A. Thorne, Australia's oldest human remains: age of the Lake Mungo 3 skeleton, Journal of Human Evolution, vol.36, issue.6, pp.591-612, 1999.
DOI : 10.1006/jhev.1999.0305

R. G. Roberts, The human colonisation of Australia: optical dates of 53,000 and 60,000 years bracket human arrival at Deaf Adder Gorge, Northern Territory, Quaternary Science Reviews, vol.13, issue.5-7, pp.575-583, 1994.
DOI : 10.1016/0277-3791(94)90080-9

O. Connell, J. F. Allen, and J. , The process, biotic impact, and global implications of the human colonization of Sahul about 47,000 years ago, Journal of Archaeological Science, vol.56, pp.73-84, 2015.
DOI : 10.1016/j.jas.2015.02.020

O. Connor and S. , Carpenter's Gap Rockshelter 1:40,000 years of Aboriginal occupation in the Napier Ranges, Aust. Archaeol, p.40, 1995.

J. M. Bowler, R. Jones, H. Allen, and A. G. Thorne, Pleistocene human remains from Australia: A living site and human cremation from Lake Mungo, western New South Wales, World Archaeology, vol.27, issue.10, pp.39-60, 1970.
DOI : 10.1086/626878

C. S. Turney, Redating the onset of burning at Lynch's Crater (North Queensland): implications for human settlement in Australia, Journal of Quaternary Science, vol.40, issue.8, pp.767-771, 2001.
DOI : 10.1017/S0033822200018397

C. Clarkson, The archaeology, chronology and stratigraphy of Madjedbebe (Malakunanja II): A site in northern Australia with early occupation, Journal of Human Evolution, vol.83, pp.46-64, 2015.
DOI : 10.1016/j.jhevol.2015.03.014

S. M. Van-holst-pellekaan, M. Ingman, J. Roberts-thomson, and R. M. Harding, Mitochondrial genomics identifies major haplogroups in Aboriginal Australians, American Journal of Physical Anthropology, vol.70, issue.2, pp.282-294, 2006.
DOI : 10.1086/321197

G. Hudjashov, Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis, Proc. Natl. Acad. Sci. USA, pp.8726-8730, 2007.
DOI : 10.1086/303038

D. Reich, Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania, The American Journal of Human Genetics, vol.89, issue.4, pp.516-528, 2011.
DOI : 10.1016/j.ajhg.2011.09.005

M. Rasmussen, An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia, Science, vol.19, issue.9, pp.94-98, 2011.
DOI : 10.1101/gr.094052.109
URL : https://hal.archives-ouvertes.fr/hal-00967672

M. Kayser, Independent Histories of Human Y Chromosomes from Melanesia and Australia, The American Journal of Human Genetics, vol.68, issue.1, pp.173-190, 2001.
DOI : 10.1086/316949

B. P. Mcevoy, Whole-Genome Genetic Diversity in a Sample of Australians with Deep Aboriginal Ancestry, The American Journal of Human Genetics, vol.87, issue.2, pp.297-305, 2010.
DOI : 10.1016/j.ajhg.2010.07.008

N. Nagle, Antiquity and diversity of aboriginal Australian Y-chromosomes, American Journal of Physical Anthropology, vol.55, issue.7, pp.367-381, 2016.
DOI : 10.1038/jhg.2010.40

A. Bergstrom, Deep Roots for Aboriginal Australian Y Chromosomes, Current Biology, vol.26, issue.6, pp.809-813, 2016.
DOI : 10.1016/j.cub.2016.01.028

T. H. Heupink, Ancient mtDNA sequences from the First Australians revisited, Proc. Natl. Acad. Sci. USA, pp.6892-6897, 2016.
DOI : 10.1101/pdb.prot5448

N. Nagle, Mitochondrial DNA diversity of present-day Aboriginal Australians and implications for human evolution in Oceania, Journal of Human Genetics, vol.77, issue.3, 2016.
DOI : 10.2752/175303709X434149

A. S. Malaspinas, A genomic history of Aboriginal Australia, Nature, vol.89, issue.7624, 2016.
DOI : 10.1016/j.ajhg.2011.09.005

J. Birdsell, In Sunda and Sahul: Prehistoric Studies in Southeast Asia, pp.113-167, 1977.

O. Connell, J. F. Allen, and J. , Forum The Restaurant At The End Of The Universe: Modelling the colonisation of Sahui, Australian Archaeology, vol.74, issue.1, pp.5-17, 2012.
DOI : 10.1016/i.auaint.2011.04.014.

