Extending the Upper Temperature Limit for Life, Science, vol.301, issue.5635, p.934, 2003. ,
DOI : 10.1126/science.1086823
Picrophilus gen. nov., fam. nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0., Journal of Bacteriology, vol.177, issue.24, pp.7050-7059, 1995. ,
DOI : 10.1128/jb.177.24.7050-7059.1995
Posttranslational Protein Modification in Archaea, Microbiology and Molecular Biology Reviews, vol.69, issue.3, pp.393-425, 2005. ,
DOI : 10.1128/MMBR.69.3.393-425.2005
and other haloarchaea, FEMS Microbiology Reviews, vol.37, issue.4, pp.583-606, 2013. ,
DOI : 10.1111/1574-6976.12012
N-Linked Glycosylation in Archaea: a Structural, Functional, and Genetic Analysis, Microbiology and Molecular Biology Reviews, vol.78, issue.2, pp.304-345, 2014. ,
DOI : 10.1128/MMBR.00052-13
Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii, Nature, vol.20, issue.7277, pp.54-60, 2010. ,
DOI : 10.1038/nature08659
Glycosylation Profile, Journal of Proteome Research, vol.12, issue.6, pp.2779-2790, 2013. ,
DOI : 10.1021/pr400123z
The Interaction of Alba, a Conserved Archaeal Chromatin Protein, with Sir2 and Its Regulation by Acetylation, Science, vol.296, issue.5565, pp.148-151, 2002. ,
DOI : 10.1126/science.1070506
The amino acid sequence of glutamate dehydrogenase fromPyrococcus furiosus, a hyperthermophilic archaebacterium, Journal of Protein Chemistry, vol.214, issue.2, pp.253-259, 1994. ,
DOI : 10.1007/BF01891983
Extensive lysine methylation in hyperthermophilic crenarchaea: potential implications for protein stability and recombinant enzymes Thermal stability and aggregation of sulfolobus solfataricus beta-glycosidase are dependent upon the N-epsilon-methylation of specific lysyl residues: critical role of in vivo post-translational modifications, Archaea J. Biol. Chem, vol.12, issue.279, pp.10185-94, 2004. ,
The helicase activity of hyperthermophilic archaeal MCM is enhanced at high temperatures by lysine methylation Solution structure and DNA-binding properties of a thermostable protein from the archaeon Sulfolobus solfataricus, Front. Microbiol. Nat Struct Mol Biol, vol.6, issue.1, pp.808-819, 1994. ,
Top-Down Proteomics Proteoform: a single term describing protein complexity, Anal. Chem. Nat Meth, vol.76, issue.10, pp.196-203, 2004. ,
pilins requires top-down mass spectrometry, PROTEOMICS, vol.18, issue.10, pp.1141-1151, 2014. ,
DOI : 10.1002/pmic.201300394
<italic>Neisseria meningitidis</italic> Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation Mapping intact protein isoforms in discovery mode using top-down proteomics, PLoS Pathog Nature, vol.11, issue.480, pp.254-258, 2011. ,
Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions, Proc. Natl. Acad. Sci, pp.10153-10158, 2013. ,
DOI : 10.1073/pnas.1221210110
Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry, PROTEOMICS, vol.252, issue.Suppl 5, pp.1211-1222, 2014. ,
DOI : 10.1002/pmic.201300378
Applying Label-Free Quantitation to Top Down Proteomics, Analytical Chemistry, vol.86, issue.10, pp.4961-4968, 2014. ,
DOI : 10.1021/ac500395k
The top-down, middle-down, and bottom-up mass spectrometry approaches for characterization of histone variants and their post-translational modifications, PROTEOMICS, vol.11, issue.4-5, pp.489-497, 2014. ,
DOI : 10.1002/pmic.201300256
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon, Open Biology, vol.41, issue.1, pp.1568-1573, 2008. ,
DOI : 10.1016/j.coi.2011.10.005
URL : https://hal.archives-ouvertes.fr/hal-00818894
