Determinants of nucleosome positioning, Nat Struct Mol Biol, vol.20, pp.267-273, 2013. ,
Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses, Genome Res, vol.10, pp.1307-1318, 2000. ,
Presidential address. Transposable elements, epigenetics, and genome evolution, Science, vol.338, pp.758-767, 2012. ,
Transposable elements and host genome evolution, Trends Ecol Evol, vol.15, pp.95-99, 2000. ,
The impact of retrotransposons on human genome evolution, Nat Rev Genet, vol.10, pp.691-703, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00419189
Undermethylation of specific LINE-1 sequences in human cells producing a LINE-1-encoded protein, Gene, vol.133, pp.273-277, 1993. ,
Establishing, maintaining and modifying DNA methylation patterns in plants and animals, Nat Rev Genet, vol.11, pp.204-220, 2010. ,
Repressive LTR nucleosome positioning by the BAF complex is required for HIV latency, PLoS Biol, vol.9, p.1001206, 2011. ,
The Ty1 LTR-retrotransposon of budding yeast, Microbiol Spectr, vol.3, pp.1-35, 2015. ,
Small RNAs and regulation of transposons in plants, Genes, 2013. ,
L1 retrotransposition in human neural progenitor cells, Nature, vol.460, pp.1127-1131, 2009. ,
Severe adenine starvation activates Ty1 transcription and retrotransposition in Saccharomyces cerevisiae, Mol Cell Biol, vol.25, pp.7459-7472, 2005. ,
Global transcriptional responses of fission yeast to environmental stress, Mol Biol Cell, vol.14, pp.214-229, 2003. ,
SREBP controls oxygendependent mobilization of retrotransposons in fission yeast, PLoS Genet, vol.3, p.131, 2007. ,
Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin, Mol Cell, vol.27, pp.289-299, 2007. ,
A single amino acid change in the yeast retrotransposon Ty5 abolishes targeting to silent chromatin, Mol Cell, vol.1, pp.1051-1055, 1998. ,
Targeting of the yeast Ty5 retrotransposon to silent chromatin is mediated by interactions between integrase and Sir4p, Mol Cell Biol, vol.21, pp.6606-6614, 2001. ,
LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes?, Trends Neurosci, vol.33, pp.345-354, 2010. ,
Somatic retrotransposition alters the genetic landscape of the human brain, Nature, vol.479, pp.534-537, 2011. ,
Altruistic functions for selfish DNA, Cell Cycle, vol.8, pp.2895-2900, 2009. ,
Embryonic stem cell potency fluctuates with endogenous retrovirus activity, Nature, vol.487, pp.57-63, 2012. ,
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance, Nat Genet, vol.46, pp.558-566, 2014. ,
The genome sequence of Schizosaccharomyces pombe, Nature, vol.415, pp.871-880, 2002. ,
Specific functions for the fission yeast Sirtuins Hst2 and Hst4 in gene regulation and retrotransposon silencing, EMBO J, vol.26, pp.2477-2488, 2007. ,
RNAi triggered by specialized machinery silences developmental genes and retrotransposons, Nature, vol.493, pp.557-560, 2013. ,
Host genome surveillance for retrotransposons by transposon-derived proteins, Nature, vol.451, pp.431-436, 2008. ,
CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons, Mol Cell Biol, vol.32, pp.4215-4225, 2012. ,
A novel mechanism of self-primed reverse transcription defines a new family of retroelements, Mol Cell Biol, vol.15, pp.3310-3317, 1995. ,
A complex structure in the mRNA of Tf1 is recognized and cleaved to generate the primer of reverse transcription, Genes Dev, vol.11, pp.270-285, 1997. ,
Identification of multiple distinct Snf2 subfamilies with conserved structural motifs, Nucleic Acids Res, vol.34, pp.2887-2905, 2006. ,
Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis, PLoS Comput Biol, vol.7, p.1002163, 2011. ,
, , 2012.
, SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae, PLoS Genet, vol.8, p.1002974
The yeast Fun30 and human SMARCAD1 chromatin remodellers promote DNA end resection, Nature, vol.489, pp.581-584, 2012. ,
URL : https://hal.archives-ouvertes.fr/cea-00880982
The Fun30 nucleosome remodeller promotes resection of DNA double-strand break ends, Nature, vol.489, pp.576-580, 2012. ,
The Saccharomyces cerevisiae chromatin remodeler Fun30 regulates DNA end resection and checkpoint deactivation, Mol Cell Biol, vol.32, pp.4727-4740, 2012. ,
The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes, J Biol Chem, vol.288, pp.23182-23193, 2013. ,
Maintenance of silent chromatin through replication requires SWI/SNF-like chromatin remodeler SMARCAD1, Mol Cell, vol.42, pp.285-296, 2011. ,
The FUN30 chromatin remodeler, Fft3, protects centromeric and subtelomeric domains from euchromatin formation, PLoS Genet, vol.7, p.1001334, 2011. ,
The Fun30 chromatin remodeler Fft3 controls nuclear organization and chromatin structure of insulators and subtelomeres in fission yeast, PLoS Genet, vol.11, p.1005101, 2015. ,
A trans-dominant form of Gag restricts Ty1 retrotransposition and mediates copy number control, J Virol, vol.89, pp.3922-3938, 2015. ,
Comparative functional genomics of the fission yeasts, Science, vol.332, pp.930-936, 2011. ,
0 end-centered expression profiling using cap-analysis gene expression and nextgeneration sequencing, Nat Protoc, vol.5, pp.542-561, 2012. ,
Mapping genomic hotspots of DNA damage by a single-strand-DNAcompatible and strand-specific ChIP-seq method, Genome Res, vol.23, pp.705-715, 2013. ,
Hip3 interacts with the HIRA proteins Hip1 and Slm9 and is required for transcriptional silencing and accurate chromosome segregation, J Biol Chem, vol.281, pp.8732-8739, 2006. ,
Regulation of histone H3 lysine 56 acetylation in Schizosaccharomyces pombe, J Biol Chem, vol.282, pp.15040-15047, 2007. ,
Cell cycle and checkpoint regulation of histone H3 K56 acetylation by Hst3 and Hst4, Mol Cell, vol.23, pp.109-119, 2006. ,
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation, Mol Cell, vol.36, pp.153-163, 2009. ,
Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex, Nature, vol.395, pp.917-921, 1998. ,
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme, Science, vol.340, pp.195-199, 2013. ,
Single-nucleotidespecific targeting of the Tf1 retrotransposon promoted by the DNAbinding protein Sap1 of Schizosaccharomyces pombe, Genetics, vol.201, pp.905-924, 2015. ,
Arrested replication forks guide retrotransposon integration, Science, vol.349, pp.1549-1553, 2015. ,
High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe, Genome Res, vol.20, pp.239-248, 2010. ,
Determinants that specify the integration pattern of retrotransposon Tf1 in the fbp1 promoter of Schizosaccharomyces pombe, J Virol, vol.85, pp.519-529, 2011. ,
Transposon integration enhances expression of stress response genes, Nucleic Acids Res, vol.41, pp.775-789, 2013. ,
Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators, Mol Cell, vol.30, pp.98-107, 2008. ,
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos, Dev Cell, vol.7, pp.597-606, 2004. ,
HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency, Retrovirology, vol.9, p.111, 2012. ,
The regulated retrotransposon transcriptome of mammalian cells, Nat Genet, vol.41, pp.563-571, 2009. ,
Unamplified cap analysis of gene expression on a single-molecule sequencer, 2011. ,
, Genome Res, vol.21, pp.1150-1159
Evolution of the mammalian transcription factor binding repertoire via transposable elements, Genome Res, vol.18, pp.1752-1762, 2008. ,
Transposable elements have rewired the core regulatory network of human embryonic stem cells, Nat Genet, vol.42, pp.631-634, 2010. ,
Keeping active endogenous retroviral-like elements in check: the epigenetic perspective, Cell Mol Life Sci, vol.65, pp.3329-3347, 2008. ,
Transcription through the HIV-1 nucleosomes: effects of the PBAF complex in Tat activated transcription, Virology, vol.405, pp.322-333, 2010. ,
Regulation of HIV-1 latency by chromatin structure and nuclear architecture, J Mol Biol, vol.427, pp.688-694, 2015. ,
Molecular genetic analysis of fission yeast Schizosaccharomyces pombe, Methods Enzymol, vol.194, pp.795-823, 1991. ,
Simplified primer design for PCRbased gene targeting and microarray primer database: two web tools for fission yeast, Yeast, vol.23, pp.921-928, 2006. ,
Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using LuriaDelbruck fluctuation analysis, Bioinformatics, vol.25, pp.1564-1565, 2009. ,
Chromatin immunoprecipitation using microarrays, Methods Mol Biol, vol.529, pp.279-295, 2009. ,
DNA topoisomerase III localizes to centromeres and affects centromeric CENP-A levels in fission yeast, PLoS Genet, vol.9, p.1003371, 2013. ,
Fast gapped-read alignment with Bowtie 2, Nat Methods, vol.9, pp.357-359, 2012. ,
The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe, Nucleus, vol.3, pp.77-87, 2012. ,
, , 2009.
, Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe, Methods, vol.48, pp.218-225
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, Genome Biol, vol.10, p.25, 2009. ,
DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing, Genome Res, vol.23, pp.341-351, 2013. ,
Mutations in the fission yeast silencing factors clr4+ and rik1+ disrupt the localisation of the chromo domain protein Swi6p and impair centromere function, J Cell Sci, vol.109, pp.2637-2648, 1996. ,