Protein secretion and the pathogenesis of bacterial infections, Genes & Development, vol.15, issue.14, pp.1725-1752, 2001. ,
DOI : 10.1101/gad.896801
Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence, Current Biology, vol.19, issue.20, pp.1683-1691, 2009. ,
DOI : 10.1016/j.cub.2009.08.056
Type III protein secretion systems in bacterial pathogens of animals and plants, Microbiol Mol Biol Rev, vol.62, pp.379-433, 1998. ,
Process of Protein Transport by the Type III Secretion System, Microbiology and Molecular Biology Reviews, vol.68, issue.4, pp.771-795, 2004. ,
DOI : 10.1128/MMBR.68.4.771-795.2004
Protein delivery into eukaryotic cells by type III secretion machines, Nature, vol.281, issue.7119, pp.567-573, 2006. ,
DOI : 10.1038/nature05272
The type III secretion injectisome, Nature Reviews Microbiology, vol.103, issue.11, pp.811-825, 2006. ,
DOI : 10.1038/nrmicro1526
Evolution of the type III secretion system and its effectors in plant-microbe interactions, New Phytologist, vol.428, issue.1, pp.33-47, 2008. ,
DOI : 10.1111/j.1469-8137.2007.02293.x
The blueprint of the type-3 injectisome, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.451, issue.7177, pp.1140-1154, 2012. ,
DOI : 10.1038/nature06449
A second type III secretion system in Burkholderia pseudomallei: who is the real culprit?, Microbiology, vol.147, issue.12, pp.3197-3199, 2001. ,
DOI : 10.1099/00221287-147-12-3197
Distribution of type III secretion gene clusters in Burkholderia pseudomallei, B. thailandensis and B. mallei, Journal of Medical Microbiology, vol.51, issue.5, pp.374-384, 2002. ,
DOI : 10.1099/0022-1317-51-5-374
Unraveling type III secretion systems in the highly versatile Burkholderia pseudomallei, Trends in Microbiology, vol.18, issue.12, pp.561-568, 2010. ,
DOI : 10.1016/j.tim.2010.09.002
Salmonella pathogenicity islands encoding type III secretion systems, Microbes and Infection, vol.3, issue.7, pp.549-559, 2001. ,
DOI : 10.1016/S1286-4579(01)01411-3
Broadly Protective Shigella Vaccine Based on Type III Secretion Apparatus Proteins, Infection and Immunity, vol.80, issue.3, pp.1222-1231, 2011. ,
DOI : 10.1128/IAI.06174-11
The Type III Secretion System as a Source of Novel Antibacterial Drug Targets, Current Drug Targets, vol.13, issue.3, pp.338-351, 2011. ,
DOI : 10.2174/138945012799424642
Delivery of epitopes by the Salmonella type III secretion system for vaccine development, Science, vol.281, pp.565-568, 1998. ,
First multi-epitope subunit vaccine against extraintestinal pathogenic Escherichia coli delivered by a bacterial type-3 secretion system (T3SS), International Journal of Medical Microbiology, vol.302, issue.1, pp.10-18, 2012. ,
DOI : 10.1016/j.ijmm.2011.09.012
Type III secretion systems and the evolution of mutualistic endosymbiosis, Proceedings of the National Academy of Sciences, vol.99, issue.19, pp.12397-12402, 2002. ,
DOI : 10.1073/pnas.182213299
Molecular basis of symbiosis between Rhizobium and legumes, Nature, vol.387, issue.6631, pp.394-401, 1997. ,
DOI : 10.1038/387394a0
Endofungal bacterium controls its host by an hrp type III secretion system, The ISME Journal, vol.11, issue.2, pp.252-261, 2011. ,
DOI : 10.1038/ismej.2010.126
Illuminating the Evolutionary History of Chlamydiae, Science, vol.304, issue.5671, pp.728-730, 2004. ,
DOI : 10.1126/science.1096330
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue, Trends in Microbiology, vol.17, issue.4, pp.139-145, 2009. ,
DOI : 10.1016/j.tim.2009.01.004
Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica., Journal of Bacteriology, vol.173, issue.16, pp.4994-5009, 1991. ,
DOI : 10.1128/jb.173.16.4994-5009.1991
