M. Andrew, E. King, M. J. Adams, and E. B. Carstens, Virus Taxonomy, 2011.

L. Nel and W. Markotter, Lyssaviruses, Critical Reviews in Microbiology, vol.14, issue.4, pp.301-324, 2007.
DOI : 10.1080/13550280590900436

L. Dacheux, O. Delmas, and H. Bourhy, Human Rabies Encephalitis Prevention and Treatment: Progress Since Pasteurs Discovery, Infectious Disorders - Drug Targets, vol.11, issue.3, pp.251-299, 2011.
DOI : 10.2174/187152611795768079

D. Knobel, S. Cleaveland, P. Coleman, E. Fevre, and M. Meltzer, Re-evaluating the burden of rabies in Africa and Asia, Bull World Health Organ, vol.83, pp.360-368, 2005.

H. Bourhy, J. Reynes, E. Dunham, L. Dacheux, and F. Larrous, The origin and phylogeography of dog rabies virus, Journal of General Virology, vol.89, issue.11, pp.2673-2681, 2008.
DOI : 10.1099/vir.0.2008/003913-0

H. Bourhy, B. Kissi, L. Audry, M. Smreczak, and M. Sadkowska-todys, Ecology and evolution of rabies virus in Europe, Journal of General Virology, vol.80, issue.10, pp.2545-2557, 1999.
DOI : 10.1099/0022-1317-80-10-2545

C. Talbi, P. Lemey, M. Suchard, E. Abdelatif, and M. Elharrak, Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus, PLoS Pathogens, vol.56, issue.10, p.1001166, 2010.
DOI : 10.1371/journal.ppat.1001166.s001

URL : https://hal.archives-ouvertes.fr/pasteur-01491944

S. Ly, P. Buchy, N. Heng, S. Ong, and N. Chhor, Rabies Situation in Cambodia, PLoS Neglected Tropical Diseases, vol.81, issue.9, p.511, 2009.
DOI : 10.1371/journal.pntd.0000511.t002

W. Suraweera, S. Morris, R. Kumar, D. Warrell, and M. Warrell, Deaths from Symptomatically Identifiable Furious Rabies in India: A Nationally Representative Mortality Survey, PLoS Neglected Tropical Diseases, vol.6, issue.10, p.1847, 2012.
DOI : 10.1371/journal.pntd.0001847.s002

G. Pant and B. Acharya, Rabies: Dangerous Fatal Disease, Veterinary Quarterly Bulletin Nepal Veterinary Association, vol.9, p.39, 2010.

D. Dean and M. Abelseth, Laboratory techniques in rabies: the fluorescent antibody test. Monogr Ser World Health Organ, pp.73-84, 1973.

G. Pant, D. Horton, M. Dahal, J. Rai, and S. Ide, Characterization of rabies virus from a human case in Nepal, Archives of Virology, vol.80, issue.4, pp.681-684, 2011.
DOI : 10.1007/s00705-010-0868-9

O. Delmas, E. Holmes, C. Talbi, F. Larrous, and L. Dacheux, Genomic Diversity and Evolution of the Lyssaviruses, PLoS ONE, vol.20, issue.10, p.2057, 2008.
DOI : 10.1371/journal.pone.0002057.s003

C. Talbi, E. Holmes, P. De-benedictis, O. Faye, and E. Nakoune, Evolutionary history and dynamics of dog rabies virus in western and central Africa, Journal of General Virology, vol.90, issue.4, pp.783-791, 2009.
DOI : 10.1099/vir.0.007765-0

H. Bourhy, B. Kissi, and N. Tordo, Molecular Diversity of the Lyssavirus Genus, Virology, vol.194, issue.1, pp.70-81, 1993.
DOI : 10.1006/viro.1993.1236

S. Meng, J. Yan, G. Xu, S. Nadin-davis, and P. Ming, A molecular epidemiological study targeting the glycoprotein gene of rabies virus isolates from China, Virus Research, vol.124, issue.1-2, pp.125-138, 2007.
DOI : 10.1016/j.virusres.2006.10.011

Y. Zhang, C. Xiong, Y. Zou, D. Wang, and R. Jiang, Molecular characterization of rabies virus isolates in China during 2004, Virus Research, vol.121, issue.2, pp.179-188, 2004.
DOI : 10.1016/j.virusres.2006.05.010

M. Larkin, G. Blackshields, N. Brown, R. Chenna, and P. Mcgettigan, Clustal W and Clustal X version 2.0, Bioinformatics, vol.23, issue.21, pp.2947-2948, 2007.
DOI : 10.1093/bioinformatics/btm404

URL : https://hal.archives-ouvertes.fr/hal-00206210

D. Zwickl, Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion, 2006.

D. Swofford, PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods) Version 4. Sinauer Associates, 2003.

D. Posada, MODELTEST: testing the model of DNA substitution, Bioinformatics, vol.14, issue.9, pp.817-818, 1998.
DOI : 10.1093/bioinformatics/14.9.817

