Mrr instigates the SOS response after high pressure stress in Escherichia coli, Molecular Microbiology, vol.99, issue.5, pp.1381-1391, 2005. ,
DOI : 10.1073/pnas.092269199
Activation of the Salmonella Typhimurium Mrr protein, Biochemical and Biophysical Research Communications, vol.367, issue.2, pp.435-439, 2008. ,
DOI : 10.1016/j.bbrc.2007.12.151
Hypermutagenesis in mutA cells is mediated by mistranslational corruption of polymerase, and is accompanied by replication fork collapse, Molecular Microbiology, vol.148, issue.6, pp.1752-1763, 2006. ,
DOI : 10.1128/JB.183.5.1796-1800.2001
Impact of hydroxyl- and superoxide anion-based oxidative stress on logarithmic and stationary phase Escherichia coli O157:H7 stress and virulence gene expression, Food Microbiology, vol.29, issue.1, pp.141-147, 2012. ,
DOI : 10.1016/j.fm.2011.09.014
Identification of a DNA-Damage-Inducible Regulon in Acinetobacter baumannii, Journal of Bacteriology, vol.195, issue.24, 2013. ,
DOI : 10.1128/JB.00853-13
Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems, Biology Direct, vol.14, issue.10, p.20, 2013. ,
DOI : 10.1093/bioinformatics/14.10.892
PsiB, an anti-SOS protein, is transiently expressed by the F sex factor during its transmission to an Escherichia coli K-12 recipient, Molecular Microbiology, vol.130, issue.7, pp.885-893, 1992. ,
DOI : 10.1016/0378-1119(84)90012-X
ABSTRACT, Antimicrobial Agents and Chemotherapy, vol.55, issue.5, pp.2438-2441, 2011. ,
DOI : 10.1128/AAC.01549-10
Conjugative DNA Transfer Induces the Bacterial SOS Response and Promotes Antibiotic Resistance Development through Integron Activation, PLoS Genetics, vol.310, issue.Pt 9, p.1001165, 2010. ,
DOI : 10.1371/journal.pgen.1001165.s006
Connecting Environment and Genome Plasticity in the Characterization of Transformation-Induced SOS Regulation and Carbon Catabolite Control of the Vibrio cholerae Integron Integrase, Journal of Bacteriology, vol.194, issue.7, 2012. ,
DOI : 10.1128/JB.05982-11
RpoS Plays a Central Role in the SOS Induction by Sub-Lethal Aminoglycoside Concentrations in Vibrio cholerae, PLoS Genetics, vol.336, issue.4, 2013. ,
DOI : 10.1371/journal.pgen.1003421.t002
URL : https://hal.archives-ouvertes.fr/pasteur-01691109
Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase, Nucleic Acids Research, vol.53, issue.4, 2013. ,
DOI : 10.1111/j.1365-2958.2004.04154.x
URL : https://hal.archives-ouvertes.fr/pasteur-01423602
RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases, Molecular Microbiology, vol.95, issue.2, 2010. ,
DOI : 10.1111/j.1365-2958.2010.07208.x
URL : https://hal.archives-ouvertes.fr/hal-00552639
Mistranslation induced by streptomycin provokes a RecABC/RuvABC-dependent mutator phenotype in Escherichia coli cells 1 1Edited by M. Gottesman, Journal of Molecular Biology, vol.315, issue.4, pp.513-527, 2002. ,
DOI : 10.1006/jmbi.2001.5273
SOS response promotes horizontal dissemination of antibiotic resistance genes, Nature, vol.53, issue.6969, pp.72-74, 2004. ,
DOI : 10.1073/pnas.120163297
The role of the bacterial mismatch repair system in SOS-induced mutagenesis: A theoretical background, Journal of Theoretical Biology, vol.332, pp.30-41, 2013. ,
DOI : 10.1016/j.jtbi.2013.04.026
Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes, Journal of Molecular Biology, vol.226, issue.3, pp.735-745, 1992. ,
DOI : 10.1016/0022-2836(92)90629-X
Endogenous oxidative stress produces diversity and adaptability in biofilm communities, Proceedings of the National Academy of Sciences, vol.100, issue.14, pp.12503-12508, 2008. ,
DOI : 10.1073/pnas.1033133100
URL : http://www.pnas.org/content/105/34/12503.full.pdf
The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo, The EMBO Journal, vol.178, issue.1, pp.145-157, 2010. ,
DOI : 10.1093/nar/20.24.6713
SOS Response Activation and Competence Development Are Antagonistic Mechanisms in Streptococcus thermophilus, Journal of Bacteriology, vol.195, issue.4, pp.696-707, 2013. ,
DOI : 10.1128/JB.01605-12
URL : http://jb.asm.org/content/195/4/696.full.pdf
The bacterial LexA transcriptional repressor, Cellular and Molecular Life Sciences, vol.66, issue.1, pp.82-93, 2009. ,
DOI : 10.1007/s00018-008-8378-6
Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response, Nucleic Acids Research, vol.160, issue.15, pp.6546-6557, 2011. ,
DOI : 10.1016/j.resmic.2009.08.012
Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons, Mob DNA, vol.2, p.6, 2011. ,
URL : https://hal.archives-ouvertes.fr/inserm-00598347
UvrD303, a hyper-helicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C-terminus, 2008. ,
Induction of competence for genetic transformation by antibiotics: convergent evolution of stress responses in distant bacterial species lacking SOS?, Current Opinion in Microbiology, vol.15, issue.5, pp.570-576, 2012. ,
DOI : 10.1016/j.mib.2012.08.001
URL : https://hal.archives-ouvertes.fr/hal-00787606
Induction and Inhibition of Ciprofloxacin Resistance-Conferring Mutations in Hypermutator Bacteria, Antimicrobial Agents and Chemotherapy, vol.50, issue.1, pp.220-225, 2006. ,
DOI : 10.1128/AAC.50.1.220-225.2006
The genetic transformation machinery: composition, localization, and mechanism, FEMS Microbiology Reviews, vol.140, issue.3, pp.643-656, 2009. ,
DOI : 10.1073/pnas.90.9.3875
URL : https://hal.archives-ouvertes.fr/hal-00407190
The Transcription Elongation Factor NusA Is Required for Stress-Induced Mutagenesis in Escherichia coli, Current Biology, vol.20, issue.1, pp.80-85, 2010. ,
DOI : 10.1016/j.cub.2009.11.039
Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli, Genetics, vol.158, pp.41-64, 2001. ,
Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair, Microbiology, vol.146, issue.2, pp.283-288, 2000. ,
DOI : 10.1099/00221287-146-2-283
Stimulation of DNA repair as an evolutionary drive for bacterial luminescence, Luminescence, vol.44, issue.3, pp.140-144, 2003. ,
DOI : 10.1126/science.190.4209.74
The SOS response promotes qnrB quinolone-resistance determinant expression, EMBO reports, vol.112, issue.8, pp.929-933, 2009. ,
DOI : 10.1128/AAC.00339-07
URL : https://hal.archives-ouvertes.fr/inserm-00533078
A new perspective on radiation resistance based on Deinococcus radiodurans, Nature Reviews Microbiology, vol.26, issue.3, pp.237-245, 2009. ,
DOI : 10.1099/00221287-147-7-1709
Definition of the Mycobacterial SOS Box and Use To Identify LexA-Regulated Genes in Mycobacterium tuberculosis, Journal of Bacteriology, vol.184, issue.12, pp.3287-3295, 2002. ,
DOI : 10.1128/JB.184.12.3287-3295.2002
Replication Fork Reversal after Replication???Transcription Collision, PLoS Genetics, vol.97, issue.4, p.1002622, 2012. ,
DOI : 10.1371/journal.pgen.1002622.s005
Structural Basis for Bacterial Transcription-Coupled DNA Repair, Cell, vol.124, issue.3, pp.507-520, 2006. ,
DOI : 10.1016/j.cell.2005.11.045
URL : https://doi.org/10.1016/j.cell.2005.11.045
Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems, DNA Repair, vol.4, issue.2, pp.221-229, 2005. ,
DOI : 10.1016/j.dnarep.2004.09.008
Intermediate Mutation Frequencies Favor Evolution of Multidrug Resistance in Escherichia coli, Genetics, vol.171, issue.2, pp.825-827, 2005. ,
DOI : 10.1534/genetics.105.045526
ABSTRACT, Antimicrobial Agents and Chemotherapy, vol.55, issue.5, pp.1946-1952, 2011. ,
DOI : 10.1128/AAC.01407-10
SOS Response Induces Persistence to Fluoroquinolones in Escherichia coli, PLoS Genetics, vol.178, issue.12, p.1000760, 2009. ,
DOI : 10.1371/journal.pgen.1000760.t001
Ciprofloxacin Causes Persister Formation by Inducing the TisB toxin in Escherichia coli, PLoS Biology, vol.183, issue.2, p.1000317, 2010. ,
DOI : 10.1371/journal.pbio.1000317.s001
DNA Uptake in Bacteria, Annual Review of Microbiology, vol.53, issue.1, pp.217-244, 1999. ,
DOI : 10.1146/annurev.micro.53.1.217
Protein oxidation in response to increased transcriptional or translational errors, Proceedings of the National Academy of Sciences, vol.440, issue.3, pp.5746-5749, 2000. ,
DOI : 10.1016/S0014-5793(98)01495-1
Linking RNA Polymerase Backtracking to Genome Instability in E.??coli, Cell, vol.146, issue.4, pp.533-543, 2011. ,
DOI : 10.1016/j.cell.2011.07.034
Role of reactive oxygen species in antibiotic action and resistance, Current Opinion in Microbiology, vol.12, issue.5, pp.482-489, 2009. ,
DOI : 10.1016/j.mib.2009.06.018
Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli, Molecular Systems Biology, vol.273, issue.1, p.91, 2007. ,
DOI : 10.1016/0968-0004(96)20008-8