The Pseudomonas syringae pv. syringae 61 hrpH product, an envelope protein required for elicitation of the hypersensitive response in plants., Journal of Bacteriology, vol.174, issue.21, pp.6878-6885, 1992. ,
DOI : 10.1128/jb.174.21.6878-6885.1992
Altered localization of HrpZ in Pseudomonas syringae pv. syringae hrp mutants suggests that different components of the type III secretion pathway control protein translocation across the inner and outer membranes of gram-negative bacteria., Journal of Bacteriology, vol.179, issue.12, pp.3866-3874, 1997. ,
DOI : 10.1128/jb.179.12.3866-3874.1997
Secretins: dynamic channels for protein transport across membranes, Trends in Biochemical Sciences, vol.36, issue.8, pp.433-443, 2011. ,
DOI : 10.1016/j.tibs.2011.04.002
Molecular characterization and assembly of the needle complex of the Salmonella typhimurium type III protein secretion system, Proceedings of the National Academy of Sciences, vol.97, issue.18, pp.10225-10230, 2000. ,
DOI : 10.1073/pnas.170128997
Supramolecular Structure of the Salmonella typhimurium Type III Protein Secretion System, Science, vol.280, issue.5363, pp.602-605, 1998. ,
DOI : 10.1126/science.280.5363.602
Polymerization of a single protein of the pathogen Yersinia enterocolitica into needles punctures eukaryotic cells, Proceedings of the National Academy of Sciences, vol.98, issue.8, pp.4669-4674, 2001. ,
DOI : 10.1073/pnas.071065798
Contribution of Salmonella typhimurium type III secretion components to needle complex formation, Proceedings of the National Academy of Sciences, vol.97, issue.20, pp.11008-11013, 2000. ,
DOI : 10.1073/pnas.200209497
DC3000 reassembles into pili, FEBS Letters, vol.50, issue.2, pp.168-172, 1997. ,
DOI : 10.1016/S0014-5793(97)01276-3
Ralstonia solanacearum produces Hrp-dependent pili that are required for PopA secretion but not for attachment of bacteria to plant cells, Molecular Microbiology, vol.36, issue.2, pp.249-260, 2000. ,
DOI : 10.1016/S0966-842X(97)01124-4
The Hrp pilus: learning from flagella, Current Opinion in Microbiology, vol.6, issue.1, pp.15-19, 2003. ,
DOI : 10.1016/S1369-5274(02)00007-3
The secretion of the Shigella flexneri Ipa invasins is activated by epithelial cells and controlled by IpaB and IpaD, EMBO J, vol.13, pp.5293-5302, 1994. ,
IpaD of Shigella flexneri Is Independently Required for Regulation of Ipa Protein Secretion and Efficient Insertion of IpaB and IpaC into Host Membranes, Infection and Immunity, vol.73, issue.3, pp.1432-1440, 2005. ,
DOI : 10.1128/IAI.73.3.1432-1440.2005
The YopB protein of Yersinia pseudotuberculosis is essential for the translocation of Yop effector proteins across the target cell plasma membrane and displays a contact-dependent membrane disrupting activity, EMBO J, vol.15, pp.5812-5823, 1996. ,
Salmonella typhimurium mutants defective in flagellar filament regrowth and sequence similarity of FliI to F0F1, vacuolar, and archaebacterial ATPase subunits., Journal of Bacteriology, vol.173, issue.11, pp.3564-3572, 1991. ,
DOI : 10.1128/jb.173.11.3564-3572.1991
Genetic and biochemical analysis of Salmonella typhimurium FliI, a flagellar protein related to the catalytic subunit of the F0F1 ATPase and to virulence proteins of mammalian and plant pathogens., Journal of Bacteriology, vol.175, issue.10, pp.3131-3138, 1993. ,
DOI : 10.1128/jb.175.10.3131-3138.1993
Evolutionary links between FliH/YscL-like proteins from bacterial type III secretion systems and second-stalk components of the FoF1 and vacuolar ATPases, Protein Science, vol.15, issue.4, pp.935-941, 2006. ,
DOI : 10.1110/ps.051958806
Inventing the dynamo machine: the evolution of the F-type and V-type ATPases, Nature Reviews Microbiology, vol.32, issue.11, pp.892-899, 2007. ,
DOI : 10.1038/nrmicro1767
