M. Barczyk, S. Carracedo, and D. Gullberg, Integrins, Cell and Tissue Research, vol.137, issue.1, pp.269-280, 2010.
DOI : 10.1007/s00441-009-0834-6

J. Behring, R. Junker, X. F. Walboomers, B. Chessnut, and J. A. Jansen, Toward guided tissue and bone regeneration: morphology, attachment, proliferation, and migration of cells cultured on collagen barrier membranes. A systematic review, Odontology, vol.69, issue.Suppl, pp.1-11, 2008.
DOI : 10.1007/s10266-008-0087-y

H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat et al., The Protein Data Bank, Nucleic Acids Research, vol.28, issue.1, pp.235-242, 2000.
DOI : 10.1093/nar/28.1.235

E. Boilard, P. A. Nigrovic, K. Larabee, G. F. Watts, J. S. Coblyn et al., Platelets Amplify Inflammation in Arthritis via Collagen-Dependent Microparticle Production, Science, vol.327, issue.5965, pp.580-583, 2010.
DOI : 10.1126/science.1181928

B. Brooks, R. Bruccoleri, B. Olafson, D. States, S. Swaminathan et al., CHARMM: A program for macromolecular energy, minimization, and dynamics calculations, Journal of Computational Chemistry, vol.I, issue.2, pp.187-217, 1983.
DOI : 10.1002/jcc.540040211

A. T. Brunger, P. D. Adams, G. M. Clore, W. L. Delano, P. Gros et al., Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination, Acta Crystallographica Section D Biological Crystallography, vol.54, issue.5, pp.905-921, 1998.
DOI : 10.1107/S0907444998003254

N. Calimet, M. Schaefer, and T. Simonson, Protein molecular dynamics with the generalized born/ACE solvent model, Proteins: Structure, Function, and Genetics, vol.3, issue.2, pp.144-158, 2001.
DOI : 10.1002/prot.1134

P. Castillo-briceñobrice?briceño, M. Arizcun-arizcun, J. Meseguer, V. Mulero, and A. García-ayala, Correlated expression profile of extracellular matrix-related molecules during the inflammatory response of the teleost fish gilthead seabream, Dev. Comp. Immunol, 2010.

P. Castillo-briceñobrice?briceño, M. P. Sepulcre, E. Chaves-pozo, J. Meseguer, A. García-ayala et al., Collagen regulates the activation of professional phagocytes of the teleost fish gilthead seabream, Molecular Immunology, vol.46, issue.7, pp.1409-1415, 2009.
DOI : 10.1016/j.molimm.2008.12.005

W. P. Daley, S. B. Peters, and M. Larsen, Extracellular matrix dynamics in development and regenerative medicine, Journal of Cell Science, vol.121, issue.3, pp.255-264, 2008.
DOI : 10.1242/jcs.006064

M. Damodarasamy, R. B. Vernon, N. Karres, C. H. Chang, D. Bianchi-frias et al., Collagen extracts derived from young and aged mice demonstrate different structural properties and cellular effects in threedimensional gels, J. Gerontol. A: Biol. Sci. Med. Sci, vol.65, pp.209-218, 2010.

P. Castillo-briceño, A role for specific collagen motifs during wound healing and inflammatory response of fibroblasts in the teleost fish gilthead seabream, Molecular Immunology, vol.48, issue.6-7, pp.826-834, 2011.
DOI : 10.1016/j.molimm.2010.12.004

J. Dhawan, A. C. Lichtler, D. W. Rowe, and S. R. Farmer, Cell adhesion regulates pro-alpha 1(I) collagen mRNA stability and transcription in mouse fibroblasts, J. Biol. Chem, vol.266, pp.8470-8475, 1991.