URL : http://msb.embopress.org/content/msb/3/1/91.full.pdf
Aeons of distress: an evolutionary perspective on the bacterial SOS response, FEMS Microbiology Reviews, vol.31, issue.6, pp.637-656, 2007. ,
DOI : 10.1016/S0723-2020(99)80063-0
In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon, Bioinformatics, vol.19, issue.17, pp.2225-2236, 2003. ,
DOI : 10.1093/bioinformatics/btg303
Fe-S Cluster Biosynthesis Controls Uptake of Aminoglycosides in a ROS-Less Death Pathway, Science, vol.74, issue.6, pp.1583-1587, 2013. ,
DOI : 10.1111/j.1365-2958.2009.06954.x
Oxidative Stress Responses in Escherichia-Coli and Salmonella- Typhimurium, Microbiological Reviews, vol.55, pp.561-585, 1991. ,
Identification of the Rhodobacter sphaeroides SOS box, Molecular Microbiology, vol.6, issue.5, pp.991-1003, 1998. ,
DOI : 10.1111/j.1365-2958.1992.tb00847.x
A Green Nonsulfur Bacterium, Dehalococcoides ethenogenes, with the LexA Binding Sequence Found in Gram-Positive Organisms, Journal of Bacteriology, vol.184, issue.21, pp.6073-6080, 2002. ,
DOI : 10.1128/JB.184.21.6073-6080.2002
Identification of additional genes belonging to the LexA regulon in Escherichia coli, Molecular Microbiology, vol.180, issue.6, pp.1560-1572, 2000. ,
DOI : 10.1073/pnas.83.15.5469
CONTAMINATION OF SURFACE, GROUND, AND DRINKING WATER FROM PHARMACEUTICAL PRODUCTION, Environmental Toxicology and Chemistry, vol.28, issue.12, pp.2522-2527, 2009. ,
DOI : 10.1897/09-073.S1
A fork-clearing role for UvrD, Molecular Microbiology, vol.73, issue.6, pp.1664-1675, 2005. ,
DOI : 10.1016/0300-9084(91)90196-8
Leptospira interrogans serovar Copenhageni Harbors Two lexA Genes Involved in SOS Response, PLoS ONE, vol.33, issue.10, p.76419, 2013. ,
DOI : 10.1371/journal.pone.0076419.s007
URL : http://doi.org/10.1371/journal.pone.0076419
Oxidation of the Guanine Nucleotide Pool Underlies Cell Death by Bactericidal Antibiotics, Science, vol.2, issue.7073, pp.315-319, 2012. ,
DOI : 10.1016/j.molcel.2005.01.012
Specialized DNA Polymerases, Cellular Survival, and the Genesis of Mutations, Science, vol.296, issue.5573, pp.1627-1630, 2002. ,
DOI : 10.1126/science.1070236
RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis, The EMBO Journal, vol.11, issue.24, pp.5754-5763, 2006. ,
DOI : 10.1016/0921-8777(93)90024-B
URL : http://emboj.embopress.org/content/embojnl/25/24/5754.full.pdf
R-loop-mediated genomic instability is caused by impairment of replication fork progression, Genes & Development, vol.25, issue.19, pp.2041-2056, 2011. ,
DOI : 10.1101/gad.17010011
The ??E stress response is required for stress-induced mutation and amplification in Escherichia coli, Molecular Microbiology, vol.53, issue.2, pp.415-430, 2010. ,
DOI : 10.1101/SQB.1979.043.01.095
SOS involvement in stress-inducible biofilm formation, Biofouling, vol.48, issue.5, pp.603-611, 2010. ,
DOI : 10.1038/35101627
The SOS Response Controls Integron Recombination, Science, vol.9, issue.5, p.1034, 2009. ,
DOI : 10.1016/j.mib.2006.07.002
URL : https://hal.archives-ouvertes.fr/hal-00409031
Selection of Resistant Bacteria at Very Low Antibiotic Concentrations, PLoS Pathogens, vol.21, issue.7, p.1002158, 2011. ,
DOI : 10.1371/journal.ppat.1002158.s003
Bacteria with increased mutation frequency and antibioticresistance are enriched in the commensal flora of patients with high antibiotic usage, Journal of Antimicrobial Chemotherapy, vol.52, issue.4, pp.645-650, 2003. ,
DOI : 10.1093/jac/dkg427
??-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity, Nature Communications, vol.22, pp.1610-1640 ,
DOI : 10.1111/j.1365-2958.1996.tb02664.x
Net Changes in Antibiotic Concentrations Downstream from an Effluent Discharge, Journal of Environment Quality, vol.38, issue.1, pp.343-352, 2009. ,
DOI : 10.2134/jeq2007.0540
Quorum sensing controls biofilm formation in Vibrio cholerae, Molecular Microbiology, vol.99, issue.1, pp.101-104, 2003. ,
DOI : 10.1128/jb.173.13.4039-4048.1991
Key Role of Mfd in the Development of Fluoroquinolone Resistance in Campylobacter jejuni, PLoS Pathogens, vol.37, issue.6, p.1000083, 2008. ,
DOI : 10.1371/journal.ppat.1000083.t002
ABSTRACT, Antimicrobial Agents and Chemotherapy, vol.57, issue.8, pp.3752-3762, 2013. ,
DOI : 10.1128/AAC.02096-12
