M. Greger, The Human/Animal Interface: Emergence and Resurgence of Zoonotic Infectious Diseases, Critical Reviews in Microbiology, vol.5, issue.18, pp.243-299, 2007.
DOI : 10.1111/j.1348-0421.1992.tb02109.x

M. Woolhouse and E. Gaunt, Ecological Origins of Novel Human Pathogens, Critical Reviews in Microbiology, vol.292, issue.6, pp.231-242, 2007.
DOI : 10.1126/science.1059026

D. Bell, S. Roberton, and P. Hunter, Animal origins of SARS coronavirus: possible links with the international trade in small carnivores, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.359, issue.1447, pp.1107-1114, 2004.
DOI : 10.1098/rstb.2004.1492

P. Calistri, A. Giovannini, Z. Hubalek, A. Ionescu, and F. Monaco, Epidemiology of West Nile in Europe and in the Mediterranean Basin, The Open Virology Journal, vol.4, issue.1, pp.10-2174, 2010.
DOI : 10.2174/1874357901004010029

E. Leroy, B. Kumulungui, X. Pourrut, P. Rouquet, and A. Hassanin, Fruit bats as reservoirs of Ebola virus, Nature, vol.357, issue.7068, pp.575-576, 2005.
DOI : 10.1099/0022-1317-81-8-1927

J. Gog, R. Woodroffe, and J. Swinton, Disease in endangered metapopulations: the importance of alternative hosts, Proceedings of the Royal Society of London Series B: Biological Sciences, pp.671-676, 2002.
DOI : 10.1098/rspb.2001.1667

K. Lafferty and L. Gerber, Good Medicine for Conservation Biology: the Intersection of Epidemiology and Conservation Theory, Conservation Biology, vol.88, issue.3, pp.593-604, 2002.
DOI : 10.1017/S1367943099000517

A. Dobson and M. Meagher, The Population Dynamics of Brucellosis in the Yellowstone National Park, Ecology, vol.77, issue.4, pp.1026-1036, 1996.
DOI : 10.2307/2265573

R. Hedrick, M. Adkison, M. El-matbouli, and E. Macconnell, Whirling disease: re-emergence among wild trout, Immunological Reviews, vol.40, issue.1, pp.365-376, 1998.
DOI : 10.1577/1548-8667(1992)004<0044:EIWDID>2.3.CO;2

J. Kiesecker, A. Blaustein, and C. Miller, Transfer of a Pathogen from Fish to Amphibians, Conservation Biology, vol.15, issue.4, pp.1064-1070, 2001.
DOI : 10.2307/2403930

N. Navarro-gonzalez, E. Serrano, C. Âaz, E. Velarde, R. Marco et al., Game restocking and the introduction of sarcoptic mange in wild rabbit in north-eastern Spain, Animal Conservation, vol.12, issue.6, pp.586-591, 2010.
DOI : 10.1007/978-0-387-45972-1

K. Viggers, D. Lindenmayer, and D. Spratt, The Importance of Disease in Reintroduction Programmes., Wildlife Research, vol.20, issue.5, pp.687-698, 1993.
DOI : 10.1071/WR9930687

D. Villanua, L. Perez-rodriguez, F. Casas, V. Alzaga, and P. Acevedo, Sanitary risks of red-legged partridge releases: introduction of parasites, European Journal of Wildlife Research, vol.48, issue.1, 2008.
DOI : 10.1136/vr.154.2.49

J. Champagnon, J. Elmberg, M. Guillemain, M. Gauthier-clerc, and J. Lebreton, Conspecifics can be aliens too: A review of effects of restocking practices in vertebrates, Journal for Nature Conservation, vol.20, issue.4, pp.231-241, 2012.
DOI : 10.1016/j.jnc.2012.02.002

L. Laikre, M. Schwartz, R. Waples, and N. Ryman, Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals. Trends in ecology & evolution 25, pp.520-529, 2010.

J. Mondain-monval and O. Girard, Le Canard Colvert, la Sarcelle d'Hiver & autres canards de surface, Faune Sauvage, vol.251, pp.124-139, 2000.

