Molecular epidemiology and evolution of enterovirus 71 strains isolated from, 1970. ,
Basic rationale, current methods and future directions for molecular typing of human enterovirus, Expert Review of Molecular Diagnostics, vol.44, issue.4, pp.419-434, 2007. ,
DOI : 10.1128/JCM.43.8.3779-3787.2005
Recent advances in the molecular epidemiology and control of human enterovirus 71 infection, Current Opinion in Virology, vol.2, issue.2, pp.199-205, 2012. ,
DOI : 10.1016/j.coviro.2012.02.009
Virology, epidemiology, pathogenesis, and control of enterovirus 71, The Lancet Infectious Diseases, vol.10, issue.11, pp.778-790, 2010. ,
DOI : 10.1016/S1473-3099(10)70194-8
Prevalence and Characterization of Enterovirus Infections among Pediatric Patients with Hand Foot Mouth Disease, Herpangina and Influenza Like Illness in Thailand, 2012, PLoS ONE, vol.7, issue.6, p.98888, 2012. ,
DOI : 10.1371/journal.pone.0098888.s003
Epidemiology and seroepidemiology of human enterovirus 71 among Thai populations, Journal of Biomedical Science, vol.21, issue.1, p.16, 2014. ,
DOI : 10.1016/S0168-1702(00)00162-3
Reemergence of enterovirus 71 epidemic in northern taiwan, PLoS One, vol.10, p.116322, 2012. ,
Molecular Epidemiology of Enterovirus 71 Infection in the Central Region of Taiwan from 2002 to 2012, PLoS ONE, vol.288, issue.10, pp.83711-83726, 2013. ,
DOI : 10.1371/journal.pone.0083711.s002
Molecular Epidemiology of Human Enterovirus 71 Strains and Recent Outbreaks in the Asia-Pacific Region: Comparative Analysis of the VP1 and VP4 Genes, Emerging Infectious Diseases, vol.9, issue.4, pp.461-468, 2003. ,
DOI : 10.3201/eid0904.020395
Genetic changes of coxsackievirus A16 and enterovirus 71 isolated from hand, foot, and mouth disease patients in Toyama, Japan between, Jpn J Infect Dis, vol.62, pp.254-259, 1981. ,
Characterization of enterovirus 71 and coxsackievirus A16 isolated in hand, foot, and mouth disease patients in Guangdong, 2010, International Journal of Infectious Diseases, vol.17, issue.11, pp.1025-1030, 2010. ,
DOI : 10.1016/j.ijid.2013.04.003
Molecular characterization and complete genome analysis of human enterovirus 71 and coxsackievirus A16 from children with hand, foot and mouth disease in Thailand during 2008-2011, Archives of Virology, vol.139, issue.11, pp.2007-2013, 2008. ,
DOI : 10.1016/j.virusres.2008.07.014
Epidemiologic and virologic investigation of hand, foot, and mouth disease, southern Vietnam, Emerg Infect Dis, vol.13, pp.1733-1741, 2005. ,
First isolation and genomic characterization of enterovirus A71 and coxsackievirus A16 from hand foot and mouth disease patients in the Lao PDR, New Microbes and New Infections, vol.2, issue.6, pp.170-172, 2014. ,
DOI : 10.1002/nmi2.63
Genetic and Antigenic Characterization of Enterovirus 71 in Ho Chi Minh City, Vietnam, 2011, PLoS ONE, vol.7, issue.7, p.69895, 2011. ,
DOI : 10.1371/journal.pone.0069895.s002
Molecular Comparison and Evolutionary Analyses of VP1 Nucleotide Sequences of New African Human Enterovirus 71 Isolates Reveal a Wide Genetic Diversity, PLoS ONE, vol.91, issue.3, p.90624, 2014. ,
DOI : 10.1371/journal.pone.0090624.s005
URL : https://hal.archives-ouvertes.fr/pasteur-01078436
Patterns of polymorphism and divergence in the VP1 gene of enterovirus 71 circulating in the Asia-Pacific region between 1994 and 2013, Journal of Virological Methods, vol.193, issue.2, pp.713-728, 2013. ,
DOI : 10.1016/j.jviromet.2013.07.051
Enterovirus 71???associated Hand, Foot, and Mouth Disease, Southern Vietnam, 2011, Emerging Infectious Diseases, vol.18, issue.12, pp.2002-2005, 2011. ,
DOI : 10.3201/eid1812.120929
URL : https://doi.org/10.3201/eid1812.120929
