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Journal articles
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
Alexandra Moura
1, 2
Alexis Criscuolo
3
Hannes Pouseele
4
Mylène M. Maury
2
Alexandre Leclercq
2
Cheryl Tarr
5
Jonas T. Björkman
6
Timothy Dallman
7
Aleisha Reimer
8
Vincent Enouf
9
Elise Larsonneur
10, 1, 3
Heather Carleton
5
Hélène Bracq-Dieye
2
Lee S. Katz
5
Louis Jones
3
Marie Touchon
1
Mathieu Tourdjman
11
Matthew Walker
8
Steven Stroika
5
Thomas Cantinelli
2
Viviane Chenal-Francisque
2
Zuzana Kucerova
5
Eduardo P. C. Rocha
1
Celine Nadon
7
Kathie Grant
7
Eva M. Nielsen
6
Bruno Pot
4
Peter Gerner-Smidt
5
Marc Lecuit
2, 12, 13, 14, 15, *
Sylvain Brisse
1, *
*
Corresponding author
Alexandra Moura 1, 2
Author IdHAL : alexandra-moura
Alexis Criscuolo 3
Author IdHAL : alexis-criscuolo ORCID : https://orcid.org/0000-0002-8212-5215
Hannes Pouseele 4
Author
Mylène M. Maury 2
Author
Alexandre Leclercq 2
Author IdHAL : alexandre-leclercq ResearcherId : http://www.researcherid.com/rid/H-2140-2018 ORCID : https://orcid.org/0000-0003-3778-7313
Cheryl Tarr 5
Author
Jonas T. Björkman 6
Author
Timothy Dallman 7
Author
Aleisha Reimer 8
Author
Vincent Enouf 9
Author IdHAL : venouf ORCID : https://orcid.org/0000-0001-7609-4742
Elise Larsonneur 10, 1, 3
Author
Heather Carleton 5
Author
Hélène Bracq-Dieye 2
Author
Lee S. Katz 5
Author
Louis Jones 3
Author
Marie Touchon 1
Author IdHAL : marie-touchon ORCID : https://orcid.org/0000-0001-7389-447X
Mathieu Tourdjman 11
Author
Matthew Walker 8
Author
Steven Stroika 5
Author
Thomas Cantinelli 2
Author
Viviane Chenal-Francisque 2
Author IdHAL : vchenalfrancisque ORCID : https://orcid.org/0000-0002-8190-8875
Zuzana Kucerova 5
Author
Eduardo P. C. Rocha 1
Author IdHAL : epcrocha ORCID : https://orcid.org/0000-0001-7704-822X
Celine Nadon 7
Author
Marc Lecuit 2, 12, 13, 14, 15
Correspondent author
Sylvain Brisse 1
Correspondent author IdHAL : sylvain-brisse ORCID : https://orcid.org/0000-0002-2516-2108
1
Génomique évolutive des Microbes / Microbial Evolutionary Genomics (Département Génomes et Génétique - 25-28 rue du docteur Roux, F-75724 Paris Cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
- CNRS - Centre National de la Recherche Scientifique : UMR3525 (France)
2
CNRL - Centre National de Référence Listeria - Biologie des Infections (Département de Biologie cellulaire et Infection, 25-28 rue docteur Roux, 75724 Paris Cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
- INSERM - Institut National de la Santé et de la Recherche Médicale : U1117 (101, rue de Tolbiac, 75013 Paris - France)
3
Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB (C3BI, 25-28 rue du Docteur Roux, 75724 Paris cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
- CNRS - Centre National de la Recherche Scientifique : USR3756 (France)
4
Applied-Maths (9830 Sint-Martens-Latem - Belgium)
5
CDC - Centers for Disease Control and Prevention [Atlanta] (1600 Clifton Rd. GA 30333 Atlanta, GA - United States)
- Centers for Disease Control and Prevention (United States)
6
Statens Serum Institut [Copenhagen] (5 Artillerivej
DK 2300 Copenhagen - Denmark)
7
Public Health England [London] (Wellington House , 133-155 Waterloo Road, London SE1 8UG - United Kingdom)
8
Public Health Agency of Canada (Canada)
9
PIBNet - Pasteur International Bioresources network (France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
10
IFB-CORE - Institut Français de Bioinformatique - UMS CNRS 3601 (Institut Français de Bioinformatique - UMS CNRS 3601
F- Gif-sur-Yvette - France)
- INRA - Institut National de la Recherche Agronomique (France)
- Inria - Institut National de Recherche en Informatique et en Automatique (Domaine de Voluceau Rocquencourt - BP 105 78153 Le Chesnay Cedex - France)