B. Deceuninck and C. Fouque, Canards de Ânombre Âs en France en hiver: importance des zones humides et tendances. Ornithos, pp.266-283, 2010.

J. Mondain-monval, A. Olivier, L. Bihan, and A. , Recent trends in the number of hunters and the harvest of wildfowl in the Camargue, France: preliminary results, 2009.

R. Mathevet, M. Âard, and F. , The origins and functioning of the private wildfowling lease system in a major Mediterranean wetland: the Camargue (Rhone river delta, southern France), Land Use Policy, vol.19, issue.4, pp.277-286, 2002.
DOI : 10.1016/S0264-8377(02)00025-X

J. Champagnon, M. Guillemain, M. Gauthier-clerc, J. Lebreton, and J. Elmberg, Consequences of massive bird releases for hunting purposes: Mallard Anas platyrhynchos in the Camargue, southern France, Wildfowl, vol.2, pp.184-191, 2009.

E. Jourdain, M. Gauthier-clerc, D. Bicout, and P. Sabatier, Bird Migration Routes and Risk for Pathogen Dispersion into Western Mediterranean Wetlands, Emerging Infectious Diseases, vol.13, issue.3, pp.365-372, 2007.
DOI : 10.3201/eid1303.060301
URL : https://wwwnc.cdc.gov/eid/article/13/3/pdfs/06-0301.pdf

R. Fouchier, V. Munster, A. Wallensten, T. Bestebroer, and S. Herfst, Characterization of a Novel Influenza A Virus Hemagglutinin Subtype (H16) Obtained from Black-Headed Gulls, Journal of Virology, vol.79, issue.5, pp.2814-2822, 2005.
DOI : 10.1128/JVI.79.5.2814-2822.2005

R. Webster, W. Bean, O. Gorman, T. Chambers, and Y. Kawaoka, Evolution and ecology of influenza A viruses, Microbiology and Molecular Biology Reviews, vol.56, pp.152-179, 1992.

R. Webster, Influenza: An Emerging Disease, Emerging Infectious Diseases, vol.4, issue.3, pp.436-441, 1998.
DOI : 10.3201/eid0403.980325
URL : https://wwwnc.cdc.gov/eid/pdfs/vol23no9_pdf-version.pdf

D. Alexander, A review of avian influenza in different bird species, Veterinary Microbiology, vol.74, issue.1-2, 2000.
DOI : 10.1016/S0378-1135(00)00160-7

N. Latorre-margalef, G. Gunnarsson, V. Munster, R. Fouchier, and A. Osterhaus, Effects of influenza A virus infection on migrating mallard ducks, Proceedings of the Royal Society B: Biological Sciences, vol.56, issue.1, 2009.
DOI : 10.3201/eid1308.070319

R. Velarde, S. Calvin, D. Ojkic, I. Barker, and E. Nagy, Avian Influenza Virus H13 Circulating in Ring-Billed Gulls (Larus delawarensis) in Southern Ontario, Canada, Avian Diseases, vol.54, issue.s1, pp.411-419, 2010.
DOI : 10.1637/8808-040109-Reg.1

J. Van-gils, V. Munster, R. Radersma, D. Liefhebber, and R. Fouchier, Hampered Foraging and Migratory Performance in Swans Infected with Low-Pathogenic Avian Influenza A Virus, PLoS ONE, vol.18, issue.1, 2007.
DOI : 10.1371/journal.pone.0000184.g004

T. Ito, H. Goto, E. Yamamoto, H. Tanaka, and M. Takeuchi, Generation of a highly pathogenic avian influenza A virus from an avirulent field isolate by passaging in chickens) Persistence of highly pathogenic avian influenza viruses in natural ecosystems, J Virol Emerg Infect Dis Available, vol.75, issue.16, 2001.

C. Lebarbenchon, C. Chang, V. Grandhomme, M. Dietrich, and Y. Kayser, Avian Influenza Circulation in the Camargue (South of France) During the 2006???07 Season, Avian Diseases, vol.54, issue.s1, pp.446-449, 2010.
DOI : 10.1637/8665-022509-ResNote.1

D. Stallknecht and J. Brown, Wild birds and the epidemiology of avian influenza, Journal of Wildlife Diseases, vol.43, pp.15-20, 2007.