Top-Down and Bottom-Up Proteomics of SDS-Containing Solutions Following Mass-Based Separation, Journal of Proteome Research, vol.9, issue.6, pp.2863-2870, 2010. ,
DOI : 10.1021/pr900949p
In-gel digestion for mass spectrometric characterization of proteins and proteomes, Nature Protocols, vol.5, issue.6, pp.2856-60, 2006. ,
DOI : 10.1038/nprot.2006.468
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification, Nature Biotechnology, vol.7, issue.12, pp.1367-1372, 2008. ,
DOI : 10.1038/nprot.2007.261
Pyteomics???a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics, Journal of The American Society for Mass Spectrometry, vol.35, issue.2, pp.301-304, 2013. ,
DOI : 10.1007/s13361-012-0516-6
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ, Molecular & Cellular Proteomics, vol.13, issue.9, pp.2513-2526, 2014. ,
DOI : 10.1074/mcp.M113.031591
Large-scale Top-down Proteomics of the Human Proteome: Membrane Proteins, Mitochondria, and Senescence, 2013) Large-scale Top-down Proteomics of the Human Proteome: Membrane Proteins, Mitochondria, and Senescence, pp.3465-3473 ,
DOI : 10.1074/mcp.M113.030114
MS-Viewer: A Web-based Spectral Viewer for Proteomics Results, Molecular & Cellular Proteomics, vol.13, issue.5, pp.1392-1396, 2014. ,
DOI : 10.1074/mcp.O113.037200
Purine biosynthesis in archaea: variations on a theme, Biology Direct, vol.6, issue.1, p.63, 2011. ,
DOI : 10.1101/gr.849004
Function and stationary-phase induction of periplasmic copper-zinc superoxide dismutase and catalase/peroxidase in Caulobacter crescentus., Journal of Bacteriology, vol.177, issue.20, pp.5924-5929, 1995. ,
DOI : 10.1128/jb.177.20.5924-5929.1995
Dps Protects Cells against Multiple Stresses during Stationary Phase, Journal of Bacteriology, vol.186, issue.13, pp.4192-4198, 2004. ,
DOI : 10.1128/JB.186.13.4192-4198.2004
Nucleoid structure and distribution in thermophilic Archaea., Journal of Bacteriology, vol.179, issue.24, pp.7625-7630, 1997. ,
DOI : 10.1128/jb.179.24.7625-7630.1997
Changes in Cell Size and DNA Content inSulfolobus Cultures during Dilution and Temperature Shift Experiments, J. Bacteriol, vol.181, pp.5669-5675, 1999. ,
The growing landscape of lysine acetylation links metabolism and cell signalling, Nature Reviews Molecular Cell Biology, vol.13, issue.8, pp.536-550, 2014. ,
DOI : 10.1038/nrm3841
Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow, 2015) Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow, pp.2429-2440 ,
DOI : 10.1074/mcp.O114.047555
Protein lysine acetylation analysis: current MS-based proteomic technologies, The Analyst, vol.8, issue.6, pp.1628-1636, 2013. ,
DOI : 10.1039/c3an36837h
Protein acetylation in archaea, bacteria, and eukaryotes An acetylase with relaxed specificity catalyses protein N-terminal acetylation in Sulfolobus solfataricus, Archaea Mol. Microbiol, vol.42, issue.64, pp.1540-1548, 2007. ,
Thermostable NAD+-dependent alcohol dehydrogenase from Sulfolobus solfataricus: gene and protein sequence determination and relationship to other alcohol dehydrogenases, Biochemistry, vol.31, issue.49, pp.12514-12523, 1992. ,
DOI : 10.1021/bi00164a031
The protein sequence of glutamate dehydrogenase from Sulfolobus solfataricus, a thermoacidophilic archaebacterium. Is the presence of N-epsilon-methyllysine related to thermostability?, European Journal of Biochemistry, vol.186, issue.1-2, pp.81-87, 1992. ,
DOI : 10.1038/333784a0
Lysine Methylation Mapping of Crenarchaeal DNA-Directed RNA Polymerases by Collision-Induced and Electron-Transfer Dissociation Mass Spectrometry, Journal of Proteome Research, vol.13, issue.5, pp.2637-2648, 2014. ,
