Generalizing the Hough transform to detect arbitrary shapes, Pattern Recognition, vol.13, issue.2, pp.111-122, 1981. ,
DOI : 10.1016/0031-3203(81)90009-1
The Orientation of Cell Divisions Determines the Shape of Drosophila Organs, Current Biology, vol.15, issue.18, pp.1640-1644, 2005. ,
DOI : 10.1016/j.cub.2005.07.062
The Role of Spatially Controlled Cell Proliferation in Limb Bud Morphogenesis, PLoS Biology, vol.5, issue.7, p.1000420, 2010. ,
DOI : 10.1371/journal.pbio.1000420.s012
The Centrosome in Cells and Organisms, Science, vol.108, issue.2, pp.422-426, 2012. ,
DOI : 10.1016/1047-8477(92)90011-X
Mechanical Control of Morphogenesis by Fat/Dachsous/Four-Jointed Planar Cell Polarity Pathway, Science, vol.27, issue.1, pp.724-727, 2012. ,
DOI : 10.1016/j.devcel.2010.11.007
Adaptive structure tensors and their applications Visualization and Processing of Tensor Fields, pp.17-47, 2006. ,
Active contours without edges, IEEE Transactions on Image Processing, vol.10, issue.2, pp.266-277, 2001. ,
DOI : 10.1109/83.902291
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.2.1828
Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, vol.9, issue.7, pp.690-696, 2012. ,
DOI : 10.1038/nmeth.1924
The Nonlinear Tensor Diffusion in Segmentation of Meaningful Biological Structures from Image Sequences of Zebrafish Embryogenesis, Lect. Notes Comput. Sci. LNCS, vol.31, issue.97, pp.63-74, 2009. ,
DOI : 10.1023/A:1008009714131
URL : https://hal.archives-ouvertes.fr/hal-00723371
Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces, IEEE Transactions on Image Processing, vol.14, issue.9, pp.1396-1410, 2005. ,
DOI : 10.1109/TIP.2005.852790
URL : https://hal.archives-ouvertes.fr/hal-00014483
3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy, IEEE Transactions on Image Processing, vol.20, issue.7, pp.1925-1937, 2011. ,
DOI : 10.1109/TIP.2010.2099125
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution, Nature Methods, vol.19, issue.7, pp.547-553, 2010. ,
DOI : 10.1145/321694.321699
URL : https://hal.archives-ouvertes.fr/hal-00521491
Planar cell polarity signaling controls cell division orientation during zebrafish gastrulation, PLoS Biol, vol.430, pp.689-693, 2004. ,
DOI : 10.1038/nature02796
Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy, Science, vol.305, issue.5686, pp.1007-1009, 2004. ,
DOI : 10.1126/science.1100035
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.456.2250
3D early embryogenesis image filtering by nonlinear partial differential equations, Medical Image Analysis, vol.14, issue.4, pp.510-526, 2010. ,
DOI : 10.1016/j.media.2010.03.003
URL : https://hal.archives-ouvertes.fr/hal-00502622
Localizing Region-Based Active Contours, IEEE Transactions on Image Processing, vol.17, issue.11, pp.2029-2039, 2008. ,
DOI : 10.1109/TIP.2008.2004611
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2796112
Quantitative analysis of polarity in 3D reveals local cell coordination in the embryonic mouse heart, Development, vol.140, issue.2, pp.395-404, 2013. ,
DOI : 10.1242/dev.087940
A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images, Cytometry Part A, vol.69, issue.9, pp.724-736, 2007. ,
DOI : 10.1007/978-0-387-45524-2_36
Sfrp Controls Apicobasal Polarity and Oriented Cell Division in Developing Gut Epithelium, PLoS Genetics, vol.39, issue.3, p.1000427, 2009. ,
DOI : 10.1371/journal.pgen.1000427.s013
URL : http://doi.org/10.1371/journal.pgen.1000427
Lighting up developmental mechanisms: how fluorescence imaging heralded a new era, Development, vol.137, issue.3, pp.373-387, 2010. ,
DOI : 10.1242/dev.031690
URL : https://hal.archives-ouvertes.fr/hal-00567137