M. Dobaczewski, C. Gonzalez-quesada, and N. G. Frangogiannis, The extracellular matrix as a modulator of the inflammatory and reparative response following myocardial infarction, Journal of Molecular and Cellular Cardiology, vol.48, issue.3, pp.504-511, 2010.
DOI : 10.1016/j.yjmcc.2009.07.015

D. Dobler, N. Ahmed, L. Song, K. E. Eboigbodin, and P. J. Thornalley, Increased Dicarbonyl Metabolism in Endothelial Cells in Hyperglycemia Induces Anoikis and Impairs Angiogenesis by RGD and GFOGER Motif Modification, Diabetes, vol.55, issue.7, pp.1961-1969, 2006.
DOI : 10.2337/db05-1634

J. Emsley, C. G. Knight, R. W. Farndale, M. J. Barnes, and R. C. Liddington, Structural Basis of Collagen Recognition by Integrin ??2??1, Cell, vol.101, issue.1, pp.47-56, 2000.
DOI : 10.1016/S0092-8674(00)80622-4

N. Eswar, B. Webb, M. A. Marti-renom, M. S. Madhusudhan, D. Eramian et al., Comparative protein structure modeling using Modeller, Curr. Protoc. Bioinformatics, 2006.

R. M. Farahani and L. C. Kloth, The hypothesis of ???biophysical matrix contraction???: wound contraction revisited, International Wound Journal, vol.23, issue.3, pp.477-482, 2008.
DOI : 10.1053/joca.1998.0164

R. W. Farndale, T. Lisman, D. Bihan, S. Hamaia, C. S. Smerling et al., Cell???collagen interactions: the use of peptide Toolkits to investigate collagen???receptor interactions, Biochemical Society Transactions, vol.36, issue.2, pp.241-250, 2008.
DOI : 10.1042/BST0360241

D. A. Fraser and A. J. Tenner, Directing an Appropriate Immune Response: The Role of Defense Collagens and other Soluble Pattern Recognition Molecules, Current Drug Targets, vol.9, issue.2, pp.113-122, 2008.
DOI : 10.2174/138945008783502476

N. Gjorevski and C. M. Nelson, Bidirectional extracellular matrix signaling during tissue morphogenesis, Cytokine & Growth Factor Reviews, vol.20, issue.5-6, pp.459-465, 2009.
DOI : 10.1016/j.cytogfr.2009.10.013

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2787686

R. Grünberg, M. Nilges, and J. Leckner, Biskit A software platform for structural bioinformatics, Bioinformatics, vol.23, issue.6, pp.769-770, 2007.
DOI : 10.1093/bioinformatics/btl655

S. Guo and L. A. Dipietro, Factors Affecting Wound Healing, Journal of Dental Research, vol.89, issue.3, pp.219-229, 2010.
DOI : 10.1177/0022034509359125

J. Heino, M. Huhtala, J. Käpylä, and M. S. Johnson, Evolution of collagen-based adhesion systems, The International Journal of Biochemistry & Cell Biology, vol.41, issue.2, pp.341-348, 2009.
DOI : 10.1016/j.biocel.2008.08.021

A. B. Herr and R. W. Farndale, Structural Insights into the Interactions between Platelet Receptors and Fibrillar Collagen, Journal of Biological Chemistry, vol.284, issue.30, pp.19781-19785, 2009.
DOI : 10.1074/jbc.R109.013219

T. Isaji, Y. Sato, T. Fukuda, and J. Gu, N-Glycosylation of the I-like Domain of ??1 Integrin Is Essential for ??1 Integrin Expression and Biological Function: IDENTIFICATION OF THE MINIMAL N-GLYCOSYLATION REQUIREMENT FOR ??5??1, Journal of Biological Chemistry, vol.284, issue.18, pp.12207-12216, 2009.
DOI : 10.1074/jbc.M807920200

D. Jiang, J. Liang, and P. W. Noble, Hyaluronan in Tissue Injury and Repair, Annual Review of Cell and Developmental Biology, vol.23, issue.1, pp.435-461, 2007.
DOI : 10.1146/annurev.cellbio.23.090506.123337

W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein, Comparison of simple potential functions for simulating liquid water, The Journal of Chemical Physics, vol.79, issue.2, pp.926-935, 1983.
DOI : 10.1063/1.445869

C. G. Knight, L. F. Morton, A. R. Peachey, D. S. Tuckwell, R. W. Farndale et al., The Collagen-binding A-domains of Integrins ??1??1 and ??2??1Recognize the Same Specific Amino Acid Sequence, GFOGER, in Native (Triple-helical) Collagens, Journal of Biological Chemistry, vol.275, issue.1, pp.35-40, 2000.
DOI : 10.1074/jbc.275.1.35

