Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses, Journal of Virology, vol.80, issue.10, pp.5059-5064, 2006. ,
DOI : 10.1128/JVI.80.10.5059-5064.2006
RIG-I-like receptors: cytoplasmic sensors for non-self RNA, Immunological Reviews, vol.43, issue.1, pp.91-98, 2011. ,
DOI : 10.1111/j.1600-065X.2011.01052.x
Induction of Antiviral Immunity by Double-Stranded RNA in a Marine Invertebrate, Journal of Virology, vol.78, issue.19, pp.10442-10448, 2004. ,
DOI : 10.1128/JVI.78.19.10442-10448.2004
Antiviral Immunity Directed by Small RNAs, Cell, vol.130, issue.3, pp.413-426, 2007. ,
DOI : 10.1016/j.cell.2007.07.039
URL : https://hal.archives-ouvertes.fr/hal-00176625
Small RNAs and the control of transposons and viruses in Drosophila, Trends in Microbiology, vol.17, issue.4, pp.139-178, 2009. ,
DOI : 10.1016/j.tim.2009.01.003
Making RISC, Trends in Biochemical Sciences, vol.35, issue.7, pp.368-376, 2010. ,
DOI : 10.1016/j.tibs.2010.03.009
Origins and Mechanisms of miRNAs and siRNAs, Cell, vol.136, issue.4, pp.642-655, 2009. ,
DOI : 10.1016/j.cell.2009.01.035
Mosquito RNAi is the major innate immune pathway controlling arbovirus infection and transmission, Future Microbiology, vol.6, issue.3, pp.265-277, 2011. ,
DOI : 10.2217/fmb.11.11
RNA interference, arthropod-borne viruses, and mosquitoes, Virus Research, vol.102, issue.1, pp.65-74, 2004. ,
DOI : 10.1016/j.virusres.2004.01.017
Induction and Suppression of RNA Silencing by an Animal Virus, Science, vol.296, issue.5571, pp.1319-1321, 2002. ,
DOI : 10.1126/science.1070948
Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila, Nature Immunology, vol.69, issue.6, pp.590-597, 2006. ,
DOI : 10.1038/ni1335
RNA Interference Directs Innate Immunity Against Viruses in Adult Drosophila, Science, vol.312, issue.5772, pp.452-454, 2006. ,
DOI : 10.1126/science.1125694
The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster, Genes & Development, vol.20, issue.21, pp.2985-2995, 2006. ,
DOI : 10.1101/gad.1482006
RNAi-mediated immunity provides strong protection against the negative-strand RNA vesicular stomatitis virus in Drosophila, Proceedings of the National Academy of Sciences, vol.107, issue.45, pp.19390-19395, 2010. ,
DOI : 10.1073/pnas.1014378107
URL : https://hal.archives-ouvertes.fr/hal-00530555
RNAi Targeting of West Nile Virus in Mosquito Midguts Promotes Virus Diversification, PLoS Pathogens, vol.38, issue.7, p.1000502, 2009. ,
DOI : 10.1371/journal.ppat.1000502.s004
C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference Response, PLoS Neglected Tropical Diseases, vol.36, issue.7, p.856, 2010. ,
DOI : 10.1371/journal.pntd.0000856.t001
Alphavirus-derived small RNAs modulate pathogenesis in disease vector mosquitoes, Proceedings of the National Academy of Sciences, vol.105, issue.50, pp.19938-19943, 2008. ,
DOI : 10.1073/pnas.0803408105
Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs, Proceedings of the National Academy of Sciences, vol.107, issue.4, pp.1606-1611, 2010. ,
DOI : 10.1073/pnas.0911353107
Mechanism of Induction and Suppression of Antiviral Immunity Directed by Virus-Derived Small RNAs in Drosophila, Cell Host & Microbe, vol.4, issue.4, pp.387-397, 2008. ,
DOI : 10.1016/j.chom.2008.09.001
Dicing of viral replication intermediates during silencing of latent Drosophila viruses, Proceedings of the National Academy of Sciences, vol.106, issue.13, pp.5270-5275, 2009. ,
