RNA-binding proteins: modular design for efficient function, Nature Reviews Molecular Cell Biology, vol.13, issue.6, pp.479-490, 2007. ,
DOI : 10.1038/nrm2178
Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites, Wiley Interdisciplinary Reviews - RNA, vol.105, pp.34-46, 2010. ,
DOI : 10.1002/wrna.6
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias, Molecular and Biochemical Parasitology, vol.156, issue.2, pp.93-101, 2007. ,
DOI : 10.1016/j.molbiopara.2007.07.007
Accurate polyadenylation of procyclin mRNAs in Trypanosoma brucei is determined by pyrimidine-rich elements in the intergenic regions., Molecular and Cellular Biology, vol.14, issue.6, pp.3668-3675, 1994. ,
DOI : 10.1128/MCB.14.6.3668
Control of polyadenylation and alternative splicing of transcripts from adjacent genes in a procyclin expression site: a dual role for polypyrimidine tracts in trypanosomes?, Nucleic Acids Research, vol.22, issue.8, pp.1359-1364, 1994. ,
DOI : 10.1093/nar/22.8.1359
A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes., Genes & Development, vol.8, issue.4, pp.491-501, 1994. ,
DOI : 10.1101/gad.8.4.491
The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution, PLoS Pathogens, vol.340, issue.9, 2010. ,
DOI : 10.1371/journal.ppat.1001090.s030
Spliced Leader Trapping Reveals Widespread Alternative Splicing Patterns in the Highly Dynamic Transcriptome of Trypanosoma brucei, PLoS Pathogens, vol.28, issue.8, 2010. ,
DOI : 10.1371/journal.ppat.1001037.s021
Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites, Nucleic Acids Research, vol.38, issue.15, pp.4946-4957, 2010. ,
DOI : 10.1093/nar/gkq237
Developmental regulation of gene expression in trypanosomatid parasitic protozoa, Current Opinion in Microbiology, vol.10, issue.6, pp.569-577, 2007. ,
DOI : 10.1016/j.mib.2007.10.001
Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids, Trends in Parasitology, vol.27, issue.1, 2010. ,
DOI : 10.1016/j.pt.2010.06.011
Selective inactivation of SIDER2 retroposon-mediated mRNA decay contributes to stage- and species-specific gene expression in Leishmania, Molecular Microbiology, vol.2, issue.2, pp.471-491, 2010. ,
DOI : 10.1111/j.1365-2958.2010.07226.x
Trypanosoma brucei PUF9 Regulates mRNAs for Proteins Involved in Replicative Processes over the Cell Cycle, PLoS Pathogens, vol.125, issue.7, p.1000565, 2009. ,
DOI : 10.1371/journal.ppat.1000565.s003
Unravelling the procyclin coat of Trypanosoma brucei, Molecular and Biochemical Parasitology, vol.91, issue.1, pp.117-130, 1998. ,
DOI : 10.1016/S0166-6851(97)00195-3
The surface coat of procyclic Trypanosoma brucei: Programmed expression and proteolytic cleavage of procyclin in the tsetse fly, Proceedings of the National Academy of Sciences, vol.98, issue.4, pp.1513-1518, 2001. ,
DOI : 10.1073/pnas.98.4.1513
Multiple procyclin isoforms are expressed differentially during the development of insect forms of Trypanosoma brucei, Journal of Molecular Biology, vol.312, issue.4, pp.597-607, 2001. ,
DOI : 10.1006/jmbi.2001.5004
Trypanosoma brucei: constitutive activity of the VSG and procyclin gene promoters, EMBO J, vol.9, pp.3145-3151, 1990. ,
A conserved stem-loop structure in the 3' untranslated region of procyclin mRNAs regulates expression in Trypanosoma brucei., Proceedings of the National Academy of Sciences, vol.91, issue.1, pp.370-374, 1994. ,
DOI : 10.1073/pnas.91.1.370
Elements in the 3' untranslated region of procyclin mRNA regulate expression in insect forms of Trypanosoma brucei by modulating RNA stability and translation., Molecular and Cellular Biology, vol.17, issue.8, pp.4372-4380, 1997. ,