J. M. Kramer, Structures and functions of collagens in Caenorhabditis elegans, FASEB J, vol.8, pp.329-336, 1994.

J. E. Lee, C. S. Kang, X. Y. Guan, B. T. Kim, S. H. Kim et al., Discoidin domain receptor 2 is involved in the activation of bone marrow-derived dendritic cells caused by type I collagen, Biochemical and Biophysical Research Communications, vol.352, issue.1, pp.244-250, 2007.
DOI : 10.1016/j.bbrc.2006.11.010

T. Lisman, N. Raynal, D. Groeneveld, B. Maddox, A. R. Peachey et al., A single high-affinity binding site for von Willebrand factor in collagen III, identified using synthetic triple-helical peptides, Blood, vol.108, issue.12, pp.3753-3756, 2006.
DOI : 10.1182/blood-2006-03-011965

I. C. Munnix, K. Gilio, P. R. Siljander, N. Raynal, M. A. Feijge et al., Collagen-mimetic peptides mediate flow-dependent thrombus formation by high- or low-affinity binding of integrin ??2??1 and glycoprotein VI, Journal of Thrombosis and Haemostasis, vol.273, issue.12, pp.2132-2142, 2008.
DOI : 10.1111/j.1538-7836.2008.03167.x

C. Notredame, D. G. Higgins, and J. Heringa, T-coffee: a novel method for fast and accurate multiple sequence alignment, Journal of Molecular Biology, vol.302, issue.1, pp.205-217, 2000.
DOI : 10.1006/jmbi.2000.4042

R. Pacifici, A. Carano, S. A. Santoro, L. Rifas, J. J. Jeffrey et al., Bone matrix constituents stimulate interleukin-1 release from human blood mononuclear cells., Journal of Clinical Investigation, vol.87, issue.1, pp.221-228, 1991.
DOI : 10.1172/JCI114975

S. Perret, J. A. Eble, P. R. Siljander, C. Merle, R. W. Farndale et al., Prolyl Hydroxylation of Collagen Type I Is Required for Efficient Binding to Integrin ??1??1 and Platelet Glycoprotein VI but Not to ??2??1, Journal of Biological Chemistry, vol.278, issue.32, pp.29873-29879, 2003.
DOI : 10.1074/jbc.M304073200

URL : https://hal.archives-ouvertes.fr/hal-00314149

S. Perumal, O. Antipova, and J. P. Orgel, Collagen fibril architecture, domain organization, and triple-helical conformation govern its proteolysis, Proceedings of the National Academy of Sciences, vol.105, issue.8, pp.2824-2829, 2008.
DOI : 10.1073/pnas.0710588105

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2268544

E. Puklin-faucher and M. P. Sheetz, The mechanical integrin cycle, Journal of Cell Science, vol.122, issue.2, pp.179-186, 2009.
DOI : 10.1242/jcs.042127

N. Raynal, S. W. Hamaia, P. R. Siljander, B. Maddox, A. R. Peachey et al., Use of Synthetic Peptides to Locate Novel Integrin ??2beta1-binding Motifs in Human Collagen III, Journal of Biological Chemistry, vol.281, issue.7, pp.3821-3831, 2006.
DOI : 10.1074/jbc.M509818200

D. Rothamel, F. Schwarz, A. Sculean, M. Herten, W. Scherbaum et al., Biocompatibility of various collagen membranes in cultures of human PDL fibroblasts and human osteoblast-like cells, Clinical Oral Implants Research, vol.69, issue.4, pp.443-449, 2004.
DOI : 10.1034/j.1600-0765.2002.01625.x

S. A. Santoro and L. W. Cunningham, Collagen-mediated platelet aggregation: the role of multiple interactions between the platelet surface and collagen, Thromb. Haemost, vol.43, pp.158-162, 1980.

