Regulatory RNAs in Bacteria, Cell, vol.136, issue.4, pp.615-628, 2009. ,
DOI : 10.1016/j.cell.2009.01.043
URL : https://doi.org/10.1016/j.cell.2009.01.043
RNA-mediated regulation in pathogenic bacteria. Cold Spring Harb Perspect Med 3:a010298. https, 2013. ,
DOI : 10.1101/cshperspect.a010298
URL : http://perspectivesinmedicine.cshlp.org/content/3/9/a010298.full.pdf
Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations, Cold Spring Harbor Perspectives in Biology, vol.3, issue.12, 2011. ,
DOI : 10.1101/cshperspect.a003798
URL : http://cshperspectives.cshlp.org/content/3/12/a003798.full.pdf
Hfq, Molecular Cell, vol.9, issue.1, pp.23-30, 2002. ,
DOI : 10.1016/S1097-2765(01)00436-1
Factor Fraction required for the Synthesis of Bacteriophage Q??-RNA, Nature, vol.59, issue.5154, pp.588-590, 1968. ,
DOI : 10.1038/219588a0
Hfq: the flexible RNA matchmaker, Current Opinion in Microbiology, vol.30, pp.133-138, 2016. ,
DOI : 10.1016/j.mib.2016.02.003
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4821791/pdf
The role of Hfq in bacterial pathogens, Current Opinion in Microbiology, vol.13, issue.1, pp.24-33, 2010. ,
DOI : 10.1016/j.mib.2010.01.001
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12, Molecular Microbiology, vol.161, issue.1, pp.35-49, 1994. ,
DOI : 10.1007/BF00277109
Hfq and its constellation of RNA, Nature Reviews Microbiology, vol.385, issue.8, pp.578-589, 2011. ,
DOI : 10.1038/385176a0
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615618/pdf
Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq, PLoS Genetics, vol.13, issue.8, 2008. ,
DOI : 10.1371/journal.pgen.1000163.s013
The Single-Nucleotide Resolution Transcriptome of Pseudomonas aeruginosa Grown in Body Temperature, PLoS Pathogens, vol.8, issue.9, 2012. ,
DOI : 10.1371/journal.ppat.1002945.s011
Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs, PLOS Genetics, vol.62, issue.3, 2015. ,
DOI : 10.1371/journal.pgen.1005087.s023
and identifies growth phase-dependent regulated ncRNAs implicated in virulence, RNA Biology, vol.9, issue.4, pp.503-519, 2012. ,
DOI : 10.4161/rna.20270
URL : https://hal.archives-ouvertes.fr/pasteur-01338351
Small regulatory RNAs control the multi-cellular adhesive lifestyle of Escherichia coli, Molecular Microbiology, vol.9, issue.1, pp.36-50, 2012. ,
DOI : 10.1016/S1097-2765(01)00437-3
Discriminating tastes, RNA Biology, vol.72, issue.5, pp.766-770, 2011. ,
DOI : 10.1038/nmeth895
URL : http://www.tandfonline.com/doi/pdf/10.4161/rna.8.5.16024?needAccess=true
The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio harveyi and Vibrio cholerae, Cell, vol.118, issue.1, pp.69-82, 2004. ,
DOI : 10.1016/j.cell.2004.06.009
MicA sRNA links the PhoP regulon to cell envelope stress, Molecular Microbiology, vol.102, issue.2, pp.467-479, 2010. ,
DOI : 10.1128/jb.179.23.7476-7487.1997
URL : https://hal.archives-ouvertes.fr/hal-00512637
The bacterial protein Hfq: much more than a mere RNA-binding factor, Critical Reviews in Microbiology, vol.41, issue.4, pp.276-299, 2012. ,
DOI : 10.1093/abbs/gmp060
Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity, Nature Genetics, vol.20, issue.11, pp.1165-1173, 2004. ,
DOI : 10.1093/bioinformatics/btg490
The Hfq Homolog in Legionella pneumophila Demonstrates Regulation by LetA and RpoS and Interacts with the Global Regulator CsrA, Journal of Bacteriology, vol.187, issue.4, pp.1527-1532, 2005. ,