J. Keawcharoen, D. Van-riel, G. Van-amerongen, T. Bestebroer, and W. Beyer, Wild Ducks as Long-Distance Vectors of Highly Pathogenic Avian Influenza Virus (H5N1), Emerging Infectious Diseases, vol.14, issue.4, pp.600-607, 2008.
DOI : 10.3201/eid1404.071016

D. Âaz-sa-Ânchez, S. Moriones, A. Casas, F. , H. Èfle et al., Prevalence of Escherichia coli, Salmonella sp. and Campylobacter sp. in the intestinal flora of farmreared , restocked and wild red-legged partridges (Alectoris rufa): is restocking using farm-reared birds a risk? European journal of wildlife research 58, pp.99-105, 2012.

J. Champagnon, Consequences of massive bird releases for hunting purposes, the Mallard Anas platyrhynchos Available, 2011.

S. Byers and J. Cary, Discrimination of Mallard Strains on the Basis of Morphology, The Journal of Wildlife Management, vol.55, issue.4, pp.580-586, 1991.
DOI : 10.2307/3809502

Y. Watanabe, M. Ibrahim, H. Ellakany, N. Kawashita, and R. Mizuike, Acquisition of Human-Type Receptor Binding Specificity by New H5N1 Influenza Virus Sublineages during Their Emergence in Birds in Egypt, PLoS Pathogens, vol.48, issue.5, p.1002068, 2011.
DOI : 10.1371/journal.ppat.1002068.s009

G. Orozovic, K. Orozovic, J. Lennerstrand, and B. Olsen, Detection of Resistance Mutations to Antivirals Oseltamivir and Zanamivir in Avian Influenza A Viruses Isolated from Wild Birds, PLoS ONE, vol.1, issue.1, p.16028, 2011.
DOI : 10.1371/journal.pone.0016028.s001

L. Alvarado-de, C. Barrera, R. Ân, and G. , Influenza: Forecast for a pandemic. Archives of medical research 36, pp.628-636, 2005.

L. Campitelli, D. Martino, A. Spagnolo, D. Smith, G. et al., Molecular analysis of avian H7 influenza viruses circulating in Eurasia in 1999-2005: detection of multiple reassortant virus genotypes, Journal of General Virology, vol.89, issue.1, pp.48-59, 1999.
DOI : 10.1099/vir.0.83111-0

B. Olsen, V. Munster, A. Wallensten, J. Waldenstrom, and A. Osterhaus, Global Patterns of Influenza A Virus in Wild Birds, Science, vol.29, issue.4, pp.384-388, 2006.
DOI : 10.7589/0090-3558-29.4.568

J. Siembieda, C. Johnson, C. Cardona, N. Anchell, and N. Dao, Influenza A Viruses in Wild Birds of the Pacific Flyway, 2005???2008, Vector-Borne and Zoonotic Diseases, vol.10, issue.8, pp.793-800, 2010.
DOI : 10.1089/vbz.2009.0095

G. Gunnarsson, J. Elmberg, S. Èberg, K. , P. Èysa et al., Experimental evidence for density-dependent survival in mallard (Anas platyrhynchos) ducklings, Oecologia, vol.61, issue.2, pp.203-213, 2006.
DOI : 10.1080/00063659909477239

H. Ânaux, V. Samuel, and M. , Avian influenza shedding patterns in waterfowl: implications for surveillance, environmental transmission, and disease spread, Journal of Wildlife Diseases, vol.47, pp.566-578, 2011.