Collisions between Replication and Transcription Complexes Cause Common Fragile Site Instability at the Longest Human Genes, Molecular Cell, vol.44, issue.6, pp.966-977, 2011. ,
DOI : 10.1016/j.molcel.2011.10.013
Transcription-replication encounters, consequences and genomic instability, Nature Structural & Molecular Biology, vol.269, issue.4, pp.412-418, 2013. ,
DOI : 10.1126/science.1280856
Formation, Prevention, and Repair of DNA Damage by Iron/Hydrogen Peroxide, Journal of Biological Chemistry, vol.263, issue.6 suppl., pp.19095-19098, 1997. ,
DOI : 10.1074/jbc.271.44.27536
-mediated Fenton Reactions Has Possible Biological Implications, Journal of Biological Chemistry, vol.266, issue.2, pp.962-971, 1999. ,
DOI : 10.1074/jbc.273.24.14683
URL : http://www.jbc.org/content/274/2/962.full.pdf
Metronidazole increases the emergence of ciprofloxacin- and amikacin-resistant Pseudomonas aeruginosa by inducing the SOS response, Journal of Antimicrobial Chemotherapy, vol.3, issue.6, 2013. ,
DOI : 10.1371/journal.pbio.0030176
URL : https://hal.archives-ouvertes.fr/hal-00926039
Evidence for Induction of Integron-Based Antibiotic Resistance by the SOS Response in a Clinical Setting, PLoS Pathogens, vol.47, issue.6, p.1002778, 2012. ,
DOI : 10.1371/journal.ppat.1002778.s008
URL : https://hal.archives-ouvertes.fr/hal-00802793
Aminoglycoside antibiotics induce bacterial biofilm formation, Nature, vol.171, issue.7054, pp.1171-1175, 2005. ,
DOI : 10.1128/jb.171.12.6649-6655.1989
Selection of resistance at lethal and non-lethal antibiotic concentrations, Current Opinion in Microbiology, vol.15, issue.5, pp.555-560, 2012. ,
DOI : 10.1016/j.mib.2012.07.005
Repair of cis-platinum-DNA adducts by ABC excinuclease in vivo and in vitro, J Bacteriol, vol.163, pp.817-823, 1985. ,
Pathways of Oxidative Damage, Annual Review of Microbiology, vol.57, issue.1, pp.395-418, 2003. ,
DOI : 10.1146/annurev.micro.57.030502.090938
DNA damage by reactive species: Mechanisms, mutation and repair, Journal of Biosciences, vol.439, issue.3, pp.503-517, 2012. ,
DOI : 10.1038/nature04561
Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1, Molecular Microbiology, vol.131, issue.1, pp.338-349, 2006. ,
DOI : 10.1186/1471-2180-5-17
URL : https://hal.archives-ouvertes.fr/hal-00079723
Inverse Correlation between Promoter Strength and Excision Activity in Class 1 Integrons, PLoS Genetics, vol.314, issue.1, p.1000793, 2010. ,
DOI : 10.1371/journal.pgen.1000793.s004
URL : https://hal.archives-ouvertes.fr/inserm-00533193
Antibiotic-induced biofilm formation, The International Journal of Artificial Organs, vol.34, issue.9, pp.737-751, 2011. ,
DOI : 10.5301/ijao.5000027
Extracellular DNA-dependent biofilm formation by Staphylococcus epidermidis RP62A in response to subminimal inhibitory concentrations of antibiotics, Research in Microbiology, vol.162, issue.5, pp.535-541, 2011. ,
DOI : 10.1016/j.resmic.2011.03.008
Ham22, a mini-F mutation which is lethal to host cell and promotes recA-dependent induction of lambdoid prophage, EMBO J, vol.2, pp.1863-1868, 1983. ,
Exposure of Clinical MRSA Heterogeneous Strains to ??-Lactams Redirects Metabolism to Optimize Energy Production through the TCA Cycle, PLoS ONE, vol.183, issue.8, p.71025, 2013. ,
DOI : 10.1371/journal.pone.0071025.s005
Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon, Molecular Microbiology, vol.9, issue.5, pp.1228-1238, 2006. ,
DOI : 10.1086/315239
Killing by Bactericidal Antibiotics Does Not Depend on Reactive Oxygen Species, Science, vol.485, issue.7399, pp.1213-1216, 2013. ,
DOI : 10.1038/485439a
RecA recruits SMC-like RecN to DNA double-strand breaks, J Biol Chem, 2013. ,
Superoxide accelerates DNA damage by elevating free-iron levels, Proceedings of the National Academy of Sciences, vol.295, issue.2, pp.13635-13640, 1996. ,
DOI : 10.1016/0003-9861(92)90513-V
URL : http://www.pnas.org/content/93/24/13635.full.pdf
Summary, Journal of Integrative Bioinformatics, vol.5, issue.1, 2008. ,
DOI : 10.1515/jib-2008-86
Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli, Mol Genet Genomics, vol.266, pp.207-215, 2001. ,
Vibrio cholerae LexA Coordinates CTX Prophage Gene Expression, Journal of Bacteriology, vol.191, issue.22, pp.6788-6795, 2009. ,
DOI : 10.1128/JB.00682-09