Surface presentation of Shigella flexneri invasion plasmid antigens requires the products of the spa locus., Journal of Bacteriology, vol.174, issue.6, pp.1990-2001, 1992. ,
DOI : 10.1128/jb.174.6.1990-2001.1992
YscN, the putative energizer of the Yersinia Yop secretion machinery., Journal of Bacteriology, vol.176, issue.6, pp.1561-1569, 1994. ,
DOI : 10.1128/jb.176.6.1561-1569.1994
Molecular and functional characterization of the Salmonella typhimurium invasion genes invB and invC: homology of InvC to the F0F1 ATPase family of proteins., Journal of Bacteriology, vol.176, issue.15, pp.4501-4510, 1994. ,
DOI : 10.1128/jb.176.15.4501-4510.1994
Energizing type III secretion machines: what is the fuel?, Nature Structural & Molecular Biology, vol.271, issue.2, pp.127-128, 2008. ,
DOI : 10.1016/j.tibs.2006.10.006
A Sorting Platform Determines the Order of Protein Secretion in Bacterial Type III Systems, Science, vol.331, issue.6021, pp.1188-1191, 2011. ,
DOI : 10.1126/science.1201476
YscP and YscU Regulate Substrate Specificity of the Yersinia Type III Secretion System, Journal of Bacteriology, vol.185, issue.7, pp.2259-2266, 2003. ,
DOI : 10.1128/JB.185.7.2259-2266.2003
Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS, Nature, vol.17, issue.7191, pp.124-127, 2008. ,
DOI : 10.1038/nature06832
Shigella Spa32 Is an Essential Secretory Protein for Functional Type III Secretion Machinery and Uniformity of Its Needle Length, Journal of Bacteriology, vol.184, issue.5, pp.1244-1252, 2002. ,
DOI : 10.1128/JB.184.5.1244-1252.2002
The Needle Length of Bacterial Injectisomes Is Determined by a Molecular Ruler, Science, vol.302, issue.5651, pp.1757-1760, 2003. ,
DOI : 10.1126/science.1091422
URL : https://hal.archives-ouvertes.fr/hal-00177660
YscP and YscU Switch the Substrate Specificity of the Yersinia Type III Secretion System by Regulating Export of the Inner Rod Protein YscI, Journal of Bacteriology, vol.190, issue.12, pp.4252-4262, 2008. ,
DOI : 10.1128/JB.00328-08
Deciphering the assembly of the Yersinia type III secretion injectisome, The EMBO Journal, vol.14, issue.11, pp.1928-1940, 2010. ,
DOI : 10.1038/emboj.2010.84
The assembly of the export apparatus (YscR,S,T,U,V) of the Yersinia type III secretion apparatus occurs independently of other structural components and involves the formation of an YscV oligomer, Molecular Microbiology, vol.41, issue.2, pp.502-514, 2011. ,
DOI : 10.1111/j.1365-2958.2011.07830.x
Organization and coordinated assembly of the type III secretion export apparatus, Proceedings of the National Academy of Sciences, vol.107, issue.41, pp.17745-17750, 2010. ,
DOI : 10.1073/pnas.1008053107
Genetic Analysis of Assembly of the Salmonella enterica Serovar Typhimurium Type III Secretion-Associated Needle Complex, Journal of Bacteriology, vol.183, issue.4, pp.1159-1167, 2001. ,
DOI : 10.1128/JB.183.4.1159-1167.2001
Timing is everything: the regulation of type III secretion, Cellular and Molecular Life Sciences, vol.71, issue.7, pp.1065-1075, 2010. ,
DOI : 10.1007/s00018-009-0230-0
Type III secretion systems and bacterial flagella: Insights into their function from structural similarities, Proceedings of the National Academy of Sciences, vol.100, issue.6, pp.3027-3030, 2003. ,
DOI : 10.1073/pnas.0535335100
Flipping the switch: bringing order to flagellar assembly, Trends in Microbiology, vol.14, issue.12, pp.519-526, 2006. ,
DOI : 10.1016/j.tim.2006.10.006
Self-Assembly and Type III Protein Export of the Bacterial Flagellum, Journal of Molecular Microbiology and Biotechnology, vol.7, issue.1-2, pp.5-17, 2004. ,
DOI : 10.1159/000077865
Bacterial Injectisomes: Needle Length Does Matter, Science, vol.307, issue.5713, p.1278, 2005. ,
DOI : 10.1126/science.1107679
URL : https://hal.archives-ouvertes.fr/hal-00177651
