A nucleoprotein complex mediates the integration of retroviral DNA., Genes & Development, vol.3, issue.4, pp.469-78, 1989. ,
DOI : 10.1101/gad.3.4.469
Human immunodeficiency virus type 1 preintegration complexes: studies of organization and composition, J Virol, vol.71, pp.5382-90, 1997. ,
HIV-1 DNA integration: Mechanism of viral DNA cleavage and DNA strand transfer, Cell, vol.67, issue.6, pp.1211-1232, 1991. ,
DOI : 10.1016/0092-8674(91)90297-C
Retroviral DNA integration, Microbiol Mol Biol Rev, vol.63, pp.836-879, 1999. ,
Recombinant Human Immunodeficiency Virus Type 1 Integrase Exhibits a Capacity for Full-Site Integration In Vitro That Is Comparable to That of Purified Preintegration Complexes from Virus-Infected Cells, Journal of Virology, vol.79, issue.13, pp.8208-8224, 2005. ,
DOI : 10.1128/JVI.79.13.8208-8216.2005
Efficient Concerted Integration by Recombinant Human Immunodeficiency Virus Type 1 Integrase without Cellular or Viral Cofactors, Journal of Virology, vol.76, issue.7, pp.3105-3118, 2002. ,
DOI : 10.1128/JVI.76.7.3105-3113.2002
Retroviral intasome assembly and inhibition of DNA strand transfer, Nature, vol.25, issue.7286, pp.326-335, 2010. ,
DOI : 10.1038/nature08784
The mechanism of retroviral integration from X-ray structures of its key intermediates, Nature, vol.14, issue.7321, pp.326-335, 2010. ,
DOI : 10.1038/nature09517
Piecing together the structure of retroviral integrase, an important target in AIDS therapy, FEBS Journal, vol.25, issue.Suppl. 1, pp.2926-2972, 2009. ,
DOI : 10.1111/j.1742-4658.2009.07009.x
Retroviral Integrase Proteins and HIV-1 DNA Integration, Journal of Biological Chemistry, vol.287, issue.49, pp.40858-66, 2012. ,
DOI : 10.1074/jbc.R112.397760
Functional Oligomeric State of Avian Sarcoma Virus Integrase, Journal of Biological Chemistry, vol.278, issue.2, pp.1323-1330, 2003. ,
DOI : 10.1074/jbc.C200550200
HIV-1 integrase crosslinked oligomers are active in vitro, Nucleic Acids Research, vol.33, issue.3, pp.977-86, 2005. ,
DOI : 10.1093/nar/gki241
Retroviral DNA integration: reaction pathway and critical intermediates, The EMBO Journal, vol.65, issue.6, pp.1295-304, 2006. ,
DOI : 10.1016/S0960-894X(03)00059-3
Structural basis for HIV-1 DNA integration in the human genome, role of the LEDGF/P75 cofactor, The EMBO Journal, vol.269, issue.7, pp.980-91, 2009. ,
DOI : 10.1073/pnas.93.24.13659
URL : https://hal.archives-ouvertes.fr/inserm-00384501
Single-particle Image Reconstruction of a Tetramer of HIV Integrase Bound to DNA, Journal of Molecular Biology, vol.366, issue.1, pp.286-94, 2007. ,
DOI : 10.1016/j.jmb.2006.11.029
Cellular co-factors of HIV-1 integration, Trends in Biochemical Sciences, vol.31, issue.2, pp.98-105, 2006. ,
DOI : 10.1016/j.tibs.2005.12.002
Acetylation of HIV-1 integrase by p300 regulates viral integration, The EMBO Journal, vol.300, issue.17, pp.3070-81, 2005. ,
DOI : 10.1038/sj.emboj.7600770
Impairment of Human Immunodeficiency Virus Type-1 Integrase SUMOylation Correlates with an Early Replication Defect, Journal of Biological Chemistry, vol.286, issue.23, pp.21013-21035, 2011. ,
DOI : 10.1074/jbc.M110.189274
HIV reproducibly establishes a latent infection after acute infection of T cells in vitro, The EMBO Journal, vol.22, issue.8, pp.1868-77, 2003. ,
DOI : 10.1093/emboj/cdg188
The site of HIV-1 integration in the human genome determines basal transcriptional activity and response to Tat transactivation, The EMBO Journal, vol.20, issue.7, pp.1726-1764, 2001. ,
DOI : 10.1093/emboj/20.7.1726
Molecular mechanisms of HIV-1 proviral latency, Expert Review of Anti-infective Therapy, vol.3, issue.5, pp.805-819, 2005. ,
DOI : 10.1586/14787210.3.5.805
Transcriptional competence of the integrated HIV-1 provirus at the nuclear periphery, The EMBO Journal, vol.166, issue.15, pp.2231-2274, 2009. ,
DOI : 10.1038/emboj.2009.141
Resting CD4+ T Cells from Human Immunodeficiency Virus Type 1 (HIV-1)-Infected Individuals Carry Integrated HIV-1 Genomes within Actively Transcribed Host Genes, Journal of Virology, vol.78, issue.12, pp.6122-6155, 2004. ,