URL : http://jb.asm.org/content/191/22/6788.full.pdf
ABSTRACT, Antimicrobial Agents and Chemotherapy, vol.56, issue.4, pp.1725-1734, 2012. ,
DOI : 10.1128/AAC.05874-11
How antibiotics kill bacteria: from targets to networks, Nature Reviews Microbiology, vol.106, issue.6, pp.423-435, 2010. ,
DOI : 10.1038/nrmicro1949
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896384/pdf
Sublethal Antibiotic Treatment Leads to Multidrug Resistance via Radical-Induced Mutagenesis, Molecular Cell, vol.37, issue.3, pp.311-320, 2010. ,
DOI : 10.1016/j.molcel.2010.01.003
URL : https://doi.org/10.1016/j.molcel.2010.01.003
A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics, Cell, vol.130, issue.5, pp.797-810, 2007. ,
DOI : 10.1016/j.cell.2007.06.049
Trashing of Single-Stranded DNA Generated during Processing of Arrested Replication Fork in E. coli, Journal of Molecular Biology, vol.425, issue.23, 2013. ,
DOI : 10.1016/j.jmb.2013.06.027
URL : https://hal.archives-ouvertes.fr/hal-00879896
Structural insight into LexA-RecA* interaction, Nucleic acids research, 2013. ,
Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans, Proceedings of the National Academy of Sciences, vol.193, issue.1, pp.14373-14377, 2010. ,
DOI : 10.1038/ismej.2007.116
URL : http://www.pnas.org/content/107/32/14373.full.pdf
Antibiotics in the aquatic environment ??? A review ??? Part II, Chemosphere, vol.75, issue.4, pp.435-441, 2009. ,
DOI : 10.1016/j.chemosphere.2008.12.006
Antibiotics in the aquatic environment ??? A review ??? Part I, Chemosphere, vol.75, issue.4, pp.417-434, 2009. ,
DOI : 10.1016/j.chemosphere.2008.11.086
Stimulation of the UvrABC enzyme-catalyzed repair reactions by the UvrD protein (DNA helicase II), Nucleic Acids Research, vol.13, issue.5, pp.1483-1492, 1985. ,
DOI : 10.1093/nar/13.5.1483
Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli, Molecular Microbiology, vol.99, issue.2, pp.549-561, 2003. ,
DOI : 10.1073/pnas.092269199
The Helicobacter pylori Mfd protein is important for antibiotic resistance and DNA repair, Diagn Microbiol Infect Dis, vol.65, pp.454-456, 2009. ,
Diversity of bacterial type II toxin???antitoxin systems: a comprehensive search and functional analysis of novel families, Nucleic Acids Research, vol.293, issue.13, pp.5513-5525, 2011. ,
DOI : 10.1371/journal.pbio.0030248
UvrD controls the access of recombination proteins to blocked replication forks, The EMBO Journal, vol.134, issue.16, pp.3804-3814, 2007. ,
DOI : 10.1038/sj.emboj.7601804
Diversity and relative strength of tandem promoters for the antibiotic-resistance genes of several integron, Gene, vol.142, issue.1, pp.49-54, 1994. ,
DOI : 10.1016/0378-1119(94)90353-0
The role of the SOS response in bacteria exposed to zidovudine or trimethoprim, Journal of Medical Microbiology, vol.34, issue.6, pp.329-332, 1991. ,
DOI : 10.1099/00222615-34-6-329
Persister Cells, Annual Review of Microbiology, vol.64, issue.1, 2010. ,
DOI : 10.1146/annurev.micro.112408.134306
Cell Death from Antibiotics Without the Involvement of Reactive Oxygen Species, Science, vol.266, issue.3, pp.1210-1213, 2013. ,
DOI : 10.1111/j.1365-2958.2010.07418.x
Extent of antibiotic use in Taiwan shown by antimicrobial activity in urine, The Lancet, vol.354, issue.9187, p.1360, 1999. ,
DOI : 10.1016/S0140-6736(99)07446-2
Detection of Antimicrobial Activity in Urine for Epidemiologic Studies of Antibiotic Use, Journal of Clinical Epidemiology, vol.52, issue.6, pp.539-545, 1999. ,
DOI : 10.1016/S0895-4356(99)00027-X
Effect of Subinhibitory Concentrations of Antibiotics on Intrachromosomal Homologous Recombination in Escherichia coli, Antimicrobial Agents and Chemotherapy, vol.53, issue.8, pp.3411-3415, 2009. ,
DOI : 10.1128/AAC.00358-09
Repair of Oxidative DNA Damage: Mechanisms and Functions, Cell Biochemistry and Biophysics, vol.35, issue.2, pp.141-170, 2001. ,
DOI : 10.1385/CBB:35:2:141
Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy, Proceedings of the National Academy of Sciences, vol.6, issue.1, pp.4629-4634, 2009. ,
DOI : 10.1371/journal.pbio.0060010
URL : http://www.pnas.org/content/106/12/4629.full.pdf
The DinI and RecX Proteins Are Competing Modulators of RecA Function, Journal of Biological Chemistry, vol.261, issue.53, pp.55073-55079, 2004. ,