DOI : 10.1073/pnas.0813412106
Comparison of Dengue Virus Type 2-Specific Small RNAs from RNA Interference-Competent and ???Incompetent Mosquito Cells, PLoS Neglected Tropical Diseases, vol.6, issue.10, p.848, 2010. ,
DOI : 10.1371/journal.pntd.0000848.t002
Antiviral RNA Interference Responses Induced by Semliki Forest Virus Infection of Mosquito Cells: Characterization, Origin, and Frequency-Dependent Functions of Virus-Derived Small Interfering RNAs, Journal of Virology, vol.85, issue.6, pp.2907-2917, 2011. ,
DOI : 10.1128/JVI.02052-10
Production of Virus-Derived Ping-Pong-Dependent piRNA-like Small RNAs in the Mosquito Soma, PLoS Pathogens, vol.38, issue.1, p.1002470, 2012. ,
DOI : 10.1371/journal.ppat.1002470.s005
Arbovirus-Derived piRNAs Exhibit a Ping-Pong Signature in Mosquito Cells, PLoS ONE, vol.14, issue.1, p.30861, 2012. ,
DOI : 10.1371/journal.pone.0030861.t001
URL : https://hal.archives-ouvertes.fr/pasteur-01379361
Discovery of DNA Viruses in Wild-Caught Mosquitoes Using Small RNA High throughput Sequencing, PLoS ONE, vol.10, issue.9, p.24758, 2011. ,
DOI : 10.1371/journal.pone.0024758.s001
Antisense RNA: Function and fate of duplex RNA in cells of higher eukaryotes, Microbiol Mol Biol Rev, vol.62, issue.4, pp.1415-1434, 1998. ,
When Two Strands Are Better Than One: The Mediators and Modulators of the Cellular Responses to Double-Stranded RNA, Virology, vol.219, issue.2, pp.339-349, 1996. ,
DOI : 10.1006/viro.1996.0259
The Regulation of Baculovirus Gene Expression, Curr Top Microbiol Immunol, vol.131, pp.31-49, 1986. ,
DOI : 10.1007/978-3-642-71589-1_3
A Decade of Advances in Iridovirus Research, Adv Virus Res, vol.65, pp.173-248, 2005. ,
DOI : 10.1016/S0065-3527(05)65006-3
A comparison of techniques for detecting Invertebrate iridescent virus 6, Journal of Virological Methods, vol.98, issue.2, pp.109-118, 2001. ,
DOI : 10.1016/S0166-0934(01)00356-1
The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster, PLoS Biology, vol.23, issue.12, p.2, 2008. ,
DOI : 10.1371/journal.pbio.1000002.t001
Analysis of the First Complete DNA Sequence of an Invertebrate Iridovirus: Coding Strategy of the Genome of Chilo Iridescent Virus, Virology, vol.286, issue.1, pp.182-196, 2001. ,
DOI : 10.1006/viro.2001.0963
Comparative genomic analysis of the family Iridoviridae: Reannotating and defining the core set of iridovirus genes, Virology Journal, vol.4, issue.1, p.11, 2007. ,
DOI : 10.1186/1743-422X-4-11
Iridoviruses of invertebrates. Encyclopedia of Virology, Mahy BWJ Van Regenmortel MHV, pp.161-167, 2008. ,
Natural Variation of the Amino-Terminal Glutamine-Rich Domain in
Drosophila Argonaute2 Is Not Associated with Developmental
Defects, PLoS ONE, vol.92, issue.12, p.15264, 2010. ,
DOI : 10.1371/journal.pone.0015264.s006
Convergent Evolution of Argonaute-2 Slicer Antagonism in Two Distinct Insect RNA Viruses, PLoS Pathogens, vol.8, issue.8, p.1002872, 2012. ,
DOI : 10.1371/journal.ppat.1002872.s007
Asymmetry in the Assembly of the RNAi Enzyme Complex, Cell, vol.115, issue.2, pp.199-208, 2003. ,
DOI : 10.1016/S0092-8674(03)00759-1
Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila, Genes & Development, vol.19, issue.14, pp.1674-1679, 2005. ,
DOI : 10.1101/gad.1334005
