M. Linial, Sensitive assays for simian foamy viruses reveal a high prevalence of 371 infection in commensal, free-ranging Asian monkeys, J Virol, vol.81, issue.44, pp.7330-7337, 2007.

P. Telfer, P. Marx, A. Gessain, and M. Kazanji, Two distinct variants of simian foamy, p.18, 2010.
URL : https://hal.archives-ouvertes.fr/inserm-00663869

F. Buseyne, P. Afonso, and A. Gessain, Cocirculation of Two env Molecular Variants, 378 of Possible Recombinant Origin, in Gorilla and Chimpanzee Simian Foamy Virus Strains 379 from Central Africa, J Virol, vol.89, pp.12480-12491, 2015.

R. Yoshikawa, S. Nakagawa, M. Okamoto, and T. Miyazawa, Construction of an infectious clone of simian foamy virus of Japanese macaque (SFVjm) and phylogenetic analyses of SFVjm isolates, Gene, vol.548, issue.1, pp.149-154, 2014.
DOI : 10.1016/j.gene.2014.07.025

K. Crooks, S. Vandewoude, and M. Löchelt, Complete genome sequences of two 385 novel Puma concolor foamy viruses from California, Genome Announc, vol.1, pp.20112-386, 2013.

T. Hechler, M. Materniak, T. Kehl, J. Kuzmak, and M. Löchelt, Complete Genome Sequences of Two Novel European Clade Bovine Foamy Viruses from Germany and Poland, Journal of Virology, vol.86, issue.19, pp.10905-10906, 2012.
DOI : 10.1128/JVI.01875-12

R. Rustigian, P. Johnston, and H. Reihart, Infection of Monkey Kidney Tissue Cultures with Virus-Like Agents., Experimental Biology and Medicine, vol.88, issue.1, pp.8-16, 1955.
DOI : 10.3181/00379727-88-21478

F. Fenner, Title Page / Table of Contents, Intervirology, vol.7, issue.1-2, pp.1-115, 1976.
DOI : 10.1159/000149938

R. Matthews, M. Essex, R. Gallo, and T. Graf, Classification and nomenclature of viruses Third Report of the 394 International Committee on Taxonomy of Viruses, Intervirology, vol.12, pp.131-296, 1979.

A. Vienna, J. Coffin, M. Essex, R. Gallo, T. Graf et al., 401 53, p.402

P. Sonigo and J. Stoye, Family Retroviridae, pp.369-387, 2000.

M. Linial, Foamy viruses are unconventional retroviruses, J Virol, vol.73, issue.414, pp.1747-1755, 1999.

J. Stoye and M. Tristem, Family Retroviridae, In Fauquet CM, pp.421-440, 2005.

A. Rethwilm, M. M. Tristem, E. B. Carstens, and E. J. Lefkowitz, Family Retroviridae, Virus taxonomy?Ninth Report of the 422, pp.477-494, 2012.

L. Fedullo, A. Santos, M. Soares, and W. Switzer, An expanded search for 426 simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV 427 lineages and host age-related infections, Retrovirology, vol.12, issue.428, pp.94-59, 2015.

M. Löchelt and J. Ku?mak, Tenth International Foamy Virus Conference 2014-- 430 achievements and perspectives, Viruses, vol.7, pp.1651-1666, 2015.

A. Khan, Eleventh International Foamy Virus Conference-Meeting Report, Viruses, vol.434, issue.435, pp.318-61, 2016.
URL : https://hal.archives-ouvertes.fr/pasteur-01412657

K. Sakai, Y. Ami, Y. Suzaki, and T. Matano, First complete genome sequence of a 436 simian foamy virus isolate from a cynomolgus macaque, Genome Announc, vol.4, issue.437, pp.62-439, 2016.

F. Zerbini, Consensus statement: Virus taxonomy in the age of metagenomics, p.442, 2017.

C. Hedemann, P. Formenty, S. Jensen, C. Boesch, and S. Junglen, Interspecies 445 transmission of simian foamy virus in a natural predator-prey system, J Virol, vol.82, issue.447, pp.7741-446, 2008.

T. Galvin, I. Ahmed, M. Shahabuddin, T. Bryan, and A. Khan, Identification of 448 recombination in the envelope gene of simian foamy virus serotype 2 isolated from 449, 2013.

R. Renshaw and J. Casey, Transcriptional mapping of the 3' end of the bovine 451 syncytial virus genome, J Virol, vol.68, pp.1021-1028, 1994.

J. Bodem, M. Lochelt, I. Winkler, R. Flower, H. Delius et al., 453 Characterization of the spliced pol transcript of feline foamy virus: the splice acceptor 454 site of the pol transcript is located in gag of foamy viruses, J Virol, vol.70, issue.455, pp.9024-9027, 1996.

D. Harbour, Characterization of the genome of feline foamy virus and its proteins shows 457 distinct features different from those of primate spumaviruses Comparison of the complete sequence of feline 459 spumavirus with those of the primate spumaviruses reveals a shorter gag gene, J Virol J Gen, vol.71, pp.6727-6741, 1997.

F. Dutilleul, B. Gicquel, S. Zientara, M. Giron, H. De-thé et al., Isolation and 463 characterization of an equine foamy virus, J Virol, vol.74, pp.4064-4073, 2000.

L. Thumer, A. Rethwilm, E. Holmes, and J. Bodem, The complete nucleotide sequence of a New World simian foamy virus, Virology, vol.369, issue.1, pp.191-197, 2007.
DOI : 10.1016/j.virol.2007.07.018

B. Pacheco, A. Finzi, K. Mcgee-estrada, and J. Sodroski, Species-Specific Inhibition of Foamy Viruses from South American Monkeys by New World Monkey TRIM5?? Proteins, Journal of Virology, vol.84, issue.8, pp.4095-4099, 2010.
DOI : 10.1128/JVI.02631-09

T. Wagner and J. Bodem, Sequence errors in foamy virus sequences in the GenBank 470 database: resequencing of the prototypic foamy virus proviral plasmids, Arch Virol, vol.471, pp.10-1007, 2016.

R. Rua, E. Betsem, S. Calattini, A. Saïb, and A. Gessain, Genetic Characterization of Simian Foamy Viruses Infecting Humans, Journal of Virology, vol.86, issue.24, pp.13350-13359, 2012.
DOI : 10.1128/JVI.01715-12

S. Nandakumar, E. Bae, and A. Khan, Complete genome sequence of the African 484 green monkey simian foamy virus serotype 3 strain FV2014, p.78, 2017.

J. Kupiec, A. Kay, M. Hayat, R. Ravier, J. Périés et al., Sequence analysis of the simian foamy virus type 1 genome, Gene, vol.101, issue.2, pp.185-194, 1991.
DOI : 10.1016/0378-1119(91)90410-D

S. Nandakumar, E. Bae, and A. Khan, Complete genome sequence of a naturally 488 occurring simian foamy virus isolate from rhesus macaque (SFVmmu_K3T) Genome 489, 2017.