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Minimum Information about an Uncultivated Virus Genome (MIUViG)

Simon Roux 1, * Evelien M. Adriaenssens 2 Bas E. Dutilh 3, 4 Eugene V. Koonin 5 Andrew M. Kropinski 6 Mart Krupovic 7 Jens H. Kuhn 8 Rob Lavigne 9 J. Rodney Brister 5 Arvind Varsani 10, 11 Clara Amid 12 Ramy K. Aziz 13 Seth R. Bordenstein 14 Peer Bork 15 Mya Breitbart 16 Guy R. Cochrane 15 Rebecca A. Daly 17 Christelle Desnues 18 Melissa B. Duhaime 19 Joanne B. Emerson 20 François Enault 21 Jed A. Fuhrman 22 Pascal Hingamp 23 Philip Hugenholtz 24 Bonnie L. Hurwitz 25 Natalia N. Ivanova 1 Jessica M. Labonté 26 Kyung-Bum Lee 27 Rex R. Malmstrom 1 Manuel Martinez-Garcia 28 Ilene Karsch Mizrachi 5 Hiroyuki Ogata 29 David Páez-Espino 1 Marie-Agnès Petit 30 Catherine Putonti 31 Thomas Rattei 32 Alejandro Reyes 33 Francisco Rodriguez-Valera 34 Karyna Rosario 16 Lynn Schriml 35 Frederik Schulz 1 Grieg F. Steward 36 Matthew B. Sullivan 37 Shinichi Sunagawa 38 Curtis A. Suttle 39 Ben Temperton 40 Susannah G. Tringe 1 Rebecca Vega Thurber 41 Nicole S. Webster 24, 42 Katrine L. Whiteson 43 Steven W. Wilhelm 44 K. Eric Wommack 45 Tanja Woyke 1 Kelly C. Wrighton 17 Pelin Yilmaz 46 Takashi Yoshida 29 Mark J. Young 47 Natalya Yutin 5 Lisa Zeigler Allen 48, 49 Nikos C. Kyrpides 1 Emiley A. Eloe-Fadrosh 1, *
* Corresponding author
1 DOE Joint Genome Institute [Walnut Creek]
2 University of Liverpool
3 Theoretical Biology & Bioinformatics [Utrecht]
4 Radboud University Medical Center [Nijmegen]
5 NCBI - National Center for Biotechnology Information
6 University of Guelph
7 BMGE - Biologie Moléculaire du Gène chez les Extrêmophiles
8 NIAID-NIH - National Institute of Allergy and Infectious Diseases [Bethesda]
9 KU Leuven - Catholic University of Leuven - Katholieke Universiteit Leuven
10 ASU - Arizona State University [Tempe]
11 University of Cape Town
12 EMBL-EBI - European Bioinformatics Institute [Hinxton]
13 Cairo University
14 Vanderbilt University [Nashville]
15 EMBL - European Molecular Biology Laboratory [Heidelberg]
16 USF - University of South Florida
17 CSU - Colorado State University [Fort Collins]
18 MEPHI - Microbes évolution phylogénie et infections
19 University of Michigan [Ann Arbor]
20 UC Davis - University of California [Davis]
21 LMGE - Laboratoire Microorganismes : Génome et Environnement - Clermont Auvergne
22 USC - University of Southern California
23 MIO - Institut méditerranéen d'océanologie
24 University of Queensland [Brisbane]
25 University of Arizona
26 Texas A&M University [Galveston]
27 NIG - National Institute of Genetics
28 Universidad de Alicante
29 Kyoto University [Kyoto]
30 MICALIS - MICrobiologie de l'ALImentation au Service de la Santé
31 University of Chicago
32 Department of Microbiology and Ecosystem Science [Vienna]
33 UNIANDES - Universidad de los Andes [Bogota]
34 UMH - Universidad Miguel Hernández [Elche]
35 University of Maryland School of Medicine
36 UHM - University of Hawai‘i [Mānoa]
37 OSU - Ohio State University [Columbus]
38 ETH Zürich - Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology in Zürich [Zürich]
39 UBC - University of British Columbia
40 University of Exeter
41 OSU - Oregon State University
42 AIMS Townsville - Australian Institute of Marine Science [Townsville]
43 UCI - University of California [Irvine]
44 The University of Tennessee [Knoxville]
45 University of Delaware [Newark]
46 Max Planck Institute for Marine Microbiology
47 MSU - Montana State University
48 J Craig Venter Institute
49 UC San Diego - University of California [San Diego]
Abstract : We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.
Keywords : commitee prediction annotation pipeline discovery tacomony phage dna viruses
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Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, et al.. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology, Nature Publishing Group, 2019, 37 (1), pp.29-37. ⟨10.1038/nbt.4306⟩. ⟨pasteur-01977322⟩

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