The Needle Component of the Type III Secreton of Shigella Regulates the Activity of the Secretion Apparatus, Journal of Biological Chemistry, vol.280, issue.52, pp.42929-42937, 2005. ,
DOI : 10.1074/jbc.M508377200
Type III Secretion in Yersinia: Injectisome or Not?, PLoS Pathogens, vol.108, issue.5, 2012. ,
DOI : 10.1371/journal.ppat.1002669.g001
Bioinformatics, genomics and evolution of non-flagellar type-III secretion systems: a Darwinian perpective, FEMS Microbiology Reviews, vol.29, issue.2, pp.201-229, 2005. ,
DOI : 10.1016/j.femsre.2005.01.001
Type III Secretion: More Systems Than You Think, Physiology, vol.20, issue.5, pp.326-339, 2005. ,
DOI : 10.1152/physiol.00011.2005
Inserts Ipab and Ipac into Host Membranes, The Journal of Cell Biology, vol.11, issue.3, pp.683-693, 1999. ,
DOI : 10.1038/354408a0
Identification of a virulence locus encoding a second type III secretion system in Salmonella typhimurium., Proceedings of the National Academy of Sciences, vol.93, issue.6, pp.2593-2597, 1996. ,
DOI : 10.1073/pnas.93.6.2593
Identification of a pathogenicity island required for Salmonella survival in host cells., Proceedings of the National Academy of Sciences, vol.93, issue.15, pp.7800-7804, 1996. ,
DOI : 10.1073/pnas.93.15.7800
The Yersinia Yop virulon: a bacterial system for subverting eukaryotic cells, Molecular Microbiology, vol.23, issue.5, pp.861-867, 1997. ,
DOI : 10.1046/j.1365-2958.1997.2731623.x
Type III secretion ?? la Chlamydia, Trends in Microbiology, vol.15, issue.6, pp.241-251, 2007. ,
DOI : 10.1016/j.tim.2007.04.005
Genetic and transcriptional organization of the hrp cluster of Pseudomonas syringae pv. phaseolicola., Journal of Bacteriology, vol.173, issue.2, pp.575-586, 1991. ,
DOI : 10.1128/jb.173.2.575-586.1991
The hrp gene locus of Pseudomonas solanacearum, which controls the production of a type III secretion system, encodes eight proteins related to components of the bacterial flagellar biogenesis complex, Molecular Microbiology, vol.65, issue.6, pp.1095-1114, 1995. ,
DOI : 10.1016/0378-1119(91)90220-6
Contact with epithelial cells induces the formation of surface appendages on Salmonella typhimurium, Cell, vol.76, issue.4, pp.717-724, 1994. ,
DOI : 10.1016/0092-8674(94)90510-X
From The Origin of Species to the origin of bacterial flagella, Nature Reviews Microbiology, vol.176, issue.10, pp.784-790, 2006. ,
DOI : 10.1038/nrmicro1493
Physiological and biochemical analyses of FlgH, a lipoprotein forming the outer membrane L ring of the flagellar basal body of Salmonella typhimurium., Journal of Bacteriology, vol.178, issue.14, pp.4200-4207, 1996. ,
DOI : 10.1128/jb.178.14.4200-4207.1996
Stepwise formation of the bacterial flagellar system, Proceedings of the National Academy of Sciences, vol.104, issue.17, pp.7116-7121, 2007. ,
DOI : 10.1073/pnas.0700266104
Bacterial flagellar diversity and evolution: seek simplicity and distrust it?, Trends in Microbiology, vol.17, issue.1, pp.1-5, 2009. ,
DOI : 10.1016/j.tim.2008.10.002
Bacterial type III secretion systems are ancient and evolved by multiple horizontal-transfer events, Gene, vol.312, pp.151-163, 2003. ,
DOI : 10.1016/S0378-1119(03)00612-7
Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems, PLoS Computational Biology, vol.340, issue.12, 2006. ,
DOI : 10.1371/journal.pcbi.0020173.st005
Phylogenetic evidence for extensive horizontal gene transfer of type III secretion system genes among enterobacterial plant pathogens, Microbiology, vol.155, issue.10, pp.3187-3199, 2009. ,
DOI : 10.1099/mic.0.029892-0
Unity in Variety--The Pan-Genome of the Chlamydiae, Molecular Biology and Evolution, vol.28, issue.12, pp.3253-3270, 2011. ,
DOI : 10.1093/molbev/msr161