- CEA - Commissariat à l'énergie atomique et aux énergies alternatives : DSV (Centre de Saclay Centre de Grenoble Centre de Cadarache etc - France)
- INSERM - Institut National de la Santé et de la Recherche Médicale (101, rue de Tolbiac, 75013 Paris - France)
- CNRS - Centre National de la Recherche Scientifique : UMS 3601 (France)
11
INVS - Institut de Veille Sanitaire (12 rue du Val d'Osne, 94415 Saint Maurice Cedex, France - France)
12
CCOMS - Centre collaborateur de l'OMS Listeria - Biologie des Infections (Département de Biologie cellulaire et Infection, 25-28 rue docteur Roux, 75724 Paris Cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
- INSERM - Institut National de la Santé et de la Recherche Médicale : U1117 (101, rue de Tolbiac, 75013 Paris - France)
13
Biologie des Infections - Biology of Infection (Département de Biologie cellulaire et Infection, 25-28, rue du docteur Roux, 75724 Paris Cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
- INSERM - Institut National de la Santé et de la Recherche Médicale : U1117 (101, rue de Tolbiac, 75013 Paris - France)
14
UPD5 - Université Paris Descartes - Paris 5 (12, rue de l'École de Médecine - 75270 Paris cedex 06 - France)
15
CHU Necker - Enfants Malades [AP-HP] (149 Rue de Sèvres 75015 Paris - France)
Abstract : Listeria monocytogenes (Lm) is a major human foodborne pathogen. Numerous Lm outbreaks have been reported worldwide and associated with a high case fatality rate, reinforcing the need for strongly coordinated surveillance and outbreak control. We developed a universally applicable genome-wide strain genotyping approach and investigated the population diversity of Lm using 1,696 isolates from diverse sources and geographical locations. We define, with unprecedented precision, the population structure of Lm, demonstrate the occurrence of international circulation of strains and reveal the extent of heterogeneity in virulence and stress resistance genomic features among clinical and food isolates. Using historical isolates, we show that the evolutionary rate of Lm from lineage I and lineage II is low (∼2.5 × 10-7 substitutions per site per year, as inferred from the core genome) and that major sublineages (corresponding to so-called 'epidemic clones') are estimated to be at least 50-150 years old. This work demonstrates the urgent need to monitor Lm strains at the global level and provides the unified approach needed for global harmonization of Lm genome-based typing and population biology.
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Journal articles
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https://hal-pasteur.archives-ouvertes.fr/pasteur-01415883
Contributor : Anne Lassailly-Bondaz <>
Submitted on : Tuesday, December 13, 2016 - 4:51:33 PM
Last modification on : Thursday, June 17, 2021 - 6:36:02 PM
Long-term archiving on: : Tuesday, March 14, 2017 - 2:16:09 PM
Contributor : Anne Lassailly-Bondaz <>
Submitted on : Tuesday, December 13, 2016 - 4:51:33 PM
Last modification on : Thursday, June 17, 2021 - 6:36:02 PM
Long-term archiving on: : Tuesday, March 14, 2017 - 2:16:09 PM
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- HAL Id : pasteur-01415883, version 1
- DOI : 10.1038/nmicrobiol.2016.185
- PUBMED : 27723724
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Citation
Alexandra Moura, Alexis Criscuolo, Hannes Pouseele, Mylène M. Maury, Alexandre Leclercq, et al.. Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nature Microbiology, Nature Publishing Group, 2016, 2, pp.16185. ⟨10.1038/nmicrobiol.2016.185⟩. ⟨pasteur-01415883⟩
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