DOI : 10.1073/pnas.131007498
Catabolite repression of SOS-dependent and SOS-independent spontaneous mutagenesis in stationary-phase Escherichia coli, Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, vol.686, issue.1-2, pp.84-89, 2010. ,
DOI : 10.1016/j.mrfmmm.2010.01.022
??-Lactam Antibiotics Induce the SOS Response and Horizontal Transfer of Virulence Factors in Staphylococcus aureus, Journal of Bacteriology, vol.188, issue.7, pp.2726-2729, 2006. ,
DOI : 10.1128/JB.188.7.2726-2729.2006
Ribonuclease E Modulation of the Bacterial SOS Response, PLoS ONE, vol.276, issue.6, p.38426, 2012. ,
DOI : 10.1371/journal.pone.0038426.s003
DNA Topoisomerase I Inhibits R-loop Formation by Relaxing Transcription-induced Negative Supercoiling, Journal of Biological Chemistry, vol.175, issue.23, pp.16659-16664, 1999. ,
DOI : 10.1021/bi00167a044
Factors Limiting SOS Expression in Log-Phase Cells of Escherichia coli, Journal of Bacteriology, vol.194, issue.19, pp.5325-5333, 2012. ,
DOI : 10.1128/JB.00674-12
Integrons: agents of bacterial evolution, Nature Reviews Microbiology, vol.91, issue.8, pp.608-620, 2006. ,
DOI : 10.1073/pnas.91.20.9218
Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene, Microbiology, vol.152, issue.4, pp.1109-1118, 2006. ,
DOI : 10.1099/mic.0.28376-0
LexA-binding sequences in Gram-positive and cyanobacteria are closely related, Molecular Genetics and Genomics, vol.271, issue.1, pp.40-49, 2004. ,
DOI : 10.1007/s00438-003-0952-x
Reconstruction of the evolutionary history of the LexA-binding sequence, Microbiology, vol.150, issue.11, pp.3783-3795, 2004. ,
DOI : 10.1099/mic.0.27315-0
Mutagenic spectrum resulting from DNA damage by oxygen radicals, Biochemistry, vol.30, issue.1, pp.207-213, 1991. ,
DOI : 10.1021/bi00215a030
The conflict between DNA replication and transcription, Molecular Microbiology, vol.14, issue.1, pp.12-20, 2012. ,
DOI : 10.1016/0092-8674(88)90163-8
Phenotypic differentiation of "smart" versus "naive" bacteriophages of Bacillus subtilis., Journal of Bacteriology, vol.178, issue.11, pp.3399-3401, 1996. ,
DOI : 10.1128/jb.178.11.3399-3401.1996
Growth Phase and (p)ppGpp Control of IraD, a Regulator of RpoS Stability, in Escherichia coli, Journal of Bacteriology, vol.191, issue.24, pp.7436-7446, 2009. ,
DOI : 10.1128/JB.00412-09
Replication???transcription conflicts in bacteria, Nature Reviews Microbiology, vol.396, issue.7, pp.449-458, 2012. ,
DOI : 10.1016/j.bbrc.2010.04.119
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467967/pdf
A DNA damage response in Escherichia coli involving the alternative sigma factor, RpoS, Proceedings of the National Academy of Sciences, vol.60, issue.1, pp.611-616, 2009. ,
DOI : 10.1111/j.1365-2958.2006.05093.x
Phenotypic changes in ciprofloxacin-resistant Staphylococcus aureus, Research in Microbiology, vol.160, issue.10, pp.785-791, 2009. ,
DOI : 10.1016/j.resmic.2009.09.013
Effects of Subinhibitory Concentrations of Antibiotics on SOS and DNA Repair Gene Expression in Staphylococcus aureus, Antimicrobial Agents and Chemotherapy, vol.52, issue.9, pp.3394-3397, 2008. ,
DOI : 10.1128/AAC.01599-07
After 30 Years of Study, the Bacterial SOS Response Still Surprises Us, PLoS Biology, vol.305, issue.7, p.255, 2005. ,
DOI : 10.1371/journal.pbio.0030255.g002
Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli, Molecular Microbiology, vol.31, issue.1, 2012. ,
DOI : 10.1093/nar/gkg595
DpiA Binding to the Replication Origin of Escherichia coli Plasmids and Chromosomes Destabilizes Plasmid Inheritance and Induces the Bacterial SOS Response, Journal of Bacteriology, vol.185, issue.20, pp.6025-6031, 2003. ,
DOI : 10.1128/JB.185.20.6025-6031.2003
SOS Response Induction by ??-Lactams and Bacterial Defense Against Antibiotic Lethality, Science, vol.305, issue.5690, pp.1629-1631, 2004. ,
DOI : 10.1126/science.1101630
Escherichia coli DinB inhibits replication fork progression without significantly inducing the SOS response, Genes ^|^ Genetic Systems, vol.87, issue.2, pp.75-87, 2012. ,
DOI : 10.1266/ggs.87.75
All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis, The EMBO Journal, vol.19, issue.22, pp.6259-6265, 2000. ,
DOI : 10.1093/emboj/19.22.6259
