}

* Corresponding author

1 DOE Joint Genome Institute [Walnut Creek]

2 University of Liverpool

3 Theoretical Biology & Bioinformatics [Utrecht]

4 Radboud University Medical Center [Nijmegen]

5 NCBI - National Center for Biotechnology Information

6 University of Guelph

7 BMGE - Biologie Moléculaire du Gène chez les Extrêmophiles

8 NIAID-NIH - National Institute of Allergy and Infectious Diseases [Bethesda]

9 KU Leuven - Catholic University of Leuven - Katholieke Universiteit Leuven

10 ASU - Arizona State University [Tempe]

11 University of Cape Town

12 EMBL-EBI - European Bioinformatics Institute [Hinxton]

13 Cairo University

14 Vanderbilt University [Nashville]

15 EMBL - European Molecular Biology Laboratory [Heidelberg]

16 USF - University of South Florida [Tampa]

17 CSU - Colorado State University [Fort Collins]

18 MEPHI - Microbes évolution phylogénie et infections

19 University of Michigan [Ann Arbor]

20 UC Davis - University of California [Davis]

21 LMGE - Laboratoire Microorganismes : Génome et Environnement

22 USC - University of Southern California

23 MIO - Institut méditerranéen d'océanologie

24 University of Queensland [Brisbane]

25 University of Arizona

26 Texas A&M University [Galveston]

27 NIG - National Institute of Genetics

28 Universidad de Alicante

29 Kyoto University [Kyoto]

30 MICALIS - MICrobiologie de l'ALImentation au Service de la Santé

31 University of Chicago

32 Department of Microbiology and Ecosystem Science [Vienna]

33 UNIANDES - Universidad de los Andes [Bogota]

34 UMH - Universidad Miguel Hernández [Elche]

35 University of Maryland School of Medicine

36 UHM - University of Hawai‘i [Mānoa]

37 OSU - Ohio State University [Columbus]

38 ETH Zürich - Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich]

39 UBC - University of British Columbia

40 University of Exeter

41 OSU - Oregon State University

42 AIMS Townsville - Australian Institute of Marine Science [Townsville]

43 UCI - University of California [Irvine]

44 The University of Tennessee [Knoxville]

45 University of Delaware [Newark]

46 Max Planck Institute for Marine Microbiology

47 MSU - Montana State University

48 J. Craig Venter Institute

49 UC San Diego - University of California [San Diego]

Abstract : We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.

Keywords : commitee prediction annotation pipeline discovery tacomony phage dna viruses

Document type :

Journal articles

Domain :

Life Sciences [q-bio]

Complete list of metadata

Cited literature [99 references] Display Hide Download

https://hal-pasteur.archives-ouvertes.fr/pasteur-01977322
Contributor : Floran Bidault Connect in order to contact the contributor
Submitted on : Thursday, January 10, 2019 - 4:53:52 PM
Last modification on : Thursday, September 1, 2022 - 4:07:44 AM
Long-term archiving on: : Thursday, April 11, 2019 - 5:25:57 PM