G. S. Schultz and A. Wysocki, Interactions between extracellular matrix and growth factors in wound healing, Wound Repair and Regeneration, vol.17, issue.2, pp.153-162, 2009.
DOI : 10.1111/j.1524-475X.2009.00466.x

P. R. Siljander, S. Hamaia, A. R. Peachey, D. A. Slatter, P. A. Smethurst et al., Integrin Activation State Determines Selectivity for Novel Recognition Sites in Fibrillar Collagens, Journal of Biological Chemistry, vol.279, issue.46, pp.47763-47772, 2004.
DOI : 10.1074/jbc.M404685200

P. A. Smethurst, D. J. Onley, G. E. Jarvis, M. N. O-'connor, C. G. Knight et al., Structural Basis for the Platelet-Collagen Interaction: THE SMALLEST MOTIF WITHIN COLLAGEN THAT RECOGNIZES AND ACTIVATES PLATELET GLYCOPROTEIN VI CONTAINS TWO GLYCINE-PROLINE-HYDROXYPROLINE TRIPLETS, Journal of Biological Chemistry, vol.282, issue.2, 2007.
DOI : 10.1074/jbc.M606479200

B. Steffensen, L. Häkkinen, and H. Larjava, Proteolytic Events of Wound-Healing ??? Coordinated Interactions Among Matrix Metalloproteinases (MMPs), Integrins, and Extracellular Matrix Molecules, Critical Reviews in Oral Biology & Medicine, vol.12, issue.5, pp.373-398, 2001.
DOI : 10.1177/10454411010120050201

Y. Takada, X. Ye, and S. Simon, The integrins, Genome Biology, vol.8, issue.5, p.215, 2007.
DOI : 10.1186/gb-2007-8-5-215

J. Takagi, Structural basis for ligand recognition by RGD (Arg-Gly-Asp)-dependent integrins, Biochemical Society Transactions, vol.32, issue.3, pp.403-406, 2004.
DOI : 10.1042/bst0320403

J. Takagi and T. A. Springer, Integrin activation and structural rearrangement, Immunological Reviews, vol.93, issue.1, pp.141-163, 2002.
DOI : 10.1074/jbc.273.44.28937

K. T. Tran, L. Griffith, and A. Wells, Extracellular matrix signaling through growth factor receptors during wound healing, Wound Repair and Regeneration, vol.14, issue.3, pp.262-268, 2004.
DOI : 10.1016/S1357-2725(99)00015-1

M. Tulla, M. Huhtala, J. Jäälinoja, J. Käpylä, R. W. Farndale et al., Analysis of an ascidian integrin provides new insight into early evolution of collagen recognition, FEBS Letters, vol.273, issue.13, pp.2434-2440, 2007.
DOI : 10.1016/j.febslet.2007.04.054

W. F. Vogel, Collagen-receptor signaling in health and disease, Eur. J. Dermatol, vol.11, pp.506-514, 2001.

T. J. Wess, Collagen Fibril Form and Function, Adv. Protein Chem, vol.70, pp.341-374, 2005.
DOI : 10.1016/S0065-3233(05)70010-3

K. Wolf, S. Alexander, V. Schacht, L. M. Coussens, U. H. Von-andrian et al., Collagen-based cell migration models in vitro and in vivo, Seminars in Cell & Developmental Biology, vol.20, issue.8, pp.931-941, 2009.
DOI : 10.1016/j.semcdb.2009.08.005

T. Xiao, J. Takagi, B. S. Coller, J. H. Wang, and T. A. Springer, Structural basis for allostery in integrins and binding to fibrinogen-mimetic therapeutics, Nature, vol.83, issue.7013, pp.59-67, 2004.
DOI : 10.1074/jbc.271.36.21978

J. P. Xiong, T. Stehle, S. L. Goodman, and M. A. Arnaout, A Novel Adaptation of the Integrin PSI Domain Revealed from Its Crystal Structure, Journal of Biological Chemistry, vol.279, issue.39, pp.40252-40254, 2004.
DOI : 10.1074/jbc.C400362200

Y. M. Xiong and L. Zhang, Structure-Function of the Putative I-domain within the Integrin beta 2 Subunit, Journal of Biological Chemistry, vol.276, issue.22, pp.19340-19349, 2001.
DOI : 10.1074/jbc.M008903200