Phylogenetic analyses of the constituents of Type III protein secretion systems, J Mol Microbiol Biotechnol, vol.2, pp.125-144, 2000. ,
Origins of Flagellar Gene Operons and Secondary Flagellar Systems, Journal of Bacteriology, vol.189, issue.19, pp.7098-7104, 2007. ,
DOI : 10.1128/JB.00643-07
Revisiting the chlamydial type III protein secretion system: clues to the origin of type III protein secretion, Trends in Genetics, vol.17, issue.2, pp.65-69, 2001. ,
DOI : 10.1016/S0168-9525(00)02175-2
Characterization of the ysa Pathogenicity Locus in the Chromosome of Yersinia enterocolitica and Phylogeny Analysis of Type III Secretion Systems, Journal of Molecular Evolution, vol.55, issue.1, pp.37-51, 2002. ,
DOI : 10.1007/s00239-001-0089-7
Exaptation???a Missing Term in the Science of Form, Paleobiology, vol.76, issue.01, pp.4-15, 1982. ,
DOI : 10.2307/2412538
Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria, PLoS Genetics, vol.17, issue.9, 2011. ,
DOI : 10.1371/journal.pgen.1002268.s017
URL : https://hal.archives-ouvertes.fr/hal-00698033
Evolution of increased complexity in a molecular machine, Nature, vol.32, pp.360-143, 2012. ,
DOI : 10.1038/nature10724
Accelerated Profile HMM Searches, PLoS Computational Biology, vol.21, issue.10, 2011. ,
DOI : 10.1371/journal.pcbi.1002195.g006
The ETT2 Gene Cluster, Encoding a Second Type III Secretion System from Escherichia coli, Is Present in the Majority of Strains but Has Undergone Widespread Mutational Attrition, Journal of Bacteriology, vol.186, issue.11, pp.3547-3560, 2004. ,
DOI : 10.1128/JB.186.11.3547-3560.2004
Regulators Encoded in the Escherichia coli Type III Secretion System 2 Gene Cluster Influence Expression of Genes within the Locus for Enterocyte Effacement in Enterohemorrhagic E. coli O157:H7, Infection and Immunity, vol.72, issue.12, pp.7282-7293, 2004. ,
DOI : 10.1128/IAI.72.12.7282-7293.2004
A Degenerate Type III Secretion System from Septicemic Escherichia coli Contributes to Pathogenesis, Journal of Bacteriology, vol.187, issue.23, pp.8164-8171, 2005. ,
DOI : 10.1128/JB.187.23.8164-8171.2005
Bioinformatic and Biochemical Evidence for the Identification of the Type III Secretion System Needle Protein of Chlamydia trachomatis, Journal of Bacteriology, vol.190, issue.5, pp.1680-1690, 2008. ,
DOI : 10.1128/JB.01671-07
Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors, Proceedings of the National Academy of Sciences, vol.106, issue.22, pp.9063-9068, 2009. ,
DOI : 10.1073/pnas.0900194106
The Chlamydial Type III Secretion Mechanism: Revealing Cracks in a Tough Nut, Frontiers in Microbiology, vol.1, p.114, 2010. ,
DOI : 10.3389/fmicb.2010.00114
Evolution of bacterial type III protein secretion systems, Trends in Microbiology, vol.12, issue.3, pp.113-115, 2004. ,
DOI : 10.1016/j.tim.2004.01.003
Bacterial Flagella and Type III Secretion: Case Studies in the Evolution of Complexity, Genome Dyn, vol.3, pp.30-47, 2007. ,
DOI : 10.1159/000107602
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments, BMC Evolutionary Biology, vol.10, issue.1, p.210, 2010. ,
DOI : 10.1186/1471-2148-10-210
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, vol.22, issue.21, pp.2688-2690, 2006. ,
DOI : 10.1093/bioinformatics/btl446
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests, BMC Bioinformatics, vol.11, issue.1, p.324, 2010. ,
DOI : 10.1186/1471-2105-11-324
URL : https://hal.archives-ouvertes.fr/inria-00527151
Expanded phylogeny of myxobacteria and evidence for cultivation of the ???unculturables???, Molecular Phylogenetics and Evolution, vol.57, issue.2, pp.878-887, 2010. ,
DOI : 10.1016/j.ympev.2010.08.028