In Toto Imaging of Embryogenesis with Confocal Time-Lapse Microscopy, Methods Mol. Biol, vol.546, pp.317-332, 2010. ,
DOI : 10.1007/978-1-60327-977-2_19
The behaviour of cells that form the myocardial compartments of the vertebrate heart (eds) Heart Development and Regeneration, 2010. ,
Anisotropic plate diffusion filtering for detection of cell membranes in 3D microscopy images, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp.588-591, 2010. ,
DOI : 10.1109/ISBI.2010.5490110
ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes, PLoS Computational Biology, vol.7, issue.329, p.1002780, 2012. ,
DOI : 10.1371/journal.pcbi.1002780.s007
Extraction of spots in biological images using multiscale products, Pattern Recognition, vol.35, issue.9, pp.1989-1996, 2002. ,
DOI : 10.1016/S0031-3203(01)00127-3
A Threshold Selection Method from Gray-Level Histograms, IEEE Transactions on Systems, Man, and Cybernetics, vol.9, issue.1, pp.62-66, 1979. ,
DOI : 10.1109/TSMC.1979.4310076
Scale-space and edge detection using anisotropic diffusion, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.12, issue.7, pp.629-639, 1990. ,
DOI : 10.1109/34.56205
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.108.2553
OpenSPIM: An open access Selective Plane Illumination Microscope for the observation of developing fruitfly and zebrafish embryos, Proceedings of the European Microscopy Congress, 2012. ,
Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy, 2011 18th IEEE International Conference on Image Processing, pp.2085-2088, 2011. ,
DOI : 10.1109/ICIP.2011.6115880
Software for bead-based registration of selective plane illumination microscopy data, Nature Methods, vol.7, issue.6, pp.418-419, 2010. ,
DOI : 10.1364/OE.15.008029
Loss of Fat4 disrupts PCP signaling and oriented cell division and leads to cystic kidney disease, Nature Genetics, vol.6, issue.8, pp.1010-1015, 2008. ,
DOI : 10.1038/sj.ki.5001534
Subjective surfaces: A method for completing missing boundaries, Proceedings of the National Academy of Sciences, vol.18, issue.6, pp.6258-6263, 2000. ,
DOI : 10.1109/42.781012
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC18589
Dynamic Analysis of Vascular Morphogenesis Using Transgenic Quail Embryos, PLoS ONE, vol.3, issue.9, p.12674, 2010. ,
DOI : 10.1371/journal.pone.0012674.s010
Two ways to use imaging: focusing directly on mechanism, or indirectly via behaviour?, Current Opinion in Genetics & Development, vol.21, issue.5, pp.523-539, 2011. ,
DOI : 10.1016/j.gde.2011.08.012
Flow coherence diffusion. Linear and nonlinear case, Lect. Notes Comput. Sci. LNCS, vol.3708, pp.316-322, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00400130
Regularised marching tetrahedra: improved iso-surface extraction, Computers & Graphics, vol.23, issue.4, pp.583-598, 1998. ,
DOI : 10.1016/S0097-8493(99)00076-X
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.29.9171
The application of a local dimensionality estimator to the analysis of 3d microscopic network structures, Proceedings of the Scandinavian Conference on Image Analysis, pp.447-455, 1999. ,
Coherence enhancing diffusion, International Journal of Computer Vision, vol.31, issue.2/3, pp.111-127, 1999. ,
DOI : 10.1023/A:1008009714131
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.35.5217
Learning to segment dense cell nuclei with shape prior, 2012 IEEE Conference on Computer Vision and Pattern Recognition, pp.1012-1018, 2012. ,
DOI : 10.1109/CVPR.2012.6247778
Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis, IEEE Transactions on Image Processing, vol.19, issue.3, pp.770-781, 2010. ,
DOI : 10.1109/TIP.2009.2033629
URL : https://hal.archives-ouvertes.fr/hal-00444516