E. Jourdain, G. Gunnarsson, J. Wahlgren, N. Latorre-margalef, B. Èjer et al., Influenza Virus in a Natural Host, the Mallard: Experimental Infection Data, PLoS ONE, vol.5, issue.1, 2010.
DOI : 10.1371/journal.pone.0008935.s002

H. Lu and A. Castro, Evaluation of the Infectivity, Length of Infection, and Immune Response of a Low-Pathogenicity H7N2 Avian Influenza Virus in Specific-Pathogen-Free Chickens, Avian Diseases, vol.48, issue.2, pp.263-270, 2004.
DOI : 10.1637/7064

J. Champagnon, M. Guillemain, J. Elmberg, G. Massez, and F. Cavallo, Low survival after release into the wild: assessing ???the burden of captivity??? on Mallard physiology and behaviour, European Journal of Wildlife Research, vol.86, issue.1, pp.255-267, 2012.
DOI : 10.2307/1366830

K. Handberg, O. Therkildsen, and P. Jùrgensen, Genetic Analysis of Avian Influenza Virus from Wild Birds and Mallards Reared for Shooting in Denmark, Avian Diseases, vol.54, issue.s1, pp.420-425, 2010.
DOI : 10.1637/8746-032709-Reg.1

Z. Szeleczky, B. Âlint, A. Â. Gyarmati, P. Metreveli, G. et al., Characterization of two low pathogenic avian influenza viruses isolated in Hungary in 2007, Veterinary Microbiology, vol.145, issue.1-2, pp.142-147, 2007.
DOI : 10.1016/j.vetmic.2010.03.008

C. Lebarbenchon, S. Van-der-werf, F. Thomas, J. Aubin, and S. Azebi, Absence of detection of highly pathogenic H5N1 in migratory waterfowl in southern France in 2005???2006, Infection, Genetics and Evolution, vol.7, issue.5, pp.604-608, 2007.
DOI : 10.1016/j.meegid.2007.05.009
URL : https://hal.archives-ouvertes.fr/hal-00167805

K. Slota, A. Hill, T. Keefe, R. Bowen, and R. Miller, Human???Bird Interactions in the United States Upland Gamebird Industry and the Potential for Zoonotic Disease Transmission, Vector-Borne and Zoonotic Diseases, vol.11, issue.8, pp.1115-1123, 2011.
DOI : 10.1089/vbz.2010.0114

. French, Note de service DGAL/ SDSPA/N2006±8163 du 26 Ministe Áre de l'Alimentation, de l'Agriculture et de la Pe Ãche, Available, 2006.

X. Duval, S. Van-der-werf, T. Blanchon, A. Mosnier, and M. Bouscambert-duchamp, Efficacy of Oseltamivir-Zanamivir Combination Compared to Each Monotherapy for Seasonal Influenza: A Randomized Placebo-Controlled Trial, PLoS Medicine, vol.7, pp.537-545, 2010.
URL : https://hal.archives-ouvertes.fr/inserm-00701161

A. Gall, B. Hoffmann, T. Harder, C. Grund, and M. Beer, Universal Primer Set for Amplification and Sequencing of HA0 Cleavage Sites of All Influenza A Viruses, Journal of Clinical Microbiology, vol.46, issue.8, pp.2561-2567, 2008.
DOI : 10.1128/JCM.00466-08

T. Keane, C. Creevey, M. Pentony, T. Naughton, and J. Mclnerney, Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified, BMC Evolutionary Biology, vol.6, issue.1, p.29, 2006.
DOI : 10.1186/1471-2148-6-29

B. Crescenzo-chaigne, S. Van-der-werf, and N. Naffakh, Differential Effect of Nucleotide Substitutions in the 3??? Arm of the Influenza A Virus vRNA Promoter on Transcription/Replication by Avian and Human Polymerase Complexes Is Related to the Nature of PB2 Amino Acid 627, Virology, vol.303, issue.2, pp.240-252, 2002.
DOI : 10.1006/viro.2002.1637

D. Senne, B. Panigrahy, Y. Kawaoka, J. Pearson, S. Èss et al., Survey of the Hemagglutinin (HA) Cleavage Site Sequence of H5 and H7 Avian Influenza Viruses: Amino Acid Sequence at the HA Cleavage Site as a Marker of Pathogenicity Potential, Avian Diseases, vol.40, issue.2, pp.425-437, 1996.
DOI : 10.2307/1592241