DOI : 10.1128/MCB.17.8.4372
Contributions of the procyclin 3??? untranslated region and coding region to the regulation of expression in bloodstream forms of Trypanosoma brucei, Molecular and Biochemical Parasitology, vol.89, issue.1, pp.109-121, 1997. ,
DOI : 10.1016/S0166-6851(97)00107-2
Mechanisms of developmental regulation in Trypanosoma brucei: a polypyrimidine tract in the 3'-untranslated region of a surface protein mRNA affects RNA abundance and translation, Nucleic Acids Research, vol.25, issue.15, pp.3017-3026, 1997. ,
DOI : 10.1093/nar/25.15.3017
A major surface glycoprotein of Trypanosoma brucei is expressed transiently during development and can be regulated post-transcriptionally by glycerol or hypoxia, Genes Dev, vol.14, pp.615-626, 2000. ,
Expression of a Major Surface Protein of Trypanosoma brucei Insect Forms Is Controlled by the Activity of Mitochondrial Enzymes, Molecular Biology of the Cell, vol.15, issue.9, pp.3986-3993, 2004. ,
DOI : 10.1091/mbc.E04-04-0341
Expression of Procyclin mRNAs during Cyclical Transmission of Trypanosoma brucei, PLoS Pathogens, vol.31, issue.3, p.22, 2005. ,
DOI : 0166-6851(1988)031[0203:PAUIGS]2.0.CO;2
Differential Trypanosome Surface Coat Regulation by a CCCH Protein That Co-Associates with procyclin mRNA cis-Elements, PLoS Pathogens, vol.111, issue.2, p.1000317, 2009. ,
DOI : 10.1371/journal.ppat.1000317.s003
The Genome of the African Trypanosome Trypanosoma brucei, Science, vol.309, issue.5733, pp.416-422, 2005. ,
DOI : 10.1126/science.1112642
The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease, Science, vol.309, issue.5733, pp.409-415, 2005. ,
DOI : 10.1126/science.1112631
The Genome of the Kinetoplastid Parasite, Leishmania major, Science, vol.309, issue.5733, pp.436-442, 2005. ,
DOI : 10.1126/science.1112680
RNA-Binding Domain Proteins in Kinetoplastids: a Comparative Analysis, Eukaryotic Cell, vol.4, issue.12, pp.2106-2114, 2005. ,
DOI : 10.1128/EC.4.12.2106-2114.2005
Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major, BMC Genomics, vol.11, issue.1, p.283, 2010. ,
DOI : 10.1186/1471-2164-11-283
The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism, Genome Biology, vol.4, issue.10, p.64, 2003. ,
DOI : 10.1186/gb-2003-4-10-r64
A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components, RNA, vol.9, issue.1, pp.62-76, 2003. ,
DOI : 10.1261/rna.2134303
RNA Interference Analyses Suggest a Transcript-specific Regulatory Role for Mitochondrial RNA-binding Proteins MRP1 and MRP2 in RNA Editing and Other RNA Processing in Trypanosoma brucei, Journal of Biological Chemistry, vol.280, issue.4, pp.2429-2438, 2005. ,
DOI : 10.1074/jbc.M405933200
A PIWI homolog is one of the proteins expressed exclusively during macronuclear development in the ciliate Stylonychia lemnae, Nucleic Acids Research, vol.30, issue.20, pp.4380-4386, 2002. ,
DOI : 10.1093/nar/gkf579
Cold shock and regulation of surface protein trafficking convey sensitization to inducers of stage differentiation in Trypanosoma brucei, Genes & Development, vol.18, issue.22, pp.2798-2811, 2004. ,
DOI : 10.1101/gad.323404
Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism, Cell, vol.126, issue.4, pp.701-711, 2006. ,
DOI : 10.1016/j.cell.2006.06.047
Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA, Nucleic Acids Research, vol.38, issue.12, pp.4052-4066, 2010. ,
DOI : 10.1093/nar/gkq141
Structure of Alba: an archaeal chromatin protein modulated by acetylation, The EMBO Journal, vol.21, issue.17, pp.4654-4662, 2002. ,