J. Friedlaender, Expanding Southwest Pacific Mitochondrial Haplogroups P and Q, Molecular Biology and Evolution, vol.22, issue.6, pp.1506-1517, 2005.
DOI : 10.1093/molbev/msi142

A. J. Redd, Gene Flow from the Indian Subcontinent to Australia, Current Biology, vol.12, issue.8, pp.673-677, 2002.
DOI : 10.1016/S0960-9822(02)00789-3

A. J. Redd and M. Stoneking, Peopling of Sahul: mtDNA Variation in Aboriginal Australian and Papua New Guinean Populations, The American Journal of Human Genetics, vol.65, issue.3, pp.808-828, 1999.
DOI : 10.1086/302533

I. Pugach, F. Delfin, E. Gunnarsdottir, M. Kayser, and M. Stoneking, Genome-wide data substantiate Holocene gene flow from India to Australia, Proc. Natl. Acad. Sci. USA, pp.1803-1808, 2013.
DOI : 10.1086/519795

T. H. Huxley, On the Geographical Distribution of the Chief Modifications of Mankind, The Journal of the Ethnological Society of London (1869-1870), vol.2, issue.4, pp.404-412, 1870.
DOI : 10.2307/3014371

R. M. Dixon, 43041 | DOI: 10.1038/srep43041 28 The Languages of Australia Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation, Hum. Mutat, vol.7, issue.30, pp.386-394, 1980.

S. Van-holst-pellekaan, Genetic evidence for the colonization of Australia, Quaternary International, vol.285, pp.44-56, 2013.
DOI : 10.1016/j.quaint.2011.04.014

K. A. Tabbada, Philippine Mitochondrial DNA Diversity: A Populated Viaduct between Taiwan and Indonesia?, Molecular Biology and Evolution, vol.27, issue.1, pp.21-31, 2010.
DOI : 10.1093/molbev/msp215

F. Delfin, Complete mtDNA genomes of Filipino ethnolinguistic groups: a melting pot of recent and ancient lineages in the Asia-Pacific region, European Journal of Human Genetics, vol.41, issue.2, pp.228-237, 2014.
DOI : 10.1111/j.1365-294X.2011.05406.x

E. Heyer, M. Georges, M. Pachner, and P. Endicott, Genetic Diversity of Four Filipino Negrito Populations from Luzon: Comparison of Male and Female Effective Population Sizes and Differential Integration of Immigrants into Aeta and Agta Communities, Human Biology, vol.85, issue.1-3, pp.189-208, 2013.
DOI : 10.3378/027.085.0310

S. M. Gomes, Human settlement history between Sunda and Sahul: a focus on East Timor (Timor-Leste) and the Pleistocenic mtDNA diversity, BMC Genomics, vol.16, issue.1, p.70, 2015.
DOI : 10.3378/027.085.0310

K. N. Ballantyne, MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania, Forensic Science International: Genetics, vol.6, issue.4, pp.425-436, 2012.
DOI : 10.1016/j.fsigen.2011.08.010

K. Huoponen, T. G. Schurr, Y. Chen, and D. C. Wallace, Mitochondrial DNA variation in an Aboriginal Australian population: evidence for genetic isolation and regional differentiation, Human Immunology, vol.62, issue.9, pp.954-969, 2001.
DOI : 10.1016/S0198-8859(01)00294-4

M. Ingman and U. Gyllensten, Mitochondrial Genome Variation and Evolutionary History of Australian and New Guinean Aborigines, Genome Research, vol.13, issue.7
DOI : 10.1101/gr.686603

M. Ingman, H. Kaessmann, S. Paabo, and U. Gyllensten, Mitochondrial genome variation and the origin of modern humans, Nature, vol.408, pp.708-713, 2000.