Highly Sensitive Assay for Detection of Enterovirus in Clinical Specimens by Reverse Transcription-PCR with an Armored RNA Internal Control, Journal of Clinical Microbiology, vol.42, issue.7 ,
DOI : 10.1128/JCM.42.7.3059-3064.2004
Sensitive, Seminested PCR Amplification of VP1 Sequences for Direct Identification of All Enterovirus Serotypes from Original Clinical Specimens, Journal of Clinical Microbiology, vol.44, issue.8, pp.2698-2704, 2006. ,
DOI : 10.1128/JCM.00542-06
Nonlinear partial differential equations and applications: Microarray-based detection and genotyping of viral pathogens, Proceedings of the National Academy of Sciences, vol.16, issue.2, pp.15687-15692, 2002. ,
DOI : 10.1006/mcpr.2001.0397
Unbiased analysis by high throughput sequencing of the viral diversity in fetal bovine serum and trypsin used in cell culture, Biologicals, vol.42, issue.3, pp.145-152, 2014. ,
DOI : 10.1016/j.biologicals.2014.02.002
MUSCLE: a multiple sequence alignment method with reduced time and space complexity, BMC Bioinformatics, vol.5, issue.1, p.113, 2004. ,
DOI : 10.1186/1471-2105-5-113
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.24, issue.8, pp.221-224, 2010. ,
DOI : 10.1093/molbev/msm092
URL : https://hal.archives-ouvertes.fr/lirmm-00511794
Selection of Models of DNA Evolution with jModelTest, Methods Mol Biol, vol.537, pp.93-112, 2009. ,
DOI : 10.1007/978-1-59745-251-9_5
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Molecular Biology and Evolution, vol.141, issue.3, pp.2731-2739, 2011. ,
DOI : 10.1007/BF00160154
RDP3: a flexible and fast computer program for analyzing recombination, Bioinformatics, vol.15, issue.3, pp.2462-2463, 2010. ,
DOI : 10.1093/oxfordjournals.molbev.a025929
RDP: detection of recombination amongst aligned sequences, Bioinformatics, vol.16, issue.6, pp.562-563, 2000. ,
DOI : 10.1093/bioinformatics/16.6.562
Phylogenetic evidence for recombination in dengue virus, Molecular Biology and Evolution, vol.16, issue.3, pp.405-409, 1999. ,
DOI : 10.1093/oxfordjournals.molbev.a026121
Identification of Breakpoints in Intergenotypic Recombinants of HIV Type 1 by Bootscanning, AIDS Research and Human Retroviruses, vol.11, issue.11, pp.1423-1425, 1995. ,
DOI : 10.1089/aid.1995.11.1423
Analyzing the mosaic structure of genes, Journal of Molecular Evolution, vol.34, issue.2, pp.126-129, 1992. ,
DOI : 10.1007/BF00182389
Evaluation of methods for detecting recombination from DNA sequences: Computer simulations, Proceedings of the National Academy of Sciences, vol.11, issue.2, pp.13757-13762, 2001. ,
DOI : 10.1016/0169-5347(96)10041-0
Possible Emergence of New Geminiviruses by Frequent Recombination, Virology, vol.265, issue.2, pp.218-225, 1999. ,
DOI : 10.1006/viro.1999.0056
An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets, Genetics, vol.176, issue.2, pp.1035-1047, 2007. ,
DOI : 10.1534/genetics.106.068874
Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences, Bioinformatics, vol.16, issue.7, pp.573-582, 2000. ,
DOI : 10.1093/bioinformatics/16.7.573
Clinical and Virological Study of Dengue Cases and the Members of Their Households: The Multinational DENFRAME Project, PLoS Neglected Tropical Diseases, vol.82, issue.1, p.1482, 2012. ,
DOI : 10.1371/journal.pntd.0001482.s004
URL : https://hal.archives-ouvertes.fr/pasteur-00667837
Cambodia unravels cause of mystery illness, The Lancet, vol.380, issue.9838, p.206, 2012. ,
DOI : 10.1016/S0140-6736(12)61200-8
Clinical and molecular characterization of hand-foot-and-mouth disease in Thailand, Jpn J Infect Dis, vol.63, pp.229-233, 2008. ,
The largest outbreak of hand; foot and mouth disease in Singapore in 2008: The role of enterovirus 71 and coxsackievirus A strains, International Journal of Infectious Diseases, vol.14, issue.12, pp.1076-1081, 2010. ,
