An in vitro feeding technique for artificially demonstrating virus transmission by mosquitoes, Mosquito News, vol.37, pp.130-133, 1977. ,
Efficiency of dengue serotype 2 virus strains to infect and disseminate in Aedes aegpti, The American Journal of Tropical Medicine and Hygiene, vol.68, pp.539-583, 2003. ,
Use of serum and blood samples on filter paper to improve the surveillance of dengue in Pacific Island Countries, Journal of Clinical Virology, vol.55, issue.1, pp.23-32, 2012. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00734957
The global distribution and burden of dengue, Nature, vol.496, pp.504-511, 2013. ,
The endosymbiotic bacterium Wolbachia induces resistance to dengue virus in Aedes aegypti, PLoS Pathogens, vol.6, p.1000833, 2010. ,
Ray Meta: scalable de novo metagenome assembly and profiling, Genome Biology, vol.13, p.122, 2012. ,
Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, pp.2114-2134, 2014. ,
Venezuelan equine encephalitis emergence: enhanced vector infection from a single amino acid substitution in the envelope glycoprotein, Proceedings of the National Academy of Sciences USA, vol.101, pp.11344-11353, 2004. ,
Are vector competence experiments competent vector experiments?, Arbovirus Research in Australia, vol.8, pp.126-156, 2001. ,
Viral quasispecies evolution, Microbiology and Molecular Biology Reviews, vol.76, issue.2, pp.159-216, 2012. ,
Arboviral bottlenecks and challenges to maintaining diversity and fitness during mosquito transmission, PLoS Pathogens, vol.6, p.1002897, 2012. ,
Tissue barriers to arbovirus infection in mosquitoes, pp.3741-67, 2011. ,
Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness, Cell Host Microbe, vol.19, issue.5, pp.481-92, 2015. ,
,
Isolation of a Singhs Aedes-albopictus cell clone sensitive to dengue and chikungunya viruses, The Journal of General Virology, vol.40, pp.531-575, 1978. ,
, Classes and Methods for R Developed in the Political Science Computational Laboratory, 2017.
Serotype-specific detection of dengue viruses in a fourplex real-time reverse transcriptase PCR assay, Journal of Clinical Microbiology, vol.43, pp.4977-83, 2005. ,
Dengue viruses cluster antigenically but not as discrete serotypes, Science, vol.349, pp.1338-1381, 2015. ,
Evolutionary dynamics of dengue virus populations within the mosquito vector', Current Opinion in Virology, BMC Evolutionary Biology, vol.9, issue.1, p.646, 2009. ,
Fast gapped-read alignment with Bowtie 2', Nature Methods, vol.9, pp.357-54, 2012. ,
Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes, PLoS Genetics, vol.12, p.1006111, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01360140
The sequence alignment/map format and SAMtools, Bioinformatics, vol.25, pp.2078-2087, 2009. ,
Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin', Virus Evolution, vol.2, p.26, 2016. ,
Estimation of the size of genetic bottlenecks in cell-to-cell movement of soil-borne wheat mosaic virus and the possible role of the bottlenecks in speeding up selection of variations in trans-acting genes or elements, Journal of Virology, vol.84, pp.1828-1865, 2010. ,
A newly emergent genotype of West Nile virus is transmitted earlier and more efficiently by Culex mosquitoes, The American Journal of Tropical Medicine and Hygiene, vol.77, pp.365-70, 2007. ,
The evolution of RNA viruses: A population genetics view, Proceedings of the National Academy of Sciences USA, 97, vol.13, pp.6967-73, 2000. ,
Host and viral features of human dengue cases shape the population of infected and infectious Aedes aegypti mosquitoes, Proceedings of the National Academy of Sciences USA, vol.110, pp.9072-9079, 2013. ,
Comparison of vector competence of Aedes mediovittatus and Aedes aegypti for dengue virus: implications for dengue control in the Caribbean, PLOS Neglected Tropical Diseases, vol.9, issue.2, p.3462, 2015. ,
Highly divergent dengue virus type 1 genotype sets a new distance record, Scientific Reports, vol.6, issue.1, 2016. ,
BEDTools: a flexible suite of utilities for comparing genomic features, Bioinformatics, vol.26, pp.841-843, 2010. ,
, R: A language and environment for statistical computing, R Foundation for Statistical Computing, 2008.
Dengue virus replicates and accumulates in Aedes aegypti salivary glands, Virology, vol.507, pp.75-81, 2017. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01976225
A simple method of estimating fifty per cent endpoints, American Journal of Epidemiology, vol.27, pp.493-500, 1938. ,
Vector competence of Aedes aegypti and aedes polynesiensis populations from french polynesia for chikungunya virus, PLOS Neglected Tropical Diseases, vol.10, p.138161, 2015. ,
Analysis of dengue virus genetic diversity during human and mosquito infection reveals genetic constraints, PLOS Neglected Tropical Diseases, vol.9, p.4044, 2015. ,
Tracking dengue virus intra-host genetic diversity during human-to-mosquito transmission, PLoS Neglected Tropical Diseases, vol.9, p.4052, 2015. ,
Whole-genome sequencing analysis from the chikungunya virus caribbean outbreak reveals novel evolutionary genomic elements, PLoS Neglected Tropical Diseases, vol.15, p.4402, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01634324
A single mutation in chikungunya virus affects vector specificity and epidemic potential', PLoS Pathogens, 3/12: e201 van den Hurk, Jounal of Medical Entomology, vol.44, pp.845-50, 2007. ,
Orally co-Infected Aedes albopictus from La Reunion Island, Indian Ocean, can deliver both dengue and chikungunya infectious viral particles in their saliva, Scientific Reports, vol.6, p.29564, 2010. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00490530
Chikungunya virus transmission potential by local Aedes mosquitoes in the Americas and Europe, PLoS Neglected Tropical Diseases, vol.9, p.3780, 2015. ,
Molecular evolution of dengue viruses: contributions of phylogenetics to understanding the history and epidemiology of the preeminent arboviral disease, Infection, Genetics and Evolution, vol.9, pp.523-563, 2002. ,
Comparative susceptibility of Aedes albopictus and Aedes aegypti to Dengue Virus Infection After Feeding On Blood Of Viremic Humans: Implications For Public Health, Journal of Infectious Disease, vol.212, pp.1182-90, 2015. ,
stringr: Simple, Consistent Wrappers for Common String Operations, Journal of Statistical Software, vol.40, p.1, 2009. ,
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets, Nucleic Acids Research, vol.40, pp.11189-201, 2012. ,