A. Drummond and A. Rambaut, BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evolutionary Biology, vol.7, issue.1, p.214, 2007.
DOI : 10.1186/1471-2148-7-214

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2247476

I. Kuzmin, G. Hughes, A. Botvinkin, S. Gribencha, and C. Rupprecht, Arctic and Arctic-like rabies viruses: distribution, phylogeny and evolutionary history, Epidemiology and Infection, vol.2, issue.10, pp.509-519, 2008.
DOI : 10.1016/j.virusres.2005.08.007

S. Nadin-davis, M. Sheen, and A. Wandeler, Recent emergence of the Arctic rabies virus lineage, Virus Research, vol.163, issue.1, pp.352-362, 2012.
DOI : 10.1016/j.virusres.2011.10.026

K. Mansfield, V. Racloz, L. Mcelhinney, D. Marston, and N. Johnson, Molecular epidemiological study of Arctic rabies virus isolates from Greenland and comparison with isolates from throughout the Arctic and Baltic regions, Virus Research, vol.116, issue.1-2, pp.1-10, 2006.
DOI : 10.1016/j.virusres.2005.08.007

S. Nadin-davis, S. Simani, J. Armstrong, A. Fayaz, and A. Wandeler, Molecular and antigenic characterization of rabies viruses from Iran identifies variants with distinct epidemiological origins, Epidemiology and Infection, vol.131, issue.1, pp.777-790, 2003.
DOI : 10.1017/S095026880300863X

Y. Arai, H. Takahashi, Y. Kameoka, T. Shiino, and O. Wimalaratne, Characterization of Sri Lanka rabies virus isolates using nucleotide sequence analysis of nucleoprotein gene, Acta Virol, vol.45, pp.327-333, 2001.

R. Jayakumar, K. Tirumurugaan, G. Ganga, K. Kumanan, M. Nainar et al., Characterization of nucleoprotein gene sequence of an Indian isolate of rabies virus, Acta Virol, vol.48, pp.47-50, 2004.

T. Matsumoto, K. Ahmed, O. Wimalaratne, K. Yamada, and S. Nanayakkara, Whole-genome analysis of a human rabies virus from Sri Lanka, Archives of Virology, vol.73, issue.Pt 5, pp.659-669, 2011.
DOI : 10.1007/s00705-010-0905-8

T. Nagarajan, S. Nagendrakumar, B. Mohanasubramanian, S. Rajalakshmi, and N. Hanumantha, Phylogenetic analysis of nucleoprotein gene of dog rabies virus isolates from Southern India, Infection, Genetics and Evolution, vol.9, issue.5, pp.976-982, 2009.
DOI : 10.1016/j.meegid.2009.04.004

S. Nanayakkara, J. Smith, and C. Rupprecht, Rabies in Sri Lanka: Splendid Isolation, Emerging Infectious Diseases, vol.9, issue.3, pp.368-371, 2003.
DOI : 10.3201/eid0903.020545

URL : http://doi.org/10.3201/eid0903.020545

H. Badrane and N. Tordo, Host Switching in Lyssavirus History from the Chiroptera to the Carnivora Orders, Journal of Virology, vol.75, issue.17, pp.8096-8104, 2001.
DOI : 10.1128/JVI.75.17.8096-8104.2001

S. Nadin-davis, G. Turner, J. Paul, S. Madhusudana, and A. Wandeler, Emergence of Arctic-like Rabies Lineage in India, Emerging Infectious Diseases, vol.13, issue.1, pp.111-116, 2007.
DOI : 10.3201/eid1301.060702

K. Jamil, K. Ahmed, M. Hossain, T. Matsumoto, and M. Ali, Arctic-like Rabies Virus, Bangladesh, Emerging Infectious Diseases, vol.18, issue.12, pp.2021-2024, 2012.
DOI : 10.3201/eid1812.120061

URL : http://doi.org/10.3201/eid1812.120061

. Tenzin, S. Wacharapluesadee, J. Denduangboripant, N. Dhand, and R. Dorji, Rabies virus strains circulating in Bhutan: implications for control, Epidemiology and Infection, vol.83, issue.10, pp.1457-1462, 2011.
DOI : 10.1017/S0950268810002682

G. Reddy, R. Singh, R. Singh, K. Singh, and P. Gupta, Molecular characterization of Indian rabies virus isolates by partial sequencing of nucleoprotein (N) and phosphoprotein (P) genes, Virus Genes, vol.13, issue.4, pp.13-17, 2011.
DOI : 10.1007/s11262-011-0601-0

J. Denduangboripant, S. Wacharapluesadee, B. Lumlertdacha, N. Ruankaew, and W. Hoonsuwan, Transmission dynamics of rabies virus in Thailand: Implications for disease control, BMC Infectious Diseases, vol.88, issue.1, p.52, 2005.
DOI : 10.1046/j.1365-294X.2003.02051.x