S. Van-holst-pellekaan, M. Frommer, J. Sved, and B. Boettcher, Mitochondrial Control-Region Sequence Variation in Aboriginal Australians, The American Journal of Human Genetics, vol.62, issue.2, pp.435-449, 1998.
DOI : 10.1086/301710

R. L. Cann, M. Stoneking, and A. C. Wilson, Mitochondrial DNA and human evolution, Nature, vol.325, issue.6099, pp.31-36, 1987.
DOI : 10.1038/325031a0

S. Kumar, Reconstructing Indian-Australian phylogenetic link, BMC Evolutionary Biology, vol.9, issue.1, p.173, 2009.
DOI : 10.1186/1471-2148-9-173

A. Chandrasekar, Updating Phylogeny of Mitochondrial DNA Macrohaplogroup M in India: Dispersal of Modern Human in South Asian Corridor, PLoS ONE, vol.2009, issue.2, p.7447, 2009.
DOI : 10.1371/journal.pone.0007447.s008

T. Kivisild, The Role of Selection in the Evolution of Human Mitochondrial Genomes, Genetics, vol.172, issue.1, pp.373-387, 2006.
DOI : 10.1534/genetics.105.043901

M. Derenko, Complete Mitochondrial DNA Diversity in Iranians, PLoS ONE, vol.124, issue.11, p.80673, 2013.
DOI : 10.1371/journal.pone.0080673.s008

R. Fregel, Multiple Ethnic Origins of Mitochondrial DNA Lineages for the Population of Mauritius, PLoS ONE, vol.9, issue.3, p.93294, 2014.
DOI : 10.1371/journal.pone.0093294.s009

V. Macaulay, Single, Rapid Coastal Settlement of Asia Revealed by Analysis of Complete Mitochondrial Genomes, Science, vol.308, issue.5724, pp.1034-1036, 2005.
DOI : 10.1126/science.1109792

D. A. Merriwether, Ancient mitochondrial M haplogroups identified in the Southwest Pacific, Proc. Natl. Acad. Sci. USA, pp.13034-13039, 2005.
DOI : 10.1086/318436

H. J. Bandelt, V. Macaulay, and M. B. Richards, Human Mitochondrial DNA and the Evolution of, Homo Sapiens, vol.18, 2006.

D. M. Behar, A ???Copernican??? Reassessment of the Human Mitochondrial DNA Tree from its Root, The American Journal of Human Genetics, vol.90, issue.4, pp.675-684, 2012.
DOI : 10.1016/j.ajhg.2012.03.002

J. S. Friedlaender, Melanesian mtDNA Complexity, PLoS ONE, vol.70, issue.2, p.248, 2007.
DOI : 10.1371/journal.pone.0000248.s004

M. Kayser, The Impact of the Austronesian Expansion: Evidence from mtDNA and Y Chromosome Diversity in the Admiralty Islands of Melanesia, Molecular Biology and Evolution, vol.25, issue.7, pp.1362-1374, 2008.
DOI : 10.1093/molbev/msn078

A. T. Duggan, Maternal History of Oceania from Complete mtDNA Genomes: Contrasting Ancient Diversity with Recent Homogenization Due to the Austronesian Expansion, The American Journal of Human Genetics, vol.94, issue.5, pp.721-733, 2014.
DOI : 10.1016/j.ajhg.2014.03.014

J. Beckett, Torres Strait Islanders: Custom and Colonialism, 1987.

M. J. Pierson, Deciphering Past Human Population Movements in Oceania: Provably Optimal Trees of 127 mtDNA Genomes, Molecular Biology and Evolution, vol.23, issue.10, pp.1966-1975, 2006.
DOI : 10.1093/molbev/msl063

P. Soares, Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock, The American Journal of Human Genetics, vol.84, issue.6, pp.740-759, 2009.
DOI : 10.1016/j.ajhg.2009.05.001

Q. Fu, A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes, Current Biology, vol.23, issue.7, pp.553-559, 2013.
DOI : 10.1016/j.cub.2013.02.044