DOI : 10.1128/JB.187.4.1527-1532.2005
Differentiate to thrive: lessons from the Legionella pneumophila life cycle, Molecular Microbiology, vol.184, issue.1, pp.29-40, 2004. ,
DOI : 10.1128/jb.179.14.4639-4642.1997
The Legionella pneumophila LetA/LetS Two-Component System Exhibits Rheostat-Like Behavior, Infection and Immunity, vol.78, issue.6, pp.2571-2583, 2010. ,
DOI : 10.1128/IAI.01107-09
URL : http://iai.asm.org/content/78/6/2571.full.pdf
A two-component regulator induces the transmission phenotype of stationary-phase Legionella pneumophila, Molecular Microbiology, vol.273, issue.1, pp.107-118, 2002. ,
DOI : 10.1126/science.273.5279.1234
The response regulator LetA regulates the stationary-phase stress response in Legionella pneumophila and is required for efficient infection of Acanthamoeba castellanii, FEMS Microbiology Letters, vol.97, issue.2, pp.241-248, 2003. ,
DOI : 10.1016/S1438-4221(00)80121-6
Overexpresssion of a homologue of the regulator affects cell size, flagellation, and pigmentation, International Journal of Medical Microbiology, vol.291, issue.5, pp.353-3601438, 2001. ,
DOI : 10.1078/1438-4221-00141
Legionella pneumophila CsrA is a pivotal repressor of transmission traits and activator of replication, Molecular Microbiology, vol.184, issue.2, pp.445-461, 2003. ,
DOI : 10.1128/jb.178.4.1012-1017.1996
Icm/Dot effectors, Molecular Microbiology, vol.76, issue.4, pp.995-1010, 2009. ,
DOI : 10.1111/j.1365-2958.2007.06042.x
Legionella pneumophila pangenome reveals strain-specific virulence factors, BMC Genomics, vol.11, issue.181, 2010. ,
Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes, BMC Genomics, vol.16, issue.7, pp.5361471-2164, 2011. ,
DOI : 10.1093/bioinformatics/16.7.573
URL : https://hal.archives-ouvertes.fr/pasteur-00642457
Legionella pneumophila Strain 130b Possesses a Unique Combination of Type IV Secretion Systems and Novel Dot/Icm Secretion System Effector Proteins, Journal of Bacteriology, vol.192, issue.22, pp.6001-6016, 2010. ,
DOI : 10.1128/JB.00778-10
have emerged recently and independently, Genome Research, vol.26, issue.11, pp.1555-1564, 2016. ,
DOI : 10.1101/gr.209536.116
URL : http://genome.cshlp.org/content/26/11/1555.full.pdf
Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease, Genome Biol, vol.15, p.505, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01329875
Analysis of the transcriptome of Legionella pneumophila hfq mutant reveals a new mobile genetic element, Microbiology, vol.159, issue.Pt_8, pp.1649-1660, 2013. ,
DOI : 10.1099/mic.0.067983-0
Identification of novel loci involved in entry by Legionella pneumophila, Microbiology, vol.146, issue.6, pp.1345-135900221287, 2000. ,
DOI : 10.1099/00221287-146-6-1345
Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Research, vol.31, issue.13, pp.3406-3415, 2003. ,
DOI : 10.1093/nar/gkg595
URL : https://academic.oup.com/nar/article-pdf/31/13/3406/9487491/gkg595.pdf
Identification of small Hfq-binding RNAs in Listeria monocytogenes, RNA, vol.12, issue.7, pp.1383-1396, 2006. ,
DOI : 10.1261/rna.49706
Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila, Cellular Microbiology, vol.22, issue.8, pp.1228-1240, 2006. ,
DOI : 10.1093/nar/30.4.e15
