Host-Bacterial Mutualism in the Human Intestine, Science, vol.307, issue.5717, pp.1915-1920, 2005. ,
DOI : 10.1126/science.1104816
Commensal Host-Bacterial Relationships in the Gut, Science, vol.292, issue.5519, pp.1115-1118, 2001. ,
DOI : 10.1126/science.1058709
The gut flora as a forgotten organ, EMBO reports, vol.13, issue.7, pp.688-693, 2006. ,
DOI : 10.1097/00001574-200411000-00011
The role of microbiota in infectious disease, Trends in Microbiology, vol.16, issue.3, pp.107-114, 2008. ,
DOI : 10.1016/j.tim.2007.12.008
The mechanism of action of probiotics, Current Opinion in Gastroenterology, vol.23, issue.6, pp.679-692, 2007. ,
DOI : 10.1097/MOG.0b013e3282f0cffc
The immune system and the gut microbiota: friends or foes?, Nature Reviews Immunology, vol.45, issue.10, pp.735-744, 2010. ,
DOI : 10.1038/nri2850
URL : https://hal.archives-ouvertes.fr/hal-01204303
Gut flora in health and disease: potential role of probiotics, Curr Issues Intest Microbiol, vol.6, pp.1-7, 2005. ,
From Structure to Function: the Ecology of Host-Associated Microbial Communities, Microbiology and Molecular Biology Reviews, vol.74, issue.3, p.453, 2010. ,
DOI : 10.1128/MMBR.00014-10
Gut flora in health and disease: potential role of probiotics, Curr Issues Intest Microbiol, vol.6, pp.1-7, 2005. ,
Mining the Probiotic Genome: Advanced Strategies, Enhanced Benefits, Perceived Obstacles, Current Pharmaceutical Design, vol.11, issue.1, pp.25-36, 2005. ,
DOI : 10.2174/1381612053382377
Analysis of the Genome Structure of the Nonpathogenic Probiotic Escherichia coli Strain Nissle 1917, Journal of Bacteriology, vol.186, issue.16, pp.5432-5441, 2004. ,
DOI : 10.1128/JB.186.16.5432-5441.2004
Recent developments and perspectives in the investigation of probiotic effects, International Journal of Medical Microbiology, vol.300, issue.1, pp.3-10, 2010. ,
DOI : 10.1016/j.ijmm.2009.08.003
Cellular and Physiological Effects of Probiotics and Prebiotics, Mini-Reviews in Medicinal Chemistry, vol.4, issue.8, pp.889-896, 2004. ,
DOI : 10.2174/1389557043403369
Non-vertebrate hosts in the analysis of host???pathogen interactions, Microbes and Infection, vol.8, issue.6, pp.1637-1646, 2006. ,
DOI : 10.1016/j.micinf.2005.11.020
Genetic Models in Pathogenesis, Annual Review of Genetics, vol.38, issue.1, pp.347-363, 2004. ,
DOI : 10.1146/annurev.genet.38.072902.092528
Host???microbe interactions in the developing zebrafish, Current Opinion in Immunology, vol.22, issue.1, pp.10-19, 2010. ,
DOI : 10.1016/j.coi.2010.01.006
The Use of Zebrafish to Understand Immunity, Immunity, vol.20, issue.4, pp.367-379, 2004. ,
DOI : 10.1016/S1074-7613(04)00084-6
Intestinal growth and differentiation in zebrafish, Mechanisms of Development, vol.122, issue.2, pp.157-173, 2005. ,
DOI : 10.1016/j.mod.2004.10.009
Trolling for the ideal model host: zebrafish take the bait, Future Microbiology, vol.5, issue.4, pp.563-569, 2010. ,
DOI : 10.2217/fmb.10.24
Methods for generating and colonizing gnotobiotic zebrafish, Nature Protocols, vol.203, issue.12, pp.1862-1875, 2008. ,
DOI : 10.1073/pnas.87.11.4304
Evolution of the Zebrafish Model: From Development to Immunity and Infectious Disease, Zebrafish, vol.2, issue.2, pp.87-103, 2005. ,