SeqinR 1.0?2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis Structural approaches to sequence evolution: Molecules, networks, populations, pp.207-232, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00434576
An analysis of type-III secretion gene clusters in Chromobacterium violaceum, Trends in Microbiology, vol.12, issue.11, pp.476-482, 2004. ,
DOI : 10.1016/j.tim.2004.09.010
Outer Membrane Components of the Tad (Tight Adherence) Secreton of Aggregatibacter actinomycetemcomitans, Journal of Bacteriology, vol.190, issue.3, pp.980-990, 2008. ,
DOI : 10.1128/JB.01347-07
The tad locus: postcards from the widespread colonization island, Nature Reviews Microbiology, vol.24, issue.5, pp.363-375, 2007. ,
DOI : 10.1038/nrmicro1636
Rhizobium type III secretion systems: legume charmers or alarmers?, Current Opinion in Plant Biology, vol.4, issue.4, pp.336-342, 2001. ,
DOI : 10.1016/S1369-5266(00)00182-5
The BON domain: a putative membrane-binding domain, Trends in Biochemical Sciences, vol.28, issue.7, pp.352-355, 2003. ,
DOI : 10.1016/S0968-0004(03)00115-4
Secretion of predicted Inc proteins of Chlamydia pneumoniae by a heterologous type III machinery, Molecular Microbiology, vol.65, issue.3, pp.792-800, 2001. ,
DOI : 10.1016/S1286-4579(00)00335-X
Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals, Proceedings of the National Academy of Sciences, vol.96, issue.22, pp.12839-12843, 1999. ,
DOI : 10.1073/pnas.96.22.12839
Identification of Shewanella baltica as the Most Important H2S-Producing Species during Iced Storage of Danish Marine Fish, Applied and Environmental Microbiology, vol.71, issue.11, pp.6689-6697, 2005. ,
DOI : 10.1128/AEM.71.11.6689-6697.2005
Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. nov. and Marinomonas pollencensis sp. nov., INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.60, issue.1, pp.93-98, 2010. ,
DOI : 10.1099/ijs.0.008607-0
but Is Not Essential for Xylem Colonization and Symptom Development of Sugarcane Leaf Scald, Molecular Plant-Microbe Interactions, vol.24, issue.2, pp.246-259, 2011. ,
DOI : 10.1094/MPMI-08-10-0188
URL : https://hal.archives-ouvertes.fr/hal-00729313
Conservation of Salmonella Infection Mechanisms in Plants and Animals, PLoS ONE, vol.31, issue.9, 2011. ,
DOI : 10.1371/journal.pone.0024112.s008
Red to red -the marine bacterium Hahella chejuensis and its product prodigiosin for mitigation of harmful algal blooms, J Microbiol Biotechnol, vol.18, pp.1621-1629, 2008. ,
Stability of microbial communities in goat milk during a lactation year: Molecular approaches, Systematic and Applied Microbiology, vol.30, issue.7, pp.547-560, 2007. ,
DOI : 10.1016/j.syapm.2007.05.004
URL : https://hal.archives-ouvertes.fr/hal-00621188
A new pathway for the secretion of virulence factors by bacteria: The flagellar export apparatus functions as a protein-secretion system, Proceedings of the National Academy of Sciences, vol.96, issue.11, pp.6456-6461, 1999. ,
DOI : 10.1073/pnas.96.11.6456
Campylobacter flagella: not just for motility, Trends in Microbiology, vol.15, issue.10, pp.456-461, 2007. ,
DOI : 10.1016/j.tim.2007.09.006
Hundreds of Flagellar Basal Bodies Cover the Cell Surface of the Endosymbiotic Bacterium Buchnera aphidicola sp. Strain APS, Journal of Bacteriology, vol.188, issue.18, pp.6539-6543, 2006. ,
DOI : 10.1128/JB.00561-06
The Evolution of the Flagellar Assembly Pathway in Endosymbiotic Bacterial Genomes, Molecular Biology and Evolution, vol.25, issue.9, pp.2069-2076, 2008. ,
DOI : 10.1093/molbev/msn153
Experimental evolution, loss-of-function mutations, and ???the first rule of adaptive evolution???, The Quarterly Review of Biology, vol.85, issue.4, pp.419-445, 2010. ,
DOI : 10.1086/656902
Salmonella type III secretion-associated chaperones confer secretion-pathway specificity, Molecular Microbiology, vol.39, issue.2, pp.483-495, 2004. ,