DOI : 10.1128/JVI.78.12.6122-6133.2004
Nuclear positional control of HIV transcription in 4D, Nucleus, vol.114, issue.1, pp.8-11, 2010. ,
DOI : 10.1016/j.molcel.2007.11.030
Gene therapy of X-linked severe combined immunodeficiency, Methods Mol Biol, vol.215, pp.247-59, 2003. ,
The Lentiviral Integrase Binding Protein LEDGF/p75 and HIV-1 Replication, PLoS Pathogens, vol.4, issue.3, p.1000046, 2008. ,
DOI : 10.1371/journal.ppat.1000046.g004
The BET Family of Proteins Targets Moloney Murine Leukemia Virus Integration near Transcription Start Sites, Cell Reports, vol.5, issue.4, pp.886-94, 2013. ,
DOI : 10.1016/j.celrep.2013.09.040
BET proteins promote efficient murine leukemia virus integration at transcription start sites, Proceedings of the National Academy of Sciences, vol.110, issue.29, pp.12036-12077, 2013. ,
DOI : 10.1073/pnas.1307157110
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3718171
Symmetrical base preferences surrounding HIV-1, avian sarcoma/leukosis virus, and murine leukemia virus integration sites, Proceedings of the National Academy of Sciences, vol.102, issue.17, pp.6103-6110, 2005. ,
DOI : 10.1073/pnas.0501646102
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1087937
LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration, Genes & Development, vol.21, issue.14, pp.1767-78, 2007. ,
DOI : 10.1101/gad.1565107
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920171
Weak Palindromic Consensus Sequences Are a Common Feature Found at the Integration Target Sites of Many Retroviruses, Journal of Virology, vol.79, issue.8, pp.5211-5215, 2005. ,
DOI : 10.1128/JVI.79.8.5211-5214.2005
Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes, Nucleic Acids Research, vol.41, issue.6, pp.3924-3960, 2013. ,
DOI : 10.1093/nar/gkt074
Functional Coupling between HIV-1 Integrase and the SWI/SNF Chromatin Remodeling Complex for Efficient in vitro Integration into Stable Nucleosomes, PLoS Pathogens, vol.16, issue.2, p.1001280, 2011. ,
DOI : 10.1371/journal.ppat.1001280.s010
URL : https://hal.archives-ouvertes.fr/hal-00594715
Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction, Nucleic Acids Research, vol.42, issue.9, pp.5917-5945, 2014. ,
DOI : 10.1093/nar/gku175
Integrase residues that determine nucleotide preferences at sites of HIV-1 integration: implications for the mechanism of target DNA binding, Nucleic Acids Research, vol.42, issue.8, pp.5164-76, 2014. ,
DOI : 10.1093/nar/gku136
Molecular mechanisms of retroviral integration site selection, Nucleic Acids Research, vol.42, issue.16, pp.10209-10234, 2014. ,
DOI : 10.1093/nar/gku769
Determinants of nucleosome organization in primary human cells, Nature, vol.304, issue.7352, pp.516-536, 2011. ,
DOI : 10.1038/nature10002
A Preferred Target DNA Structure for Retroviral Integrasein Vitro, Journal of Biological Chemistry, vol.273, issue.37, pp.24190-24195, 1998. ,
DOI : 10.1074/jbc.273.37.24190
Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core., Proceedings of the National Academy of Sciences, vol.91, issue.13, pp.5913-5920, 1994. ,
DOI : 10.1073/pnas.91.13.5913
The influence of DNA and nucleosome structure on integration events directed by HIV integrase, J Biol Chem, vol.269, pp.25031-25072, 1994. ,
Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection, Cell, vol.69, issue.5, pp.769-80, 1992. ,
DOI : 10.1016/0092-8674(92)90289-O
Retroviral integration into minichromosomes in vitro, EMBO J, vol.11, pp.291-303, 1992. ,
Simian virus 40 minichromosomes as targets for retroviral integration in vivo., Proceedings of the National Academy of Sciences, vol.89, issue.19, pp.9237-9278, 1992. ,
DOI : 10.1073/pnas.89.19.9237
Functional and structural characterization of the integrase from the prototype foamy virus, Nucleic Acids Research, vol.37, issue.1, pp.243-55, 2009. ,
DOI : 10.1093/nar/gkn938
Biochemical and biophysical analyses of concerted (U5/U3) integration, Methods, vol.47, issue.4, pp.229-265, 2008. ,