DOI : 10.1021/pr500084p
Identification of Methylation Sites and Effects of Phototaxis Stimuli on Transducer Methylation in Halobacterium salinarum, J. Bacteriol, vol.181, pp.5676-5683, 1999. ,
Physiological Sites of Deamidation and Methyl Esterification in Sensory Transducers of Halobacterium salinarum, Journal of Molecular Biology, vol.380, issue.2, pp.285-302, 2008. ,
DOI : 10.1016/j.jmb.2008.04.063
The quantitative and condition-dependent Escherichia coli proteome, Nature Biotechnology, vol.67, issue.1, pp.104-110, 2016. ,
DOI : 10.1002/pmic.201000665
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea, Biology Direct, vol.2, issue.1, p.33, 2007. ,
DOI : 10.1186/1745-6150-2-33
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales, Life, vol.5, issue.1, pp.818-840, 2015. ,
DOI : 10.3390/life5010818
A Prototypic Lysine Methyltransferase 4 from Archaea with Degenerate Sequence Specificity Methylates Chromatin Proteins Sul7d and Cren7 in Different Patterns, Journal of Biological Chemistry, vol.288, issue.19, pp.13728-13768, 2013. ,
DOI : 10.1074/jbc.M113.452979
Targeted analysis and discovery of posttranslational modifications in proteins from methanogenic archaea by top-down MS, Proceedings of the National Academy of Sciences, vol.101, issue.9, pp.2678-2683, 2004. ,
DOI : 10.1073/pnas.0306575101
Top-down proteomics reveals novel protein forms expressed in methanosarcina acetivorans, Journal of the American Society for Mass Spectrometry, vol.18, issue.9, pp.1743-1750, 2009. ,
DOI : 10.1016/j.jasms.2009.05.014
The path of no return-Truncated protein N-termini and current ignorance of their genesis, PROTEOMICS, vol.11, issue.14, pp.2547-2552, 2015. ,
DOI : 10.1002/pmic.201500043
Quantitative mass spectrometry in proteomics: a critical review, Analytical and Bioanalytical Chemistry, vol.25, issue.7, pp.1017-1031, 2007. ,
DOI : 10.1007/s00216-007-1486-6
The One Hour Yeast Proteome, Molecular & Cellular Proteomics, vol.13, issue.1, p.59, 2013. ,
DOI : 10.1074/mcp.M113.034769
Obligate Heterodimerization of the Archaeal Alba2 Protein with Alba1 Provides a Mechanism for Control of DNA Packaging, Structure, vol.13, issue.7, pp.963-71, 2005. ,
DOI : 10.1016/j.str.2005.04.016
Alba shapes the archaeal genome using a delicate balance of bridging and stiffening the DNA, Nature Communications, vol.86, p.1328, 2012. ,
DOI : 10.1038/ncomms2330
Structure and dynamics of the crenarchaeal nucleoid: Figure 1, Biochemical Society Transactions, vol.179, issue.1, pp.321-325, 2013. ,
DOI : 10.1128/MMBR.69.3.393-425.2005
Identification and Characterization of a Highly Conserved Crenarchaeal Protein Lysine Methyltransferase with Broad Substrate Specificity, Journal of Bacteriology, vol.194, issue.24, pp.6917-6943, 2012. ,
DOI : 10.1128/JB.01535-12
Structure of a Sir2 Substrate, Alba, Reveals a Mechanism for Deacetylation-induced Enhancement of DNA Binding, Journal of Biological Chemistry, vol.278, issue.28, pp.26071-26077, 2003. ,
DOI : 10.1074/jbc.M303666200
Archaeal chromatin proteins: different structures but common function?, Current Opinion in Microbiology, vol.8, issue.6, pp.656-61, 2005. ,
DOI : 10.1016/j.mib.2005.10.007
The interplay between nucleoid organization and transcription in archaeal genomes, Nature Reviews Microbiology, vol.215, issue.6, pp.333-341, 2015. ,
DOI : 10.1038/nrmicro3467
Structural Basis for Substrate-specific Acetylation of N?acetyltransferase Ard1 from Sulfolobus solfataricus, Sci. Rep, vol.5, 2015. ,