H. Susetya, M. Sugiyama, A. Inagaki, N. Ito, and G. Mudiarto, Molecular epidemiology of rabies in Indonesia, Virus Research, vol.135, issue.1, pp.144-149, 2008.
DOI : 10.1016/j.virusres.2008.03.001

T. Lembo, The Blueprint for Rabies Prevention and Control: A Novel Operational Toolkit for Rabies Elimination, PLoS Neglected Tropical Diseases, vol.2011, issue.2, p.1388, 2012.
DOI : 10.1371/journal.pntd.0001388.t001

URL : https://hal.archives-ouvertes.fr/pasteur-01481636

T. Lembo, M. Attlan, H. Bourhy, S. Cleaveland, and P. Costa, Renewed Global Partnerships and Redesigned Roadmaps for Rabies Prevention and Control, Veterinary Medicine International, vol.85, issue.6, p.923149, 2011.
DOI : 10.1371/journal.pntd.0000542

URL : https://hal.archives-ouvertes.fr/pasteur-01491355

W. Tenzin and . Mp, Review of Rabies Epidemiology and Control in South, South East and East Asia: Past, Present and Prospects for Elimination, Zoonoses and Public Health, vol.106, issue.5, pp.451-467, 2012.
DOI : 10.1111/j.1863-2378.2012.01489.x

S. Brookes, G. Parsons, N. Johnson, L. Mcelhinney, and A. Fooks, Rabies human diploid cell vaccine elicits cross-neutralising and cross-protecting immune responses against European and Australian bat lyssaviruses, Vaccine, vol.23, issue.32, pp.4101-4109, 2005.
DOI : 10.1016/j.vaccine.2005.03.037

D. Lodmell, J. Smith, J. Esposito, and L. Ewalt, Cross-protection of mice against a global spectrum of rabies virus variants, J Virol, vol.69, pp.4957-4962, 1995.

R. Biek, J. Henderson, L. Waller, C. Rupprecht, and L. Real, A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus, Proceedings of the National Academy of Sciences, vol.104, issue.19, pp.7993-7998, 2007.
DOI : 10.1073/pnas.0700741104

K. Brunker, K. Hampson, D. Horton, and R. Biek, Integrating the landscape epidemiology and genetics of RNA viruses: rabies in domestic dogs as a model, Parasitology, vol.83, issue.14, pp.1-15, 2012.
DOI : 10.1111/j.2041-210X.2010.00048.x

S. Meng, G. Xu, X. Wu, Y. Lei, and J. Yan, Transmission dynamics of rabies in China over the last 40 years, J Clin Virol, vol.49, pp.1969-2009, 2010.

G. Gongal, The epidemiological trend of animal rabies in Nepal and future control strategy, Journal of the Association for Prevention and Control of Rabies in India, vol.8, 2006.

A. Fooks, Rabies remains a 'neglected disease, Euro Surveill, vol.10, pp.1-2, 2005.

L. Dacheux, S. Wacharapluesadee, T. Hemachudha, F. Meslin, and P. Buchy, More Accurate Insight into the Incidence of Human Rabies in Developing Countries through Validated Laboratory Techniques, PLoS Neglected Tropical Diseases, vol.151, issue.11, p.765, 2010.
DOI : 10.1371/journal.pntd.0000765.t003

URL : https://hal.archives-ouvertes.fr/pasteur-00596365

B. Boldbaatar, S. Inoue, N. Tuya, P. Dulam, and D. Batchuluun, Molecular epidemiology of rabies virus in Mongolia, Jpn J Infect Dis, vol.63, pp.358-363, 2005.

B. Hyun, K. Lee, I. Kim, K. Lee, and H. Park, Molecular epidemiology of rabies virus isolates from South Korea, Virus Research, vol.114, issue.1-2, pp.113-125, 2005.
DOI : 10.1016/j.virusres.2005.06.004

I. Kuzmin, A. Botvinkin, L. Mcelhinney, J. Smith, and L. Orciari, MOLECULAR EPIDEMIOLOGY OF TERRESTRIAL RABIES IN THE FORMER SOVIET UNION, Journal of Wildlife Diseases, vol.40, issue.4, pp.617-631, 2004.
DOI : 10.7589/0090-3558-40.4.617

Y. Park, M. Shin, and H. Kwon, Genetic Characterization of Rabies Virus Isolates in Korea, Virus Genes, vol.43, issue.3, pp.341-347, 2005.
DOI : 10.1007/s11262-005-6777-4

X. Shao, X. Yan, G. Luo, H. Zhang, and X. Chai, Genetic evidence for domestic raccoon dog rabies caused by Arctic-like rabies virus in Inner Mongolia, China, Epidemiology and Infection, vol.80, issue.04, pp.629-635, 2011.
DOI : 10.3201/eid1508.081426