DOI : 10.1016/j.ymeth.2008.11.002
Nucleoprotein complex intermediates in HIV-1 integration, Methods, vol.47, issue.4, pp.237-279, 2009. ,
DOI : 10.1016/j.ymeth.2009.02.001
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311468
A Novel Co-Crystal Structure Affords the Design of Gain-of-Function Lentiviral Integrase Mutants in the Presence of Modified PSIP1/LEDGF/p75, PLoS Pathogens, vol.81, issue.1, p.1000259, 2009. ,
DOI : 10.1371/journal.ppat.1000259.s005
LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro, Nucleic Acids Research, vol.35, issue.1, pp.113-137, 2007. ,
DOI : 10.1093/nar/gkl885
URL : http://doi.org/10.1093/nar/gkl885
Integrase-Specific Enhancement and Suppression of Retroviral DNA Integration by Compacted Chromatin Structure In Vitro, Journal of Virology, vol.78, issue.11, pp.5848-55, 2004. ,
DOI : 10.1128/JVI.78.11.5848-5855.2004
Nucleosome positioning by genomic excluding-energy barriers, Proceedings of the National Academy of Sciences, vol.106, issue.52, pp.22257-62, 2009. ,
DOI : 10.1073/pnas.0909511106
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2799728
Experiments Confirm the Influence of Genome Long-Range Correlations on Nucleosome Positioning, Physical Review Letters, vol.99, issue.21, p.218103, 2007. ,
DOI : 10.1103/PhysRevLett.99.218103
URL : https://hal.archives-ouvertes.fr/hal-00337710
HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications, Genome Research, vol.17, issue.8, pp.1186-94, 2007. ,
DOI : 10.1101/gr.6286907
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933515
High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors, Blood, vol.116, issue.25, pp.5507-5524, 2010. ,
DOI : 10.1182/blood-2010-05-283523
HIV-1 integration into chromatin: new insights and future perspectives, Future Virology, vol.6, issue.9, pp.1035-1078, 2011. ,
DOI : 10.2217/fvl.11.84
A novel strategy of transcription regulation by intragenic nucleosome ordering, Genome Research, vol.20, issue.1, pp.59-67, 2009. ,
DOI : 10.1101/gr.096644.109
URL : https://hal.archives-ouvertes.fr/hal-00539428
The DNA-encoded nucleosome organization of a eukaryotic genome, Nature, vol.12, issue.7236, pp.362-368, 2009. ,
DOI : 10.1038/nature07667
Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection, PLoS Pathogens, vol.74, issue.6, p.60, 2006. ,
DOI : 10.1371/journal.ppat.0020060.st003
Concerted integration of retrovirus-like DNA by human immunodeficiency virus type 1 integrase ,
Chromatinized templates reveal the requirement for the LEDGF/p75 PWWP domain during HIV-1 integration in vitro, Nucleic Acids Research, vol.36, issue.4, pp.1237-1283, 2008. ,
DOI : 10.1093/nar/gkm1127
Single-Cell Imaging of HIV-1 Provirus (SCIP), Proceedings of the National Academy of Sciences, vol.110, issue.14, pp.5636-5677, 2013. ,
DOI : 10.1073/pnas.1216254110
Architecture of a Full-length Retroviral Integrase Monomer and Dimer, Revealed by Small Angle X-ray Scattering and Chemical Cross-linking, Journal of Biological Chemistry, vol.286, issue.19 ,
DOI : 10.1074/jbc.M110.212571
In vitro initial attachment of HIV-1 integrase to viral ends: control of the DNA specific interaction by the oligomerization state, Nucleic Acids Research, vol.36, issue.22, pp.7043-58, 2008. ,
DOI : 10.1093/nar/gkn796
URL : https://hal.archives-ouvertes.fr/hal-00426343
Crosslinking and mass spectrometry suggest that the isolated NTD domain dimer of Moloney murine leukemia virus integrase adopts a parallel arrangement in solution, BMC Structural Biology, vol.13, issue.1, p.14, 2013. ,
DOI : 10.1002/(SICI)1097-0134(19981201)33:4<535::AID-PROT6>3.0.CO;2-D
Chapter 16 Control of Class II Gene Transcription during in Vitro Nucleosome Assembly, Methods Cell Biol, vol.35, pp.419-466, 1991. ,
DOI : 10.1016/S0091-679X(08)60582-8
Purification and characterization of mSin3A-containing Brg1 and hBrm chromatin remodeling complexes, Genes & Development, vol.15, issue.5, pp.603-621, 2001. ,
DOI : 10.1101/gad.872801