Processing of Pre-microRNAs by the Dicer-1???Loquacious Complex in Drosophila Cells, PLoS Biology, vol.117, issue.7, p.235, 2005. ,
DOI : 10.1371/journal.pbio.0030235.g008
Phosphate and R2D2 Restrict the Substrate Specificity of Dicer-2, an ATP-Driven Ribonuclease, Molecular Cell, vol.42, issue.2, pp.172-184, 2011. ,
DOI : 10.1016/j.molcel.2011.03.002
Distinct Roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA Silencing Pathways, Cell, vol.117, issue.1, pp.69-81, 2004. ,
DOI : 10.1016/S0092-8674(04)00261-2
Strand-specific, real-time RT-PCR assays for quantification of genomic and positive-sense RNAs of the fish rhabdovirus, Infectious hematopoietic necrosis virus, Journal of Virological Methods, vol.132, issue.1-2, pp.18-24, 2006. ,
DOI : 10.1016/j.jviromet.2005.08.017
Accurate Strand-Specific Quantification of Viral RNA, PLoS ONE, vol.320, issue.10, p.7468, 2009. ,
DOI : 10.1371/journal.pone.0007468.t001
Demonstration of in Vitro Infection of Chimpanzee Hepatocytes with Hepatitis C Virus Using Strand-Specific RT/PCR, Virology, vol.202, issue.2, pp.606-614, 1994. ,
DOI : 10.1006/viro.1994.1381
Strand specific quantitative real-time PCR to study replication of hepatitis C virus genome, Journal of Virological Methods, vol.116, issue.1, pp.103-106, 2004. ,
DOI : 10.1016/j.jviromet.2003.10.004
Structural and Functional Analysis of Viral siRNAs, PLoS Pathogens, vol.18, issue.4, p.1000838, 2010. ,
DOI : 10.1371/journal.ppat.1000838.s011
Characterization of an Antisense Transcript Spanning the UL81-82 Locus of Human Cytomegalovirus, Journal of Virology, vol.79, issue.17, pp.11022-11034, 2005. ,
DOI : 10.1128/JVI.79.17.11022-11034.2005
Latency of Epstein-Barr virus is stabilized by antisense-mediated control of the viral immediate-early gene BZLF-1, Journal of Medical Virology, vol.14, issue.4, pp.512-519, 1999. ,
DOI : 10.1002/(SICI)1096-9071(199912)59:4<512::AID-JMV15>3.0.CO;2-B
Antisense Transcription in the Human Cytomegalovirus Transcriptome, Journal of Virology, vol.81, issue.20, pp.11267-11281, 2007. ,
DOI : 10.1128/JVI.00007-07
Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs, RNA, vol.16, issue.8, pp.1540-1558, 2010. ,
DOI : 10.1261/rna.1967910
Overlapping transcripts, double-stranded RNA and antisense regulation: A genomic perspective, Cellular and Molecular Life Sciences, vol.63, issue.18, pp.2102-2118, 2006. ,
DOI : 10.1007/s00018-006-6070-2
The role of RNAi and microRNAs in animal virus replication and antiviral immunity, Genes & Development, vol.23, issue.10, pp.1151-1164, 2009. ,
DOI : 10.1101/gad.1793309
Identification of Virus-Encoded MicroRNAs, Science, vol.304, issue.5671, pp.734-736, 2004. ,
DOI : 10.1126/science.1096781
High-Resolution Profiling and Analysis of Viral and Host Small RNAs during Human Cytomegalovirus Infection, Journal of Virology, vol.86, issue.1, pp.226-235, 2012. ,
DOI : 10.1128/JVI.05903-11
Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing, Nucleic Acids Research, vol.34, issue.21, pp.6233-6246, 2006. ,
DOI : 10.1093/nar/gkl886
Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense, Nucleic Acids Research, vol.39, issue.12, pp.5003-5014, 2011. ,
DOI : 10.1093/nar/gkr119
Molecular characterization of geminivirus-derived small RNAs in different plant species, Nucleic Acids Research, vol.34, issue.2, pp.462-471, 2006. ,
