Shorter survival in advanced human immunodeficiency virus type 1 infection is more closely associated with T lymphocyte activation than with plasma virus burden or virus chemokine coreceptor usage, J. Infect. Dis, vol.179, pp.859-870, 1999. ,
CD4 T cell depletion is linked directly to immune activation in the pathogenesis of HIV-1 and HIV-2 but only indirectly to the viral load, J. Immunol, vol.169, pp.3400-3406, 2002. ,
Immune activation set point during early HIV infection predicts subsequent CD4+ T-cell changes independent of viral load, Blood, vol.104, pp.942-947, 2004. ,
Persistent immune activation in HIV-1 infection is associated with progression to AIDS, AIDS, vol.17, pp.1881-1888, 2003. ,
Pre-seroconversion immune status predicts the rate of CD4 T cell decline following HIV infection, AIDS, vol.18, pp.1885-1893, 2004. ,
The nature of the principal type 1 interferon-producing cells in human blood, Science, vol.284, pp.1835-1837, 1999. ,
Plasmacytoid dendritic cells in immunity, Nat. Immunol, vol.5, p.1219, 2004. ,
Functional dichotomy of plasmacytoid dendritic cells: antigen-specific activation of T cells versus production of type I interferon, Eur. J. Immunol, vol.38, pp.1822-1832, 2008. ,
Plasmacytoid dendritic cells: linking innate and adaptive immunity, J. Virol, vol.79, pp.17-27, 2005. ,
Human immunodeficiency virus type 1 activates plasmacytoid dendritic cells and concomitantly induces the bystander maturation of myeloid dendritic cells, J. Virol, vol.78, pp.5223-5232, 2004. ,
Induction of a striking systemic cytokine cascade prior to peak viraemia in acute human immunodeficiency virus type 1 infection, in contrast to more modest and delayed responses in acute hepatitis B and C virus infections, J. Virol, vol.83, pp.3719-3733, 2009. ,
Primary infection with simian immunodeficiency virus: plasmacytoid dendritic cell homing to lymph nodes, type I interferon, and immune suppression, Blood, vol.112, pp.4598-4608, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00345337
Anti-HIV state but not apoptosis depends on IFN signature in CD4+ T cells, J. Immunol, vol.177, pp.6227-6237, 2006. ,
Type I interferon production in HIV-infected patients, J. Leukoc. Biol, vol.80, pp.984-993, 2006. ,
Gene expression profiling of host response in models of acute HIV infection, J. Immunol, vol.173, pp.6858-6863, 2004. ,
Distinct transcriptional profiles in ex vivo CD4+ and CD8+ T cells are established early in human immunodeficiency virus type 1 infection and are characterized by a chronic interferon response as well as extensive transcriptional changes in CD8+ T cells, J. Virol, vol.81, pp.3477-3486, 2007. ,
HIV-1 immunopathogenesis: how good interferon turns bad, Clin. Immunol, vol.123, pp.121-128, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00110852
Differential CD4+ T-lymphocyte apoptosis and bystander T-Cell activation in rhesus macaques and sooty mangabeys during acute simian immunodeficiency virus infection, J. Virol, vol.83, pp.572-583, 2009. ,
Generation of CD3+CD8low thymocytes in the HIV Type 1-infected thymus, J. Immunol, vol.169, pp.2788-2796, 2002. ,
African non human primates infected by SIV-why don't they get sick? Lessons from studies on the early phase of non-pathogenic SIV infection, Curr. HIV Res, vol.7, pp.39-50, 2009. ,
Plasmacytoid dendritic cell dynamics and alpha interferon production during Simian immunodeficiency virus infection with a nonpathogenic outcome, J. Virol, vol.82, pp.5145-5152, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00345347
Divergent TLR7 and TLR9 signaling and type I interferon production distinguish pathogenic and nonpathogenic AIDS virus infections, Nat. Med, vol.14, p.1077, 2008. ,
Critical loss of the balance between Th17 and T regulatory cell populations in pathogenic SIV infection, PLoS Pathog, vol.5, p.1000295, 2009. ,
Antiinflammatory profiles during primary SIV infection in African green monkeys are associated with protection against AIDS, J. Clin. Invest, vol.115, pp.1082-1091, 2005. ,
Gag p27-specific Band T-cell responses in Simian immunodeficiency virus SIVagm-infected African green monkeys, J. Virol, vol.83, pp.2770-2777, 2009. ,
Long oligonucleotide microarrays for African green monkey gene expression profile analysis, FASEB J, vol.21, pp.3262-3271, 2007. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00161248