URL : http://embojnl.embopress.org/content/embojnl/19/22/6259.full.pdf
The LexA Protein from Deinococcus radiodurans Is Not Involved in RecA Induction following gamma Irradiation, Journal of Bacteriology, vol.183, issue.23, pp.6951-6956, 2001. ,
DOI : 10.1128/JB.183.23.6951-6956.2001
Effects of Subinhibitory Concentrations of Antimicrobial Agents on Escherichia coli O157:H7 Shiga Toxin Release and Role of the SOS Response, Foodborne pathogens and disease, 2013. ,
Fluence-Response Dynamics of the UV-Induced SOS Response in Escherichia coli, Current Microbiology, vol.15, issue.6, pp.521-526, 2008. ,
DOI : 10.1016/S0076-6879(06)08020-7
RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and posttranslational activation., Proceedings of the National Academy of Sciences, vol.85, issue.6, pp.1816-1820, 1988. ,
DOI : 10.1073/pnas.85.6.1816
URL : http://www.pnas.org/content/85/6/1816.full.pdf
Antibiotic Resistance Acquired through a DNA Damage-Inducible Response in Acinetobacter baumannii, Journal of Bacteriology, vol.195, issue.6, pp.1335-1345, 2013. ,
DOI : 10.1128/JB.02176-12
Comparison of Macromolecular Oxidation by Reactive Oxygen Species in Three Bacterial Genera Exposed to Different Antibiotics, Cell Biochemistry and Biophysics, vol.4, issue.3, pp.467-472, 2011. ,
DOI : 10.1038/sj.embor.embor799
Uncoupling of Leading- and Lagging-Strand DNA Replication During Lesion Bypass in Vivo, Science, vol.300, issue.5623, pp.1300-1303, 2003. ,
DOI : 10.1126/science.1083964
recX, a new SOS gene that is co-transcribed with the recA gene in Escherichia coli, DNA Repair, vol.2, issue.3, pp.273-284, 2003. ,
DOI : 10.1016/S1568-7864(02)00217-3
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes, Nucleic Acids Research, vol.33, issue.3, pp.966-976, 2005. ,
DOI : 10.1093/nar/gki201
Gene cassettes and cassette arrays in mobile resistance integrons, FEMS Microbiology Reviews, vol.16, issue.4, pp.757-784, 2009. ,
DOI : 10.1128/AAC.01313-08
URL : https://academic.oup.com/femsre/article-pdf/33/4/757/18141700/33-4-757.pdf
Spontaneous DNA breakage in single living Escherichia coli cells, Nature Genetics, vol.64, issue.6, pp.797-802, 2007. ,
DOI : 10.1073/pnas.0606499103
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2856310/pdf
An SOS Inhibitor that Binds to Free RecA Protein: The PsiB Protein, Molecular Cell, vol.36, issue.1, pp.121-130, 2009. ,
DOI : 10.1016/j.molcel.2009.07.026
Targeting of PBP1 by ??-lactams Determines recA/SOS Response Activation in Heterogeneous MRSA Clinical Strains, PLoS ONE, vol.175, issue.4, p.61083, 2013. ,
DOI : 10.1371/journal.pone.0061083.t004
R We There Yet? R-Loop Hazards to Finishing the Journey, Molecular Cell, vol.44, issue.6, pp.848-850, 2011. ,
DOI : 10.1016/j.molcel.2011.12.003
Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation, Science, vol.180, issue.3, pp.504-508, 2010. ,
DOI : 10.1016/0022-2836(84)90027-5
LexA Cleavage Is Required for CTX Prophage Induction, Molecular Cell, vol.17, issue.2, pp.291-300, 2005. ,
DOI : 10.1016/j.molcel.2004.11.046
URL : https://doi.org/10.1016/j.molcel.2004.11.046
SOS Repair Hypothesis: Phenomenology of an Inducible DNA Repair Which is Accompanied by Mutagenesis, Basic life sciences, vol.5, pp.355-367, 1975. ,
DOI : 10.1007/978-1-4684-2895-7_48
Localization of Fe2+ at an RTGR sequence within a DNA duplex explains preferential cleavage by Fe2+ and H2O211Edited by M. F. Summers, Journal of Molecular Biology, vol.312, issue.5, pp.1089-1101, 2001. ,
DOI : 10.1006/jmbi.2001.5010
Molecular Mechanisms of Ultraviolet Radiation-Induced DNA Damage and Repair, Journal of Nucleic Acids, vol.8, issue.12, p.592980, 2010. ,
DOI : 10.1126/science.283.5404.1001
Mfd, the bacterial transcription repair coupling factor: translocation, repair and termination, Current Opinion in Microbiology, vol.7, issue.2, pp.120-125, 2004. ,
DOI : 10.1016/j.mib.2004.02.014
The Escherichia coli SOS Gene dinF Protects against Oxidative Stress and Bile Salts, PLoS ONE, vol.24, issue.4, p.34791, 2012. ,
DOI : 10.1371/journal.pone.0034791.t001
Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics, Proceedings of the National Academy of Sciences, vol.11, issue.1, pp.10555-10560, 2002. ,
DOI : 10.1063/1.1349892
Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans, Microbiology, vol.152, issue.11, pp.3217-3226, 2006. ,
DOI : 10.1099/mic.0.29139-0
The role of Deinococcus radiodurans RecFOR proteins in homologous recombination, DNA Repair, vol.11, issue.4, pp.410-418, 2012. ,
DOI : 10.1016/j.dnarep.2012.01.008
The molecular mechanism of transcription-coupled DNA repair, Trends in Microbiology, vol.15, issue.7, pp.326-333, 2007. ,
DOI : 10.1016/j.tim.2007.05.005
Fenton reactions in lipid phases, Lipids, vol.59, issue.6, pp.570-579, 1988. ,
DOI : 10.1002/ijch.198300064
Opposing effects of aminocoumarins and fluoroquinolones on the SOS response and adaptability in Staphylococcus aureus, Journal of Antimicrobial Chemotherapy, vol.78, issue.6, pp.529-538, 2013. ,
DOI : 10.1128/IAI.00088-10
Knockdown of recA gene expression by artificial small RNAs in Escherichia coli, Biochemical and Biophysical Research Communications, vol.430, issue.1, pp.256-259, 2013. ,
DOI : 10.1016/j.bbrc.2012.10.141
Stress-induced Condensation of Bacterial Genomes Results in Re-pairing of Sister Chromosomes, Journal of Biological Chemistry, vol.510, issue.35, 2013. ,
DOI : 10.1126/science.1077865
What Limits the Efficiency of Double-Strand Break-Dependent Stress-Induced Mutation in <i>Escherichia coli</i>?, Journal of Molecular Microbiology and Biotechnology, vol.4, issue.1-2, pp.8-19, 2011. ,
DOI : 10.1371/journal.pgen.1000264
An SOS-Regulated Type 2 Toxin-Antitoxin System, Journal of Bacteriology, vol.191, issue.24, pp.7456-7465, 2009. ,
DOI : 10.1128/JB.00963-09
URL : http://jb.asm.org/content/191/24/7456.full.pdf
Photodynamic degradation of guanine, Biochemical and Biophysical Research Communications, vol.16, issue.3, pp.263-266, 1964. ,
DOI : 10.1016/0006-291X(64)90337-7
cAMP-dependent SOS induction and mutagenesis in resting bacterial populations., Proceedings of the National Academy of Sciences, vol.92, issue.25, pp.11736-11740, 1995. ,
DOI : 10.1073/pnas.92.25.11736
URL : http://europepmc.org/articles/pmc40477?pdf=render
Mutational analysis of the Rhizobium etli recA operator, J Bacteriol, vol.180, pp.6325-6331, 1998. ,
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci, Molecular Microbiology, vol.181, issue.3, pp.836-844, 2005. ,
DOI : 10.1086/315239
Fuse or die: how to survive the loss of Dam in Vibrio cholerae Bacterial SOS response: a food safety perspective, Mol Microbiol. van der Veen S & Abee T Curr Opin Biotechnol, vol.22, pp.136-142, 2011. ,
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites, Genes & Development, vol.19, issue.21, pp.2619-2630, 2005. ,
DOI : 10.1101/gad.1355605
A component of gamma-radiation-induced cell death in E. coli is programmed and interlinked with activation of caspase-3 and SOS response, Archives of Microbiology, vol.183, issue.12, 2013. ,
DOI : 10.1128/JB.183.15.4562-4570.2001
The SOS Response of Escherichia coli. Escherichia coli and Salmonella, American Society of Microbiology, vol.1, pp.1400-1416, 1996. ,
R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli, Nature communications, vol.4, p.2115, 2013. ,
DOI : 10.1038/ncomms3115
URL : http://www.nature.com/articles/ncomms3115.pdf
The Bacillus subtilis DinR binding site: redefinition of the consensus sequence, J Bacteriol, vol.180, pp.2201-2211, 1998. ,
Transformation and transfection in lysogenic strains of Bacillus subtilis: evidence for selective induction of prophage in competent cells, J Bacteriol, vol.121, pp.296-304, 1975. ,
Inhibition of Escherichia coli RecA coprotease activities by DinI, The EMBO Journal, vol.17, issue.11, pp.3207-3216, 1998. ,
DOI : 10.1093/emboj/17.11.3207
Modulation of Salmonella gene expression by subinhibitory concentrations of quinolones, The Journal of Antibiotics, vol.8, issue.1, pp.73-78, 2011. ,
DOI : 10.1371/journal.pbio.0060280
by fluoroquinolones, Mutagenesis, vol.5, issue.1, pp.63-66, 1990. ,
DOI : 10.1093/mutage/5.1.63
Structure of the LexA???DNA complex and implications for SOS box measurement, Nature, vol.35, issue.7308, pp.883-886, 2010. ,
DOI : 10.1038/nature09200
Quorum Sensing-Dependent Biofilms Enhance Colonization in Vibrio cholerae, Developmental Cell, vol.5, issue.4, pp.647-656, 2003. ,
DOI : 10.1016/S1534-5807(03)00295-8
URL : https://doi.org/10.1016/s1534-5807(03)00295-8