DOI : 10.1016/j.ijid.2010.07.006
Risk factors of severe hand, foot and mouth disease: a meta-analysis, Scand J Infect Dis, vol.46, pp.515-522, 2014. ,
The Population-Based Health Effect of Hand, Foot and Mouth Disease in Children in Shanghai, The Pediatric Infectious Disease Journal, vol.33, issue.5, pp.448-452, 2014. ,
DOI : 10.1097/INF.0000000000000136
Comparative epidemiology and virology of fatal and nonfatal cases of hand, foot and mouth disease in mainland China from 2008 to 2014, Reviews in Medical Virology, vol.370, issue.38, pp.115-128, 2008. ,
DOI : 10.1056/NEJMoa1304923
Hand, foot, and mouth disease in China, 2008???12: an epidemiological study, The Lancet Infectious Diseases, vol.14, issue.4, pp.308-318, 2014. ,
DOI : 10.1016/S1473-3099(13)70342-6
Epidemiological and etiological characteristics of hand, foot, and mouth disease in Ningbo, China, 2008???2011, Journal of Clinical Virology, vol.54, issue.4, pp.342-348, 2008. ,
DOI : 10.1016/j.jcv.2012.04.021
ABSTRACT, Journal of Virology, vol.89, issue.17, pp.8871-8879, 2015. ,
DOI : 10.1128/JVI.00706-15
Hand foot and mouth disease due to enterovirus 71 in Malaysia, Virologica Sinica, vol.17, issue.4, pp.221-228, 2011. ,
DOI : 10.1016/S1386-6532(00)00067-6
Reemergence of Enterovirus 71 in 2008 in Taiwan: Dynamics of Genetic and Antigenic Evolution from 1998 to 2008, Journal of Clinical Microbiology, vol.47, issue.11, pp.3653-3662, 1998. ,
DOI : 10.1128/JCM.00630-09
Frequent Importation of Enterovirus 71 from Surrounding Countries into the Local Community of Yamagata, Japan, between 1998 and 2003, Journal of Clinical Microbiology, vol.43, issue.12, pp.6171-6175, 1998. ,
DOI : 10.1128/JCM.43.12.6171-6175.2005
Inferring nonneutral evolution from contrasting patterns of polymorphisms and divergences in different protein coding regions of enterovirus 71 circulating in Taiwan during 1998-2003, BMC Evolutionary Biology, vol.10, issue.1, p.294, 1998. ,
DOI : 10.1186/1471-2148-10-294
Genetic and antigenic analyses of enterovirus 71 isolates in Taiwan during 1998???2005, Clinical Microbiology and Infection, vol.13, issue.8, pp.782-787, 2007. ,
DOI : 10.1111/j.1469-0691.2007.01745.x
Enterovirus 71 Outbreak, Brunei, Emerging Infectious Diseases, vol.15, issue.1, pp.79-82, 2009. ,
DOI : 10.3201/eid1501.080264
Seroepidemiology of Human Enterovirus 71 Infection among Children, Cambodia, Emerging Infectious Diseases, vol.22, issue.1, pp.92-95, 2016. ,
DOI : 10.3201/eid2201.151323
URL : https://hal.archives-ouvertes.fr/pasteur-01739372
Enterovirus 71 Outbreak in the People's Republic of China in 2008, Journal of Clinical Microbiology, vol.47, issue.7, pp.2351-2352, 2009. ,
DOI : 10.1128/JCM.00563-09
Epidemiological and clinical characteristics of children who died from hand, foot and mouth disease in Vietnam, 2011, BMC Infectious Diseases, vol.92, issue.10, p.341, 2011. ,
DOI : 10.1111/j.1651-2227.2003.tb02478.x
Epidemiologic Features of Hand-Foot-Mouth Disease and Herpangina Caused by Enterovirus 71 in Taiwan, 1998 2005, PEDIATRICS, vol.120, issue.2, pp.244-252, 1998. ,
DOI : 10.1542/peds.2006-3331
Correlation Analysis of EV71 Detection and Case Severity in Hand, Foot, and Mouth Disease in the Hunan Province of China, PLoS ONE, vol.125, issue.6, p.100003, 2014. ,
DOI : 10.1371/journal.pone.0100003.t004
A case???control study of risk factors for severe hand???foot???mouth disease among children in Ningbo, China, 2010???2011, European Journal of Pediatrics, vol.24, issue.9, pp.1359-1364, 2010. ,
DOI : 10.1111/j.1442-200X.2006.02198.x