DOI : 10.1093/emboj/cdf465
Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs, RNA, vol.13, issue.10, pp.1648-1655, 2007. ,
DOI : 10.1261/rna.654407
Eukaryotic ribonucleases P/MRP: the crystal structure of the P3 domain, The EMBO Journal, vol.268, issue.4, pp.761-769, 2010. ,
DOI : 10.1017/S1355838201001996
Obligate Heterodimerization of the Archaeal Alba2 Protein with Alba1 Provides a Mechanism for Control of DNA Packaging, Structure, vol.13, issue.7, pp.963-971, 2005. ,
DOI : 10.1016/j.str.2005.04.016
Electron microscopic study of DNA complexes with proteins from the Archaebacterium Sulfolobus acidocaldarius, EMBO J, vol.5, pp.3715-3721, 1986. ,
Heterodimerization regulates RNase MRP/RNase P association, localization, and expression of Rpp20 and Rpp25, RNA, vol.13, issue.1, pp.65-75, 2007. ,
DOI : 10.1261/rna.237807
Glycolysis modulates trypanosome glycoprotein expression as revealed by an RNAi library, The EMBO Journal, vol.21, issue.17, pp.4429-4438, 2002. ,
DOI : 10.1093/emboj/cdf474
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC125414
Of proteins and RNA: The RNase P/MRP family, RNA, vol.16, issue.9, pp.1725-1747, 2010. ,
DOI : 10.1261/rna.2214510
Human RNase P: a tRNA-processing enzyme and transcription factor, Nucleic Acids Research, vol.35, issue.11, pp.3519-3524, 2007. ,
DOI : 10.1093/nar/gkm071
URL : http://doi.org/10.1093/nar/gkm071
Ribonuclease P: The Evolution of an Ancient RNA Enzyme, Critical Reviews in Biochemistry and Molecular Biology, vol.37, issue.10, pp.77-102, 2006. ,
DOI : 10.1271/bbb.69.1209
Eukaryotic Ribonuclease P: A Plurality of Ribonucleoprotein Enzymes, Annual Review of Biochemistry, vol.71, issue.1, pp.165-189, 2002. ,
DOI : 10.1146/annurev.biochem.71.110601.135352
Unexpected diversity of RNase P, an ancient tRNA processing enzyme: Challenges and prospects, FEBS Letters, vol.324, issue.2, pp.287-296, 2010. ,
DOI : 10.1016/j.febslet.2009.11.048
Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes, Nucleic Acids Research, vol.34, issue.18, pp.5145-5156, 2006. ,
DOI : 10.1093/nar/gkl626
Mitochondrial ribonuclease P activity of Trypanosoma brucei, Molecular and Biochemical Parasitology, vol.115, issue.1, pp.109-117, 2001. ,
DOI : 10.1016/S0166-6851(01)00273-0
Role of a 300-Kilodalton Nuclear Complex in the Maturation of Trypanosoma brucei Initiator Methionyl-tRNA, Eukaryotic Cell, vol.3, issue.4, pp.893-899, 2004. ,
DOI : 10.1128/EC.3.4.893-899.2004
Downregulation of the essential Trypanosoma brucei La protein affects accumulation of elongator methionyl-tRNA, Molecular and Biochemical Parasitology, vol.144, issue.1, pp.104-108, 2005. ,
DOI : 10.1016/j.molbiopara.2005.06.006
Eukaryotic-type elongator tRNAMet of Trypanosoma brucei becomes formylated after import into mitochondria, Proceedings of the National Academy of Sciences, vol.99, issue.3, pp.1152-1157, 2002. ,
DOI : 10.1073/pnas.022522299
RNA granules: The good, the bad and the ugly, Cellular Signalling, vol.23, issue.2, 2010. ,
DOI : 10.1016/j.cellsig.2010.08.011
Stress granules: the Tao of RNA triage, Trends in Biochemical Sciences, vol.33, issue.3, pp.141-150, 2008. ,
DOI : 10.1016/j.tibs.2007.12.003
P Bodies and the Control of mRNA Translation and Degradation, Molecular Cell, vol.25, issue.5, pp.635-646, 2007. ,
DOI : 10.1016/j.molcel.2007.02.011
Eukaryotic Stress Granules: The Ins and Outs of Translation, Molecular Cell, vol.36, issue.6, pp.932-941, 2009. ,
DOI : 10.1016/j.molcel.2009.11.020