C. D. Woodroffe, D. M. Kennedy, D. Hopley, C. E. Rasmussen, and S. G. Smithers, Holocene reef growth in Torres Strait, Marine Geology, vol.170, issue.3-4, pp.331-346, 2000.
DOI : 10.1016/S0025-3227(00)00094-3

A. N. Williams, A new population curve for prehistoric Australia, Proceedings of the Royal Society B: Biological Sciences, vol.21, issue.7, p.20130486, 2013.
DOI : 10.1002/jqs.1073

G. Hamm, Cultural innovation and megafauna interaction in the early settlement of arid Australia, Nature, vol.61, issue.7628, 2016.
DOI : 10.1016/j.jas.2015.06.007

A. C. Durband, M. C. Westaway, and D. R. Rayner, Interproximal grooving of lower second molars in WLH 4, Australian Archaeology, vol.75, issue.1, pp.118-120, 2012.
DOI : 10.1080/03122417.2012.11681955

M. Van-oven, Human genetics of the Kula Ring: Y-chromosome and mitochondrial DNA variation in the Massim of Papua New Guinea, European Journal of Human Genetics, vol.11, issue.12, pp.1393-1403, 2014.
DOI : 10.1016/j.cub.2010.10.040

M. Kayser, Reduced Y-Chromosome, but Not Mitochondrial DNA, Diversity in Human Populations from West New Guinea, The American Journal of Human Genetics, vol.72, issue.2, pp.281-302, 2003.
DOI : 10.1086/346065

G. Reesink, R. Singer, and M. Dunn, Explaining the Linguistic Diversity of Sahul Using Population Models, PLoS Biology, vol.4, issue.10, 2009.
DOI : 10.1371/journal.pbio.1000241.s005

P. Brown, Palaeoanthropology: Of humans, dogs and tiny tools, Nature, vol.101, issue.7437, pp.316-317, 2013.
DOI : 10.1073/pnas.0401814101

M. Stoneking, L. B. Jorde, K. Bhatia, and A. C. Wilson, Geographic variation in human mitochondrial DNA from Papua New Guinea, Genetics, vol.124, pp.717-733, 1990.

P. A. Soares, Resolving the ancestry of Austronesian-speaking populations, Human Genetics, vol.74, issue.3, pp.309-326, 2016.
DOI : 10.1086/380911

R. P. Norris and B. Harney, Songlines and Navigation in Wardaman and other Australian Aboriginal Cultures, J. Astron. Hist. Herit, vol.17, pp.1-15, 2014.

R. M. Andrews, Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA, Nat. Genet, vol.23, p.147, 1999.

S. Anderson, Sequence and organization of the human mitochondrial genome, Nature, vol.87, issue.5806, pp.457-465, 1981.
DOI : 10.1038/newbio233035a0

H. J. Bandelt, P. Forster, B. C. Sykes, and M. B. Richards, Mitochondrial portraits of human populations using median networks, Genetics, vol.141, pp.743-753, 1995.

P. Forster, R. Harding, A. Torroni, and H. J. Bandelt, Origin and evolution of Native American mtDNA variation: a reappraisal, American journal of human genetics, vol.59, pp.935-945, 1996.

A. J. Drummond, M. A. Suchard, D. Xie, and A. Rambaut, Bayesian Phylogenetics with BEAUti and the BEAST 1.7, Molecular Biology and Evolution, vol.29, issue.8, pp.1969-1973, 2012.
DOI : 10.1093/molbev/mss075

D. Darriba, G. L. Taboada, R. Doallo, and D. Posada, jModelTest 2: more models, new heuristics and parallel computing, Nature Methods, vol.9, issue.8, p.772, 2012.
DOI : 10.1109/TAC.1974.1100705

K. Tamura, G. Stecher, D. Peterson, A. Filipski, and S. Kumar, MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Molecular Biology and Evolution, vol.30, issue.12, pp.2725-2729, 2013.
DOI : 10.1093/molbev/mst197

R. Centre and . Genetics, 15 Department of Anthropology, University of Pennsylvania, National Health Laboratory Service Institut Pasteur, issue.17 21