Bacterial virulence and Fis: adapting regulatory networks to the host environment, Trends in Microbiology, vol.22, issue.2, pp.92-99, 2014. ,
DOI : 10.1016/j.tim.2013.11.008
The functional Hfq-binding module of bacterial sRNAs consists of a double or single hairpin preceded by a U-rich sequence and followed by a 3' poly(U) tail, RNA, vol.18, issue.5, pp.1062-1074, 2012. ,
DOI : 10.1261/rna.031575.111
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition, Proceedings of the National Academy of Sciences, vol.39, issue.suppl_1, pp.9396-9401, 2012. ,
DOI : 10.1093/nar/gkq1129
Translational autocontrol of the Escherichia coli hfq RNA chaperone gene, RNA, vol.11, issue.6, pp.976-984, 2005. ,
DOI : 10.1261/rna.2360205
Two Fis Regulators Directly Repress the Expression of Numerous Effector-Encoding Genes in Legionella pneumophila, Journal of Bacteriology, vol.196, issue.23, pp.4172-418302017, 2014. ,
DOI : 10.1128/JB.02017-14
Charcoal-yeast extract agar: primary isolation medium for Legionella pneumophila, J Clin Microbiol, vol.10, pp.437-441, 1979. ,
Transcriptional profiling of Legionella pneumophila biofilm cells and the influence of iron on biofilm formation, Microbiology, vol.154, issue.1, pp.30-41008698, 2007. ,
DOI : 10.1099/mic.0.2007/008698-0
Induction of Competence for Natural Transformation in Legionella pneumophila and Exploitation for Mutant Construction, Methods Mol Biol, vol.954, pp.183-195, 2013. ,
DOI : 10.1007/978-1-62703-161-5_9
URL : https://hal.archives-ouvertes.fr/pasteur-01334089
, localizes to the replicative vacuole and binds to the bacterial effector LpnE, Cellular Microbiology, vol.92, issue.3, pp.442-460, 2009. ,
DOI : 10.1177/002215540004800203
S1P-lyase targets host sphingolipid metabolism and restrains autophagy, Proceedings of the National Academy of Sciences, vol.4, issue.5, pp.1901-1906, 2016. ,
DOI : 10.1111/j.1462-5822.2010.01432.x
URL : https://hal.archives-ouvertes.fr/hal-01376135
Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA, Molecular Microbiology, vol.171, issue.23, pp.1613-1625, 2003. ,
DOI : 10.1128/jb.171.5.2795-2802.1989
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation, Nucleic Acids Research, vol.30, issue.4, 2002. ,
DOI : 10.1093/nar/30.4.e15
URL : https://academic.oup.com/nar/article-pdf/30/4/e15/9901208/3000e15.pdf
VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data, Bioinformatics, vol.8, issue.6, pp.502-508, 2005. ,
DOI : 10.1089/106652701753307520
URL : https://hal.archives-ouvertes.fr/hal-00126119
Identifying differentially expressed genes using false discovery rate controlling procedures, Bioinformatics, vol.19, issue.3, pp.368-375, 2003. ,
DOI : 10.1093/bioinformatics/btf877
URL : https://academic.oup.com/bioinformatics/article-pdf/19/3/368/717620/btf877.pdf
Legionella pneumophila Effector RomA Uniquely Modifies Host Chromatin to Repress Gene Expression and Promote Intracellular Bacterial Replication, Cell Host & Microbe, vol.13, issue.4, pp.395-405, 2013. ,
DOI : 10.1016/j.chom.2013.03.004
URL : https://hal.archives-ouvertes.fr/pasteur-01336636
Legionella pneumophila Exploits PI(4)P to Anchor Secreted Effector Proteins to the Replicative Vacuole, PLoS Pathogens, vol.115, issue.5, p.46, 2006. ,
DOI : 10.1371/journal.ppat.0020046.st002
URL : https://doi.org/10.1371/journal.ppat.0020046