P bodies: at the crossroads of post-transcriptional pathways, Nature Reviews Molecular Cell Biology, vol.89, issue.1, pp.9-22, 2007. ,
DOI : 10.1038/nrm2080
Universal Features of Post-Transcriptional Gene Regulation Are Critical for Plasmodium Zygote Development, PLoS Pathogens, vol.5, issue.1, p.1000767, 2010. ,
DOI : 10.1371/journal.ppat.1000767.s023
Recruitment of mRNAs to cytoplasmic ribonucleoprotein granules in trypanosomes, Molecular Microbiology, vol.5, issue.3, pp.655-670, 2007. ,
DOI : 10.1111/j.1365-2958.2007.05833.x
Highly Efficient Tandem Affinity Purification of Trypanosome Protein Complexes Based on a Novel Epitope Combination, Eukaryotic Cell, vol.4, issue.11, pp.1942-1950, 2005. ,
DOI : 10.1128/EC.4.11.1942-1950.2005
The Molecular Mechanics of Eukaryotic Translation, Annual Review of Biochemistry, vol.73, issue.1, pp.657-704, 2004. ,
DOI : 10.1146/annurev.biochem.73.030403.080419
Ribosomal and DNA binding proteins of the thermoacidophilic archaebacterium Sulfolobus acidocaldarius, Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, vol.873, issue.3, pp.405-413, 1986. ,
DOI : 10.1016/0167-4838(86)90090-7
Identification of the gene encoding archeal-specific DNA-binding proteins of the Sac10b family, Molecular Microbiology, vol.32, issue.3, pp.669-670, 1999. ,
DOI : 10.1046/j.1365-2958.1999.01366.x
Ssh10b, a conserved thermophilic archaeal protein, binds RNA in vivo, Molecular Microbiology, vol.278, issue.5, pp.1605-1615, 2003. ,
DOI : 10.1046/j.1365-2958.2003.03793.x
Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution, Bioinformatics, vol.24, issue.16, pp.1793-1797, 2008. ,
DOI : 10.1093/bioinformatics/btn314
Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs, RNA, vol.13, issue.10, pp.1648-1655, 2007. ,
DOI : 10.1261/rna.654407
Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA, Nucleic Acids Research, vol.38, issue.12, pp.4052-4066, 2010. ,
DOI : 10.1093/nar/gkq141
Differential association of protein subunits with the human RNase MRP and RNase P complexes, RNA, vol.12, issue.7, pp.1373-1382, 2006. ,
DOI : 10.1261/rna.2293906
The four trypanosomatid eIF4E homologues fall into two separate groups, with distinct features in primary sequence and biological properties, Molecular and Biochemical Parasitology, vol.176, issue.1, 2010. ,
DOI : 10.1016/j.molbiopara.2010.11.011
The RNA helicase DHH1 is central to the correct expression of many developmentally regulated mRNAs in trypanosomes, Journal of Cell Science, vol.123, issue.5, pp.699-711, 2010. ,
DOI : 10.1242/jcs.058511
Identification and Specific Localization of Tyrosine-Phosphorylated Proteins in Trypanosoma brucei, Eukaryotic Cell, vol.8, issue.4, pp.617-626, 2009. ,
DOI : 10.1128/EC.00366-08
The Phosphoproteome of Bloodstream Form Trypanosoma brucei, Causative Agent of African Sleeping Sickness, Molecular & Cellular Proteomics, vol.8, issue.7, pp.1527-1538, 2009. ,
DOI : 10.1074/mcp.M800556-MCP200
The Interaction of Alba, a Conserved Archaeal Chromatin Protein, with Sir2 and Its Regulation by Acetylation, Science, vol.296, issue.5565, pp.148-151, 2002. ,
DOI : 10.1126/science.1070506
A sirtuin in the African trypanosome is involved in both DNA repair and telomeric gene silencing but is not required for antigenic variation, Molecular Microbiology, vol.90, issue.3, pp.724-736, 2007. ,
DOI : 10.1111/j.1365-2958.2006.05553.x
First tsetse fly transmission of the ''AnTat'' serodeme of Trypanosoma brucei, Ann Soc Belg Med Trop, vol.57, pp.369-381, 1977. ,