DOI : 10.1093/nar/gkj447
Short Interfering RNA Accumulation Correlates with Host Recovery in DNA Virus-Infected Hosts, and Gene Silencing Targets Specific Viral Sequences, Journal of Virology, vol.78, issue.14, pp.7465-7477, 2004. ,
DOI : 10.1128/JVI.78.14.7465-7477.2004
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP, The EMBO Journal, vol.21, issue.21, pp.5875-5885, 2002. ,
DOI : 10.1093/emboj/cdf582
Single Processing Center Models for Human Dicer and Bacterial RNase III, Cell, vol.118, issue.1, pp.57-68, 2004. ,
DOI : 10.1016/j.cell.2004.06.017
Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines, Proceedings of the National Academy of Sciences, vol.98, issue.25, pp.14428-14433, 2001. ,
DOI : 10.1073/pnas.261562698
Stable suppression of gene expression by RNAi in mammalian cells, Proceedings of the National Academy of Sciences, vol.99, issue.3, pp.1443-1448, 2002. ,
DOI : 10.1073/pnas.032652399
Viruses and microRNAs: RISCy interactions with serious consequences, Genes & Development, vol.25, issue.18, pp.1881-1894, 2011. ,
DOI : 10.1101/gad.17352611
MicroRNAs: Target Recognition and Regulatory Functions, Cell, vol.136, issue.2, pp.215-233, 2009. ,
DOI : 10.1016/j.cell.2009.01.002
Identification of a Novel Marine Fish Virus, Singapore Grouper Iridovirus-Encoded MicroRNAs Expressed in Grouper Cells by Solexa Sequencing, PLoS ONE, vol.36, issue.4, p.19148, 2011. ,
DOI : 10.1371/journal.pone.0019148.s001
Discovering microRNAs from Bombyx mori nucleopolyhedrosis virus, Virology, vol.407, issue.1, pp.120-128, 2010. ,
DOI : 10.1016/j.virol.2010.07.033
An Insect Virus-Encoded MicroRNA Regulates Viral Replication, Journal of Virology, vol.82, issue.18, pp.9164-9170, 2008. ,
DOI : 10.1128/JVI.01109-08
The DExD/H-box helicase Dicer-2 mediates the induction of antiviral activity in drosophila, Nature Immunology, vol.34, issue.12, pp.1425-1432, 2008. ,
DOI : 10.1038/ni.1664
Proteomic analysis of Chilo iridescent virus, Virology, vol.405, issue.1, pp.253-258, 2010. ,
DOI : 10.1016/j.virol.2010.05.038
Sublethal effects of iridovirus disease in a mosquito, Oecologia, vol.119, issue.3, pp.383-388, 1999. ,
DOI : 10.1007/s004420050799
Induction of host defence responses by Drosophila C virus, Journal of General Virology, vol.89, issue.6, pp.1497-1501, 2008. ,
DOI : 10.1099/vir.0.83684-0
A simple method of estimating fifty percent endpoints, Am J Hyg, vol.27, issue.3, pp.493-497, 1938. ,
Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways, Genes & Development, vol.18, issue.14, pp.1655-1666, 2004. ,
DOI : 10.1101/gad.1210204
Entry is a rate-limiting step for viral infection in a Drosophila melanogaster model of pathogenesis, Nature Immunology, vol.5, issue.1, pp.81-87, 2004. ,
DOI : 10.1038/ni1019
Viral Small RNA Cloning and Sequencing, Methods Mol Biol, vol.721, pp.107-122, 2011. ,
DOI : 10.1007/978-1-61779-037-9_6
In Silico Reconstruction of Viral Genomes from Small RNAs Improves Virus-Derived Small Interfering RNA Profiling, Journal of Virology, vol.85, issue.21, pp.11016-11021, 2011. ,
DOI : 10.1128/JVI.05647-11
URL : https://hal.archives-ouvertes.fr/pasteur-01379334
Identification of Viral Suppressors of RNAi by a Reporter Assay in Drosophila S2 Cell Culture, Methods Mol Biol, vol.721, pp.201-213, 2011. ,
DOI : 10.1007/978-1-61779-037-9_12