Distribution of enteroviruses in hospitalized children with hand, foot and mouth disease and relationship between pathogens and nervous system complications, Virology Journal, vol.9, issue.1, p.8, 2012. ,
DOI : 10.1128/JVI.00434-09
Enterovirus 71 from fatal and nonfatal cases of hand, foot and mouth disease epidemics in Malaysia, 1997. ,
Influence of vitamin A status on the antiviral immunity of children with hand, foot and mouth disease, Clinical Nutrition, vol.31, issue.4, pp.543-548, 2012. ,
DOI : 10.1016/j.clnu.2011.12.005
Human enterovirus co-infection in severe HFMD patients in China, Journal of Clinical Virology, vol.61, issue.4, pp.621-622, 2014. ,
DOI : 10.1016/j.jcv.2014.09.005
Risk Factors for Severe Hand-Foot-Mouth Disease in Children in Hainan, China, 2011-2012, Asia Pacific Journal of Public Health, vol.85, issue.7, pp.715-722, 2011. ,
DOI : 10.1017/S0007114511006891
Workshop on Use of Intravenous Immunoglobulin in Hand, Foot and Mouth Disease in Southeast Asia, Emerging Infectious Diseases, vol.21, issue.1, pp.10-3201, 2015. ,
DOI : 10.3201/eid2101.140992
Co-detection in the pathogenesis of severe hand-foot-mouth disease, Genetic characterization of human enterovirus 71 in Cambodia V Duong et al Emerging Microbes & Infections 74, pp.2219-2222, 2012. ,
DOI : 10.1046/j.1440-1754.2001.00596.x
Complete Genome Analysis of the C4 Subgenotype Strains of Enterovirus 71: Predominant Recombination C4 Viruses Persistently Circulating in China for 14 Years, PLoS ONE, vol.73, issue.2, p.56341, 2013. ,
DOI : 10.1371/journal.pone.0056341.s004
Emergence of enterovirus 71 ???double-recombinant??? strains belonging to a novel genotype D originating from southern China: first evidence for combination of intratypic and intertypic recombination events in EV71, Archives of Virology, vol.44, issue.3, pp.1413-1424, 2010. ,
DOI : 10.1016/j.jcv.2009.02.002
Complete genome sequence analysis of enterovirus 71 isolated from children with hand, foot, and mouth disease in Thailand, Virus Genes, vol.51, pp.2012-2014, 2015. ,
Enterovirus genotypes causing hand foot and mouth disease in Shanghai, China: a molecular epidemiological analysis, BMC Infectious Diseases, vol.17, issue.1, pp.489-959, 2011. ,
DOI : 10.1046/j.1525-1470.2000.01702.x
The Epidemiological Study of Coxsackievirus A6 revealing Hand, Foot and Mouth Disease Epidemic patterns in Guangdong, China, Scientific Reports, vol.30, issue.1, p.10550, 2015. ,
DOI : 10.1093/molbev/mst197
Characterization of severe hand, foot, and mouth disease in Shenzhen, China, 2009-2013, Journal of Medical Virology, vol.24, issue.9, pp.1471-1479, 2009. ,
DOI : 10.1016/j.jcv.2009.02.002
Emergence, Circulation, and Spatiotemporal Phylogenetic Analysis of Coxsackievirus A6- and Coxsackievirus A10-Associated Hand, Foot, and Mouth Disease Infections from 2008 to 2012 in Shenzhen, China, Journal of Clinical Microbiology, vol.51, issue.11, pp.3560-3566, 2008. ,
DOI : 10.1128/JCM.01231-13
Circulation of Coxsackievirus A6 in hand-foot-mouth disease in Guangzhou, Virol J, vol.11, pp.2010-2012, 2014. ,
Hand, Foot, and Mouth Disease Caused by Coxsackievirus A6, Thailand, 2012, Emerging Infectious Diseases, vol.19, issue.4, pp.641-643, 2013. ,
DOI : 10.3201/eid1904.121666
Molecular epidemiology of HFMD-associated pathogen coxsackievirus A6 in Fujian Province, Bing Du Xue Bao, vol.30, pp.2011-2013, 2014. ,
Detection and characterization of viruses causing hand, foot and mouth disease from children in Seri Kembangan, Malaysia, Trop Biomed, vol.31, pp.654-662, 2014. ,
Coxsackievirus A6: a new emerging pathogen causing hand, foot and mouth disease outbreaks worldwide, Expert Review of Anti-infective Therapy, vol.27, issue.4, pp.1061-1071, 2015. ,
DOI : 10.1016/j.micinf.2014.11.004