DOI : 10.1089/zeb.2005.2.87
Insights into early mycobacterial pathogenesis from the zebrafish, Current Opinion in Microbiology, vol.11, issue.3, pp.277-283, 2008. ,
DOI : 10.1016/j.mib.2008.05.013
A star with stripes: zebrafish as an infection model, Trends in Microbiology, vol.12, issue.10, pp.451-457, 2004. ,
DOI : 10.1016/j.tim.2004.08.001
We know you are in there: Conversing with the indigenous gut microbiota, Research in Microbiology, vol.158, issue.1, pp.2-9, 2007. ,
DOI : 10.1016/j.resmic.2006.10.005
Microbial Colonization Induces Dynamic Temporal and Spatial Patterns of NF-??B Activation in the Zebrafish Digestive Tract, Gastroenterology, vol.141, issue.1, pp.197-207, 2011. ,
DOI : 10.1053/j.gastro.2011.03.042
Host-Pathogen Interactions Made Transparent with the Zebrafish Model, Current Drug Targets, vol.12, issue.7, pp.1000-1017, 2011. ,
DOI : 10.2174/138945011795677809
In vivo imaging and genetic analysis link bacterial motility and symbiosis in the zebrafish gut, Proceedings of the National Academy of Sciences, vol.104, issue.18, pp.7622-7627, 2007. ,
DOI : 10.1073/pnas.0702386104
Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation, Developmental Biology, vol.297, issue.2, pp.374-386, 2006. ,
DOI : 10.1016/j.ydbio.2006.05.006
Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection, Cell, vol.127, issue.2, pp.423-433, 2006. ,
DOI : 10.1016/j.cell.2006.08.043
URL : http://doi.org/10.1016/j.cell.2006.08.043
Prey Tracking by Larval Zebrafish: Axial Kinematics and Visual Control, Brain, Behavior and Evolution, vol.66, issue.3, pp.177-196, 2005. ,
DOI : 10.1159/000087158
Chapter 1 Laboratory and Evolutionary History of Tetrahymena thermophila, Methods Cell Biol, vol.62, pp.3-25, 2000. ,
DOI : 10.1016/S0091-679X(08)61527-7
Normal table of postembryonic zebrafish development: Staging by externally visible anatomy of the living fish, Developmental Dynamics, vol.228, issue.pt 4, pp.2975-3015, 2009. ,
DOI : 10.1002/dvdy.22113
Edwardsiellosis in fish: a brief review, Journal of Biosciences, vol.7, issue.S3, pp.1331-1344, 2007. ,
DOI : 10.1007/s12038-007-0143-8
Immune response of zebrafish (Danio rerio) against a newly isolated bacterial pathogen Aeromonas hydrophila, Fish & Shellfish Immunology, vol.25, issue.3, pp.239-249, 2008. ,
DOI : 10.1016/j.fsi.2008.05.002
Importance of skin abrasion as a primary site of adhesion for Edwardsiella ictaluri and impact on invasion and systematic infection in channel catfish Ictalurus punctatus, Veterinary Microbiology, vol.148, issue.2-4, pp.425-455, 2010. ,
DOI : 10.1016/j.vetmic.2010.08.022
Pathology of experimental enteric septicaemia in channel catfish, Ictalurus punctatus (Rafinesque), following immersion-exposure to Edwardsiella ictaluri, Journal of Fish Diseases, vol.43, issue.4, pp.335-347, 1989. ,
DOI : 10.1577/1548-8659(1986)115<183:TONTF>2.0.CO;2
infection reveals phagocyte-dependent resistance of zebrafish to non-host specialized pathogens, Cellular Microbiology, vol.194, issue.11, pp.2312-2325, 2008. ,
DOI : 10.1111/j.1462-5822.2008.01213.x
Origins and unconventional behavior of neutrophils in developing zebrafish, Blood, vol.111, issue.1, pp.132-141, 2008. ,
DOI : 10.1182/blood-2007-06-095398