High molecular mass agarose matrix supports growth of bloodstream forms of pleomorphic Trypanosoma brucei strains in axenic culture, Molecular and Biochemical Parasitology, vol.82, issue.1, pp.91-105, 1996. ,
DOI : 10.1016/0166-6851(96)02727-2
Cultivation and in vitro cloning of procyclic culture forms of Trypanosoma brucei in a semi-defined medium, Acta Tropica, vol.36, pp.289-292, 1979. ,
PSSA-2, a Membrane-Spanning Phosphoprotein of Trypanosoma brucei, Is Required for Efficient Maturation of Infection, PLoS ONE, vol.227, issue.95, p.7074, 2009. ,
DOI : 10.1371/journal.pone.0007074.s002
Overcoming Expression and Purification Problems of RhoGDI Using a Family of ???Parallel??? Expression Vectors, Protein Expression and Purification, vol.15, issue.1, pp.34-39, 1999. ,
DOI : 10.1006/prep.1998.1003
Mitochondrial Substrate Level Phosphorylation Is Essential for Growth of Procyclic Trypanosoma brucei, Journal of Biological Chemistry, vol.277, issue.36, pp.32849-32854, 2002. ,
DOI : 10.1074/jbc.M205776200
Highly efficient stable transformation of bloodstream forms of Trypanosoma brucei, Molecular and Biochemical Parasitology, vol.153, issue.2, pp.220-223, 2007. ,
DOI : 10.1016/j.molbiopara.2007.02.008
A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei, Molecular and Biochemical Parasitology, vol.99, issue.1, pp.89-101, 1999. ,
DOI : 10.1016/S0166-6851(99)00002-X
in the Tsetse Fly Is Enhanced by the Expression of Specific Forms of Procyclin, The Journal of Cell Biology, vol.192, issue.6, pp.1369-1379, 1997. ,
DOI : 10.1093/nar/10.3.803
Ablation of the single dynamin of T. brucei blocks mitochondrial fission and endocytosis and leads to a precise cytokinesis arrest, Journal of Cell Science, vol.119, issue.14, pp.2968-2974, 2006. ,
DOI : 10.1242/jcs.03023
Identification and Stage-specific Association with the Translational Apparatus of TbZFP3, a CCCH Protein That Promotes Trypanosome Life-cycle Development, Journal of Biological Chemistry, vol.281, issue.51, pp.39002-39013, 2006. ,
DOI : 10.1074/jbc.M604280200
Blue silver: A very sensitive colloidal Coomassie G-250 staining for proteome analysis, ELECTROPHORESIS, vol.25, issue.9, pp.1327-1333, 2004. ,
DOI : 10.1002/elps.200305844
Procyclin gene expression and loss of the variant surface glycoprotein during differentiation of Trypanosoma brucei, The Journal of Cell Biology, vol.108, issue.2, pp.737-746, 1989. ,
DOI : 10.1083/jcb.108.2.737
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction, Analytical Biochemistry, vol.162, issue.1, pp.156-159, 1987. ,
DOI : 10.1016/0003-2697(87)90021-2
Cycloheximide-mediated accumulation of transcripts from a procyclin expression site depends on the intergenic region, Molecular and Biochemical Parasitology, vol.127, issue.1, pp.93-97, 2003. ,
DOI : 10.1016/S0166-6851(02)00310-9
Northern blot normalization with a 28S rRNA olinucleotide probe, Nucleic Acids Research, vol.17, issue.17, p.7115, 1989. ,
DOI : 10.1093/nar/17.17.7115
The Pfam protein families database, Nucleic Acids Research, vol.38, issue.Database, pp.211-222, 2010. ,
DOI : 10.1093/nar/gkp985
URL : https://hal.archives-ouvertes.fr/hal-01294685
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.27, issue.2, pp.221-224, 2010. ,
DOI : 10.1093/molbev/msp259
URL : https://hal.archives-ouvertes.fr/lirmm-00705187
Phosphoproteome dynamics reveal heat-shock protein complexes specific to the Leishmania donovani infectious stage, Proceedings of the National Academy of Sciences, vol.107, issue.18, pp.8381-8386, 2010. ,
DOI : 10.1073/pnas.0914768107
URL : https://hal.archives-ouvertes.fr/pasteur-00476914