. Bange, Survival of mice infected with Mycobacterium smegmatis containing large DNA fragments from Mycobacterium tuberculosis, Tubercle and Lung Disease, vol.79, issue.3, pp.171-180, 1999.
DOI : 10.1054/tuld.1998.0201

. Bentley, The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex, PLoS Neglected Tropical Diseases, vol.100, issue.Pt 1, p.1552, 2012.
DOI : 10.1371/journal.pntd.0001552.s002

. Brosch, complex, Proceedings of the National Academy of Sciences, vol.99, issue.6, pp.3684-3689, 2002.
DOI : 10.1073/pnas.052548299

. Cole, Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature, vol.25, issue.6685, pp.537-544, 1998.
DOI : 10.1038/31159

. Daffe, Novel type-specific lipooligosaccharides from Mycobacterium tuberculosis, Biochemistry, vol.30, issue.2, pp.378-388, 1991.
DOI : 10.1021/bi00216a011

. Gonzalo-asensio, Evolutionary history of tuberculosis shaped by conserved mutations in the PhoPR virulence regulator, Proceedings of the National Academy of Sciences, vol.111, issue.31, pp.11491-11497, 2014.
DOI : 10.1073/pnas.1406693111

. Merker, Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage, Nature Genetics, vol.150, issue.3, pp.242-249, 2015.
DOI : 10.1016/S1672-0229(07)60007-2
URL : https://hal.archives-ouvertes.fr/pasteur-01153552

. Papavinasasundaram, Deletion of the Mycobacterium tuberculosis pknH Gene Confers a Higher Bacillary Load during the Chronic Phase of Infection in BALB/c Mice, Journal of Bacteriology, vol.187, issue.16, pp.5751-60, 2005.
DOI : 10.1128/JB.187.16.5751-5760.2005

&. Pouseele and . Supply, Accurate Whole-Genome Sequencing-Based Epidemiological Surveillance of Mycobacterium Tuberculosis, Methods in Microbiology, 2015.
DOI : 10.1016/bs.mim.2015.04.001

L. E. Quadri, Biosynthesis of mycobacterial lipids by polyketide synthases and beyond, Critical Reviews in Biochemistry and Molecular Biology, vol.46, issue.3, pp.179-211, 2014.
DOI : 10.1194/jlr.M400308-JLR200

C. Rousseau, Virulence attenuation of two Mas-like polyketide synthase mutants of Mycobacterium tuberculosis, Microbiology, vol.149, issue.7, pp.1837-1884, 2003.
DOI : 10.1099/mic.0.26278-0

P. Supply, Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis, Nature Genetics, vol.174, issue.2, pp.172-181, 2013.
DOI : 10.1093/infdis/jiq089

K. Tamura, MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Molecular Biology and Evolution, vol.28, issue.10, pp.2731-2740, 2011.
DOI : 10.1093/molbev/msr121
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3203626