biofilm formation: roles of flagella, motility, chemotaxis and type I pili, Molecular Microbiology, vol.86, issue.2, pp.285-293, 1998. ,
DOI : 10.1046/j.1365-2958.1998.01061.x
Antigen 43, a phase-variable bipartite outer membrane protein, determines colony morphology and autoaggregation in Escherichia coli K-12, FEMS Microbiology Letters, vol.149, issue.1, pp.115-120, 1997. ,
DOI : 10.1111/j.1574-6968.1997.tb10317.x
Isolation of an Escherichia coli K-12 mutant strain able to form biofilms on inert surfaces: involvement of a new ompR allele that increases curli expression, J Bacteriol, vol.180, pp.2442-2449, 1998. ,
Genetic analysis of Escherichia coli K1 gastrointestinal colonization, Molecular Microbiology, vol.145, issue.6, pp.1293-1305, 2000. ,
DOI : 10.1016/S0378-1097(96)00509-5
The role of fimbriae and flagella in the adherence of avian strains of Escherichia coli O78:K80 to tissue culture cells and tracheal and gut explants, Journal of Medical Microbiology, vol.49, issue.4, pp.327-338, 2000. ,
DOI : 10.1099/0022-1317-49-4-327
Crohn??s disease-associated Escherichia coli LF82 aggravates colitis in injured mouse colon via signaling by flagellin, Inflammatory Bowel Diseases, vol.14, issue.8, pp.1051-1060, 2008. ,
DOI : 10.1002/ibd.20423
F1C Fimbriae Play an Important Role in Biofilm Formation and Intestinal Colonization by the Escherichia coli Commensal Strain Nissle 1917, Applied and Environmental Microbiology, vol.75, issue.1, pp.246-251, 1917. ,
DOI : 10.1128/AEM.01144-08
The prolongation of life. Optimistic studies, 1907. ,
Intestinal Alkaline Phosphatase Detoxifies Lipopolysaccharide and Prevents Inflammation in Zebrafish in Response to the Gut Microbiota, Cell Host & Microbe, vol.2, issue.6, pp.371-382, 2007. ,
DOI : 10.1016/j.chom.2007.10.010
From The Cover: Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota, Proceedings of the National Academy of Sciences, vol.101, issue.13, pp.4596-4601, 2004. ,
DOI : 10.1073/pnas.0400706101
Zebrafish as a model for infectious disease and immune function, Fish & Shellfish Immunology, vol.25, issue.4, pp.341-350, 2008. ,
DOI : 10.1016/j.fsi.2008.05.005
Comparative pathogenesis of Mycobacterium marinum and Mycobacterium tuberculosis, Cellular Microbiology, vol.109, issue.5, pp.1027-1039, 2008. ,
DOI : 10.1016/j.cca.2004.03.008
Zebrafish larvae are unable to mount a protective antiviral response against waterborne infection by spring viremia of carp virus, Developmental & Comparative Immunology, vol.34, issue.5, pp.546-552, 2010. ,
DOI : 10.1016/j.dci.2009.12.015
Characterization of Snakehead Rhabdovirus Infection in Zebrafish (Danio rerio), Journal of Virology, vol.79, issue.3, 2005. ,
DOI : 10.1128/JVI.79.3.1842-1852.2005
Pathogenesis and inflammatory response to Edwardsiella tarda infection in the zebrafish, Developmental & Comparative Immunology, vol.29, issue.6, pp.501-513, 2005. ,
DOI : 10.1016/j.dci.2004.10.007
Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda, BMC Immunology, vol.12, issue.1, p.58, 2011. ,
DOI : 10.1186/1471-2105-7-470
RNAi suppression of zebrafish peptidoglycan recognition protein 6 (zfPGRP6) mediated differentially expressed genes involved in Toll-like receptor signaling pathway and caused increased susceptibility to Flavobacterium columnare, Veterinary Immunology and Immunopathology, vol.124, issue.3-4, pp.295-301, 2008. ,