Transcriptional profiling in pathogenic and non-pathogenic SIV infections reveals significant distinctions in kinetics and tissue compartmentalization, PLoS Pathog, vol.5, p.1000296, 2009. ,
High-throughput gene expression profiling indicates dysregulation of intestinal cell cycle mediators and growth factors during primary simian immunodeficiency virus infection, Virology, vol.312, pp.84-94, 2003. ,
Distinct expression profiles of TGF-beta1 signaling mediators in pathogenic SIVmac and non-pathogenic SIVagm infections, Retrovirology, vol.3, p.37, 2006. ,
URL : https://hal.archives-ouvertes.fr/inserm-00089761
Programmed cell death and AIDS: significance of T-cell apoptosis in pathogenic and nonpathogenic primate lentiviral infections, Proc. Natl. Acad. Sci. U. S. A, vol.91, pp.9431-9435, 1994. ,
Early divergence in lymphoid tissue apoptosis between pathogenic and nonpathogenic simian immunodeficiency virus infections of nonhuman primates, J. Virol, vol.82, pp.1175-1184, 2008. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01969014
Interferons: signaling, antiviral and viral evasion, Immunol. Lett, vol.122, pp.1-11, 2009. ,
The relationship between the interferon alpha response and viral burden in primary SIV infection, AIDS Res. Hum. Retroviruses, vol.12, pp.1273-1278, 1996. ,
Simian immunodeficiency viruses from central and western Africa: evidence for a new species-specific lentivirus in tantalus monkeys, J. Virol, vol.67, pp.1227-1235, 1993. ,
Visualizing antigen-specific and infected cells in situ predicts outcomes in early viral infection, Science, vol.323, pp.1726-1729, 2009. ,
Lack of dichotomy between virus load of peripheral blood and lymph nodes during long-term simian immunodeficiency virus infection of African green monkeys, Virology, vol.219, p.367, 1996. ,
High levels of viral replication during primary simian immunodeficiency virus SIVagm infection are rapidly and strongly controlled in African green monkeys, J. Virol, vol.74, pp.7538-7547, 2000. ,
Roles for CXC chemokine ligands 10 and 11 in recruiting CD4+ T cells to HIV1-infected monocyte-derived macrophages, dendritic cells, and lymph nodes, J. Immunol, vol.174, pp.4892-4900, 2005. ,
Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys, J. Clin. Invest, vol.119, pp.3556-3572, 2009. ,
IL-10-producing and naturally occurring CD4+ Tregs: limiting collateral damage, J. Clin. Invest, vol.114, pp.1372-1378, 2004. ,
Premature induction of an immunosuppressive regulatory T cell response during acute simian immunodeficiency virus infection, J. Infect. Dis, vol.193, pp.703-712, 2006. ,
The feedback phase of type I interferon induction in dendritic cells requires interferon regulatory factor 8, Immunity, vol.27, pp.228-239, 2007. ,
Early and sustained innate immune response defines pathology and death in nonhuman primates infected by highly pathogenic influenza virus, Proc. Natl. Acad. Sci. U. S. A, vol.106, pp.3455-3460, 2009. ,
Chronic innate immune activation as a cause of HIV-1 immunopathogenesis, Clin. Immunol, vol.126, pp.235-242, 2008. ,
IL-6 controls Th17 immunity in vivo by inhibiting the conversion of conventional T cells into Foxp3+ regulatory T cells, Proc. Natl. Acad. Sci. U. S. A, vol.105, pp.18460-18465, 2008. ,
Simultaneous detection of multiple cytokines and chemokines from nonhuman primates using luminex technology, J. Immunol. Methods, vol.301, p.89, 2005. ,
Severe depletion of mucosal CD4+ T cells in AIDS-free simian immunodeficiency virus-infected sooty mangabeys, J. Immunol, vol.179, pp.3026-3034, 2007. ,
Phenotype and function of myeloid dendritic cells derived from African green monkey blood monocytes, J. Immunol. Methods, vol.308, p.138, 2006. ,
Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700/Panther probe-togene annotations, BMC Bioinformatics, vol.6, p.307, 2005. ,
Normalization using weighted negative second order exponential error functions (NeONORM) provides robustness against asymmetries in comparative transcriptome profiles and avoids false calls, Genomics Proteomics Bioinformatics, vol.4, pp.90-109, 2006. ,
High-sensitivity transcriptome profiles exhibit distinct signal distribution properties having significant implications for data analysis and biologic interpretation, Genomics Proteomics Bioinformatics, vol.4, pp.212-229, 2006. ,
TM4: a free, open-source system for microarray data management and analysis, Biotechniques, vol.34, pp.374-378, 2003. ,
PANTHER: a library of protein families and subfamilies indexed by function, 2003. ,
, Genome Res, vol.13, pp.2129-2141