M. Matrosovich, A. Gambaryan, S. Teneberg, V. Piskarev, and S. Yamnikova, Avian Influenza A Viruses Differ from Human Viruses by Recognition of Sialyloligosaccharides and Gangliosides and by a Higher Conservation of the HA Receptor-Binding Site, Virology, vol.233, issue.1, pp.224-234, 1997.
DOI : 10.1006/viro.1997.8580

U. Aamir, U. Wernery, N. Ilyushina, and R. Webster, Characterization of avian H9N2 influenza viruses from United Arab Emirates 2000 to 2003, Virology, vol.361, issue.1, pp.45-55, 2000.
DOI : 10.1016/j.virol.2006.10.037

D. Kobasa, M. Rodgers, K. Wells, and Y. Kawaoka, Neuraminidase hemadsorption activity, conserved in avian influenza A viruses, does not influence viral replication in ducks, Journal of virology, vol.71, pp.6706-6713, 1997.

J. Varghese, P. Colman, A. Van-donkelaar, T. Blick, and A. Sahasrabudhe, Structural evidence for a second sialic acid binding site in avian influenza virus neuraminidases, Proceedings of the National Academy of Sciences, vol.24, issue.4, pp.11808-11812, 1997.
DOI : 10.1107/S0021889891004399

D. Kobasa, S. Kodihalli, M. Luo, M. Castrucci, and I. Donatelli, Amino acid residues contributing to the substrate specificity of the influenza A virus neuraminidase, Journal of virology, vol.73, pp.6743-6751, 1999.

Z. Li, H. Chen, P. Jiao, G. Deng, and G. Tian, Molecular Basis of Replication of Duck H5N1 Influenza Viruses in a Mammalian Mouse Model, Journal of Virology, vol.79, issue.18, pp.12058-12064, 2005.
DOI : 10.1128/JVI.79.18.12058-12064.2005

E. Subbarao, W. London, and B. Murphy, A single amino acid in the PB2 gene of influenza A virus is a determinant of host range, Journal of Virology, vol.67, pp.1761-1764, 1993.

M. Hatta, P. Gao, P. Halfmann, and Y. Kawaoka, Molecular Basis for High Virulence of Hong Kong H5N1 Influenza A Viruses, Science, vol.293, issue.5536, pp.1840-1842, 2001.
DOI : 10.1126/science.1062882

S. Seo, E. Hoffmann, and R. Webster, Lethal H5N1 influenza viruses escape host anti-viral cytokine responses, Nature Medicine, vol.8, issue.9, pp.950-954
DOI : 10.1128/MCB.8.10.4518

Z. Li, Y. Jiang, P. Jiao, A. Wang, and F. Zhao, The NS1 Gene Contributes to the Virulence of H5N1 Avian Influenza Viruses, Journal of Virology, vol.80, issue.22, pp.11115-11123, 2006.
DOI : 10.1128/JVI.00993-06

J. Obenauer, J. Denson, P. Mehta, X. Su, and S. Mukatira, Large-Scale Sequence Analysis of Avian Influenza Isolates, Science, vol.311, issue.5767, pp.1576-1580, 2006.
DOI : 10.1126/science.1121586
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.475.6047

Y. Huang, B. Hu, X. Wen, S. Cao, and D. Xu, Evolution analysis of the matrix (M) protein genes of 17 H9N2 chicken influenza viruses isolated in northern China during 1998???2008, Virus Genes, vol.77, issue.3, pp.398-403, 2009.
DOI : 10.1007/s11262-009-0339-0

C. Cheung, J. Rayner, G. Smith, P. Wang, and T. Naipospos, Distribution of Amantadine???Resistant H5N1 Avian Influenza Variants in Asia, The Journal of Infectious Diseases, vol.193, issue.12, pp.1626-1629, 2006.
DOI : 10.1086/504723

C. Scholtissek, G. Quack, H. Klenk, and R. Webster, How to overcome resistance of influenza A viruses against adamantane derivatives, Antiviral Research, vol.37, issue.2, pp.83-95, 1998.
DOI : 10.1016/S0166-3542(97)00061-2