DOI : 10.1046/j.1365-2958.2003.03840.x
CT584 Supports Its Potential Role as a Type III Secretion Needle Tip Protein, Biochemistry, vol.48, issue.43, pp.10353-10361, 2009. ,
DOI : 10.1021/bi901200y
The Periplasmic Flagellum of Spirochetes, Journal of Molecular Microbiology and Biotechnology, vol.7, issue.1-2, pp.30-40, 2004. ,
DOI : 10.1159/000077867
Recent advances in the social and developmental biology of the myxobacteria, Microbiol Rev, vol.60, pp.70-102, 1996. ,
Convergence of the Secretory Pathways for Cholera Toxin and the Filamentous Phage, CTX, Science, vol.288, issue.5464, pp.333-335, 2000. ,
DOI : 10.1126/science.288.5464.333
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system, Nature Structural & Molecular Biology, vol.383, issue.5, pp.468-476, 2009. ,
DOI : 10.1111/j.1365-2958.1995.mmi_17010169.x
Topology and Organization of the Salmonella typhimurium Type III Secretion Needle Complex Components, PLoS Pathogens, vol.5, issue.4, 2010. ,
DOI : 10.1371/journal.ppat.1000824.s010
Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System, mBio, vol.1, issue.3, pp.158-00110, 2010. ,
DOI : 10.1128/mBio.00158-10
A C-Terminal Region of Yersinia pestis YscD Binds the Outer Membrane Secretin YscC, Journal of Bacteriology, vol.193, issue.9, pp.2276-2289, 2011. ,
DOI : 10.1128/JB.01137-10
Assembly of the switch complex onto the MS ring complex of Salmonella typhimurium does not require any other flagellar proteins., Journal of Bacteriology, vol.179, issue.3, pp.813-817, 1997. ,
DOI : 10.1128/jb.179.3.813-817.1997
Diversifying Selection Drives the Evolution of the Type III Secretion System Pilus of Pseudomonas syringae, Molecular Biology and Evolution, vol.23, issue.12, pp.2342-2354, 2006. ,
DOI : 10.1093/molbev/msl103
Positive Selection of the Hrp Pilin HrpE of the Plant Pathogen Xanthomonas, Journal of Bacteriology, vol.188, issue.4, pp.1405-1410, 2006. ,
DOI : 10.1128/JB.188.4.1405-1410.2006
An efficient algorithm for large-scale detection of protein families, Nucleic Acids Research, vol.30, issue.7, pp.1575-1584, 2002. ,
DOI : 10.1093/nar/30.7.1575
MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004. ,
DOI : 10.1093/nar/gkh340
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.27, issue.2, pp.221-224, 2010. ,
DOI : 10.1093/molbev/msp259
URL : https://hal.archives-ouvertes.fr/lirmm-00705187
Applied Discriminant Analysis, 1994. ,
An Improved General Amino Acid Replacement Matrix, Molecular Biology and Evolution, vol.25, issue.7, pp.1307-1320, 2008. ,
DOI : 10.1093/molbev/msn067
URL : https://hal.archives-ouvertes.fr/lirmm-00324106
Ultra-fast sequence clustering from similarity networks with SiLiX, BMC Bioinformatics, vol.12, issue.1, p.116, 2011. ,
DOI : 10.1186/1471-2105-8-396
URL : https://hal.archives-ouvertes.fr/hal-00698365
ScripTree: scripting phylogenetic graphics, Bioinformatics, vol.26, issue.8, pp.1125-1126, 2010. ,
DOI : 10.1093/bioinformatics/btq086
URL : https://hal.archives-ouvertes.fr/hal-00497209
Bacterial Nanomachines: The Flagellum and Type III Injectisome, Cold Spring Harbor Perspectives in Biology, vol.2, issue.11, p.299, 2010. ,
DOI : 10.1101/cshperspect.a000299
InterProScan: protein domains identifier, Nucleic Acids Research, vol.33, issue.Web Server, pp.116-120, 2005. ,
DOI : 10.1093/nar/gki442
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes, Bioinformatics, vol.26, issue.13, pp.1608-1615, 2010. ,
DOI : 10.1093/bioinformatics/btq249
Analysis of Putative Chlamydia trachomatis Chaperones Scc2 and Scc3 and Their Use in the Identification of Type III Secretion Substrates, Journal of Bacteriology, vol.187, issue.18, pp.6466-6478, 2005. ,
DOI : 10.1128/JB.187.18.6466-6478.2005