K. Hampson, L. Coudeville, T. Lembo, M. Sambo, A. Kieffer et al., Estimating 673 the global burden of endemic canine rabies, PLoS Negl Trop Dis, vol.9, issue.4, pp.3709-674, 2015.

S. Basavaraju, M. Kuehnert, S. Zaki, and J. Sejvar, PubMed PMID: 25881058; 675 PubMed Central PMCID: PMC4400070. 676 2 Encephalitis caused by pathogens 677 transmitted through organ transplants, United States, Emerg Infect Dis, vol.67820, issue.3, pp.2002-20131443, 2014.

T. Maier, A. Schwarting, D. Mauer, R. Ross, A. Martens et al., Management and Outcomes after Multiple Corneal and Solid Organ Transplantations from a Donor Infected with Rabies Virus, Clinical Infectious Diseases, vol.50, issue.8, pp.1112-1121, 2010.
DOI : 10.1086/651267

W. Winkler, T. Fashinell, L. Leffingwell, P. Howard, and P. Conomy, Airborne rabies 685 transmission in a laboratory worker Follow-up on rabies -New York, JAMA. Epub MMWR Morb Mortal Wkly Rep, vol.22626, issue.6, pp.1219-21249, 1973.

L. Dacheux, O. Delmas, and H. Bourhy, Human rabies encephalitis prevention and 690 treatment: progress since Pasteur's discovery Infectious disorders drug targets PubMed PMID: 21488832. 692 7. WHO. Expert Consultation on Rabies -Second report. Geneva, Switzerland: World 693 Health Organisation; 2013. 139 p. 694 8. ICTV. Virus taxonomy: classification and nomenclature of viruses: Ninth Report of 695 the International Committee on Taxonomy of Viruses, E.B. and Lefkowitz, E.J, vol.6911115, issue.3, pp.251-99, 2011.
DOI : 10.2174/187152611795768079

J. Juste, Novel lyssavirus in bat, Spain. Emerg Infect Dis, vol.19, issue.5, pp.793-798, 2013.

H. Badrane and N. Tordo, Host Switching in Lyssavirus History from the Chiroptera to the Carnivora Orders, Journal of Virology, vol.75, issue.17, pp.8096-104, 2001.
DOI : 10.1128/JVI.75.17.8096-8104.2001

A. Wacharapluesadee, S. Hemachudha, T. Johnson, N. Freuling, C. Wakeley et al., Ante-and post-mortem diagnosis of rabies 712 using nucleic acid-amplification tests, et 715 al. Emerging technologies for the detection of rabies virus: challenges and hopes in the 716 21st century, pp.207-225, 2009.

L. Dacheux, J. Reynes, P. Buchy, O. Sivuth, B. Diop et al., A reliable 718 diagnosis of human rabies based on analysis of skin biopsy specimens, Clin Infect Dis, vol.719, p.3940

P. Crepin, L. Audry, Y. Rotivel, A. Gacoin, C. Caroff et al., Intravitam diagnosis of 722 human rabies by PCR using saliva and cerebrospinal fluid, J Clin Microbiol, vol.72336, issue.724, pp.1117-1138, 1998.

P. Wakeley, N. Johnson, L. Mcelhinney, D. Marston, J. Sawyer et al., Development of a Real-Time, TaqMan Reverse Transcription-PCR Assay for Detection and Differentiation of Lyssavirus Genotypes 1, 5, and 6, Journal of Clinical Microbiology, vol.43, issue.6, pp.2786-92, 2005.
DOI : 10.1128/JCM.43.6.2786-2792.2005

B. Hoffmann, C. Freuling, P. Wakeley, T. Rasmussen, S. Leech et al., Improved Safety for Molecular Diagnosis of Classical Rabies Viruses by Use of a TaqMan Real-Time Reverse Transcription-PCR "Double Check" Strategy, Journal of Clinical Microbiology, vol.48, issue.11, pp.3970-3978, 2010.
DOI : 10.1128/JCM.00612-10

J. Coertse, J. Weyer, L. Nel, and W. Markotter, Improved PCR methods for detection of 734

M. Fischer, C. Freuling, T. Muller, A. Wegelt, E. Kooi et al., Molecular double-check strategy for the identification and characterization of European Lyssaviruses, Journal of Virological Methods, vol.203, pp.23-32, 2014.
DOI : 10.1016/j.jviromet.2014.03.014

H. Bourhy, J. Cowley, F. Larrous, E. Holmes, and P. Walker, Phylogenetic relationships among rhabdoviruses inferred using the L polymerase gene, Journal of General Virology, vol.86, issue.10, pp.2849-58, 2005.
DOI : 10.1099/vir.0.81128-0

M. Larkin, G. Blackshields, N. Brown, R. Chenna, P. Mcgettigan et al., Clustal W and Clustal X version 2.0, Bioinformatics, vol.23, issue.21, pp.2947-2955, 2007.
DOI : 10.1093/bioinformatics/btm404
URL : https://hal.archives-ouvertes.fr/hal-00206210

M. Sato, N. Maeda, H. Yoshida, M. Urade, and S. Saito, Plaque formation of herpes virus hominis type 2 and rubella virus in variants isolated from the colonies of BHK21/WI-2 cells formed in soft agar, Archives of Virology, vol.131, issue.3, pp.269-73, 1977.
DOI : 10.1007/BF01314672

B. Hoffmann, K. Depner, H. Schirrmeier, and M. Beer, A universal heterologous internal 751 control system for duplex real-time RT-PCR assays used in a detection system for 752 pestiviruses Inter-laboratory test for 755 rabies diagnosis, J Virol Methods. European Union Reference Laboratory for Rabies, vol.136, issue.756, pp.200-209, 2006.

B. Kissi, N. Tordo, and H. Bourhy, Genetic Polymorphism in the Rabies Virus Nucleoprotein Gene, Virology, vol.209, issue.2, pp.526-563, 1995.
DOI : 10.1006/viro.1995.1285

H. Bourhy, J. Reynes, E. Dunham, L. Dacheux, F. Larrous et al., The 761 origin and phylogeography of dog rabies virus Recent 764 emergence and spread of an Arctic-related phylogenetic lineage of rabies virus in Nepal, J Gen Virol. PLoS Negl Trop Dis, vol.897, issue.768, pp.2673-81, 2008.

D. Contou, L. Dacheux, I. Bendib, S. Jolivet, C. Rodriguez et al., Severe 769 ketoalkalosis as initial presentation of imported human rabies in france, J Clin Microbiol, vol.77053, issue.772, pp.1979-82, 2015.

H. Bourhy, P. Rollin, J. Vincent, P. Sureau, and M. Abelseth, Comparative field evaluation of the 778 fluorescent-antibody test, virus isolation from tissue culture, and enzyme 779 immunodiagnosis for rapid laboratory diagnosis of rabies The fluorescent antibody test World Health Organization, Laboratory Techniques in Rabies, pp.519-542, 1989.

D. Hayman, A. Banyard, P. Wakeley, G. Harkess, D. Marston et al., A 785 universal real-time assay for the detection of Lyssaviruses, J Virol Methods. Epub, vol.786177, issue.788, pp.87-93, 2011.

V. Duong, A. Tarantola, S. Ong, C. Mey, R. Choeung et al., Laboratory diagnostics 789 in dog-mediated rabies: an overview of performance and a proposed strategy for 790 various settings, Int J Infect Dis, vol.46, p.27005282, 2016.