DOI : 10.1016/j.vetimm.2008.04.003
Edwardsiella ictaluri sp. nov., the Causative Agent of Enteric Septicemia of Catfish, International Journal of Systematic Bacteriology, vol.31, issue.4, pp.396-400, 1981. ,
DOI : 10.1099/00207713-31-4-396
as a Model for Enteric Septicemia of Catfish (ESC), Journal of Aquatic Animal Health, vol.51, issue.3, pp.151-158, 2007. ,
DOI : 10.1016/j.fsi.2004.09.005
Development of bioluminescent Edwardsiella ictaluri for noninvasive disease monitoring, FEMS Microbiology Letters, vol.260, issue.2, pp.216-223, 2006. ,
DOI : 10.1111/j.1574-6968.2006.00310.x
Signature-Tagged Mutagenesis of Edwardsiella ictaluri Identifies Virulence-Related Genes, Including a Salmonella Pathogenicity Island 2 Class of Type III Secretion Systems, Applied and Environmental Microbiology, vol.73, issue.24, pp.7934-7946, 2007. ,
DOI : 10.1128/AEM.01115-07
Histological changes in intestine of Atlantic salmon (Salmo salar L.) following in vitro exposure to pathogenic and probiotic bacterial strains, Cell and Tissue Research, vol.3, issue.1, pp.109-116, 2007. ,
DOI : 10.1007/s00441-006-0323-0
IL-22 and inflammation: Leukin' through a glass onion, European Journal of Immunology, vol.22, issue.12, pp.3265-3268, 2008. ,
DOI : 10.1002/eji.200838655
Protective effects and mechanisms of a probiotic bacterium Lactobacillus rhamnosus against experimental Edwardsiella tarda infection in tilapia (Oreochromis niloticus), Veterinary Immunology and Immunopathology, vol.113, issue.3-4, pp.339-347, 2006. ,
DOI : 10.1016/j.vetimm.2006.06.003
Protection against enteric septicemia of catfish (Ictalurus punctatus) by immunization with the R-mutant, Escherichia coli (J5), 1994. ,
The zebrafish book. A guide for the laboratory use of zebrafish (Brachydanio rerio) Eugene: The University of, 1993. ,
[19] Performing Quantitative Reverse???Transcribed Polymerase Chain Reaction Experiments, Methods enzymol, vol.410, pp.386-400, 2006. ,
DOI : 10.1016/S0076-6879(06)10019-1
In Vivo Analysis of Zebrafish Innate Immunity, Methods Mol Biol, vol.415, pp.337-363, 2008. ,
DOI : 10.1007/978-1-59745-570-1_20
URL : https://hal.archives-ouvertes.fr/hal-00275408
Identification of a sex-factoraffinity site in E. coli as gamma delta, Cold Spring Harbor symposia on quantitative biology 45 Pt, vol.1, pp.135-140, 1981. ,
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection, Molecular Systems Biology, vol.170, p.8, 2006. ,
DOI : 10.1038/msb4100050
Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities, Environmental Microbiology, vol.93, issue.7, pp.1957-1977, 2010. ,
DOI : 10.1111/j.1462-2920.2010.02202.x
URL : https://hal.archives-ouvertes.fr/pasteur-01393508
A Short???Time Scale Colloidal System Reveals Early Bacterial Adhesion Dynamics, PLoS Biology, vol.21, issue.7, p.167, 2008. ,
DOI : 10.1371/journal.pbio.0060167.st001
URL : https://hal.archives-ouvertes.fr/pasteur-00342856
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths, PLoS Genetics, vol.68, issue.1, p.1000344, 2009. ,
DOI : 10.1371/journal.pgen.1000344.s016
URL : https://hal.archives-ouvertes.fr/hal-00390293